Wall clock time and date at job start Tue Mar 31 2020 07:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38670 * 120.78949 * 2 1 4 4 C 1.38179 * 119.16199 * 180.02562 * 3 2 1 5 5 N 1.31888 * 120.76735 * 0.02594 * 4 3 2 6 6 C 1.31860 * 121.72117 * 359.67857 * 5 4 3 7 7 C 1.38226 * 120.76483 * 0.58397 * 6 5 4 8 8 C 1.50701 * 120.41810 * 179.73086 * 7 6 5 9 9 C 1.50697 * 109.46965 * 264.72191 * 8 7 6 10 10 O 1.21285 * 120.00256 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00168 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00533 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47281 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.46691 * 55.00839 * 13 12 11 15 15 C 1.52994 * 109.47313 * 295.00596 * 13 12 11 16 16 C 1.53003 * 109.46790 * 175.00106 * 13 12 11 17 17 N 1.46499 * 109.46708 * 185.00148 * 16 13 12 18 18 C 1.36935 * 119.99926 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 16 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47045 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47426 * 119.99572 * 22 20 18 25 25 H 1.48501 * 109.46833 * 239.99815 * 22 20 18 26 26 H 1.09010 * 109.46803 * 269.97692 * 1 2 3 27 27 H 1.08999 * 109.47123 * 29.97499 * 1 2 3 28 28 H 1.09002 * 109.47406 * 149.98182 * 1 2 3 29 29 H 1.08001 * 120.41920 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.61752 * 179.97438 * 4 3 2 31 31 H 1.08000 * 119.61086 * 180.29257 * 6 5 4 32 32 H 1.09000 * 109.46955 * 144.72210 * 8 7 6 33 33 H 1.08994 * 109.46962 * 24.72226 * 8 7 6 34 34 H 0.97002 * 119.99362 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.46701 * 60.00421 * 12 11 9 36 36 H 1.08998 * 109.47517 * 300.00740 * 12 11 9 37 37 H 1.08995 * 109.47196 * 59.99903 * 15 13 12 38 38 H 1.09006 * 109.47245 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.47110 * 299.99807 * 15 13 12 40 40 H 1.08998 * 109.46692 * 65.00650 * 16 13 12 41 41 H 1.08994 * 109.47584 * 305.00514 * 16 13 12 42 42 H 0.97005 * 120.00261 * 0.02562 * 17 16 13 43 43 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0016 6 6 3.5982 -1.1517 0.0042 7 6 2.2165 -1.1909 -0.0006 8 6 1.4908 -2.5117 0.0000 9 6 1.1393 -2.8922 -1.4152 10 8 1.4473 -2.1625 -2.3337 11 7 0.4817 -4.0428 -1.6601 12 6 0.1394 -4.4126 -3.0357 13 6 -0.5973 -5.7535 -3.0352 14 1 -1.4616 -5.6929 -2.3736 15 6 0.3455 -6.8533 -2.5430 16 6 -1.0640 -6.0795 -4.4553 17 7 -1.8712 -7.3018 -4.4355 18 6 -2.4007 -7.7916 -5.5995 19 1 -2.2236 -7.2765 -6.5321 20 6 -3.1610 -8.9529 -5.5816 21 7 -3.3724 -9.5836 -4.4459 22 14 -3.8827 -9.6215 -7.1696 23 1 -3.5014 -8.7350 -8.2983 24 1 -3.3583 -10.9889 -7.4146 25 1 -5.3627 -9.6714 -7.0581 26 1 -0.3633 -0.0004 1.0278 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6967 2.1377 -0.0004 30 1 4.1583 2.0754 -0.0010 31 1 4.1585 -2.0750 0.0079 32 1 0.5785 -2.4246 0.5901 33 1 2.1323 -3.2786 0.4338 34 1 0.2343 -4.6258 -0.9253 35 1 1.0516 -4.4999 -3.6260 36 1 -0.5019 -3.6453 -3.4694 37 1 0.6780 -6.6210 -1.5313 38 1 -0.1795 -7.8086 -2.5422 39 1 1.2097 -6.9139 -3.2045 40 1 -0.1961 -6.2276 -5.0979 41 1 -1.6637 -5.2542 -4.8392 42 1 -2.0307 -7.7643 -3.5978 43 1 -3.9034 -10.3953 -4.4334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:50 Heat of formation + Delta-G solvation = -9.333874 kcal Electronic energy + Delta-G solvation = -22276.992736 eV Core-core repulsion = 18935.724779 eV Total energy + Delta-G solvation = -3341.267957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81987 -39.48504 -36.89541 -34.65787 -34.37331 -32.86090 -32.39731 -30.14412 -28.88585 -27.80578 -26.35541 -25.18021 -23.18376 -22.54588 -21.87961 -20.59341 -19.80059 -17.45781 -17.06666 -16.81503 -16.71856 -16.22499 -15.48061 -15.20362 -14.66147 -14.44144 -14.40953 -13.73848 -13.70652 -13.51348 -13.16991 -13.12465 -12.96992 -12.90293 -12.70184 -12.43301 -12.15273 -12.03111 -11.64711 -11.08845 -10.94375 -10.73861 -10.59737 -10.45354 -10.12406 -9.97138 -9.72182 -9.67547 -9.63326 -9.18053 -9.08117 -8.90339 -6.94565 -5.79368 -3.07732 0.85751 1.03144 2.52751 3.08951 3.42063 3.48139 3.50142 3.61624 4.14685 4.34902 4.42399 4.57330 4.57485 4.65580 4.74935 5.03088 5.04285 5.06743 5.18373 5.20278 5.22786 5.31714 5.35368 5.52350 5.55761 5.67559 5.78120 5.81431 5.93275 5.95500 6.07643 6.07852 6.21149 6.35978 6.44042 6.47125 6.62296 6.74367 6.83799 7.41765 7.69125 7.75655 8.13273 8.39804 9.51212 10.08236 10.43016 11.43687 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.041958 B = 0.002307 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.174406 B =12133.424808 C =12259.485579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.026 4.026 3 C -0.174 4.174 4 C 0.098 3.902 5 N -0.489 5.489 6 C 0.114 3.886 7 C -0.117 4.117 8 C -0.101 4.101 9 C 0.511 3.489 10 O -0.534 6.534 11 N -0.725 5.725 12 C 0.127 3.873 13 C -0.110 4.110 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 18.461 14.693 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.059 4.059 5 N -0.198 5.198 6 C -0.043 4.043 7 C -0.120 4.120 8 C -0.142 4.142 9 C 0.296 3.704 10 O -0.410 6.410 11 N -0.377 5.377 12 C 0.003 3.997 13 C -0.129 4.129 14 H 0.095 0.905 15 C -0.199 4.199 16 C 0.032 3.968 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.218 0.782 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.538 18.977 13.816 26.156 hybrid contribution -1.560 -0.912 -0.293 1.831 sum 9.978 18.065 13.523 24.674 Atomic orbital electron populations 1.20867 0.90348 1.03816 1.02594 1.20151 0.96688 0.92475 0.94036 1.21998 0.95636 0.98505 1.03270 1.22719 0.91784 0.96242 0.95133 1.67680 1.41096 0.98454 1.12561 1.22601 0.90834 0.96356 0.94503 1.20158 0.94949 0.94216 1.02632 1.20617 1.02379 0.95657 0.95501 1.20422 0.77973 0.81162 0.90845 1.90745 1.53033 1.51081 1.46177 1.46080 1.58780 1.22639 1.10213 1.21417 0.99843 0.96477 0.81962 1.21551 0.98272 0.93123 0.99982 0.90541 1.21790 0.99290 0.99506 0.99286 1.20575 0.94051 0.90270 0.91899 1.42346 1.60473 1.26482 1.08251 1.19284 1.24708 1.05423 0.87487 0.91104 1.24741 1.01210 0.98155 0.96993 1.69664 1.44461 1.19980 1.24218 0.86105 0.78636 0.78652 0.82748 1.20537 1.21863 1.21874 0.90391 0.90797 0.90997 0.84861 0.82875 0.82989 0.87643 0.87554 0.76467 0.91370 0.91418 0.93890 0.91143 0.92823 0.96006 0.96158 0.78213 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 9.31 36.01 0.34 -0.56 16 2 C -0.03 -0.24 5.92 -104.32 -0.62 -0.86 16 3 C -0.17 -1.52 9.82 -39.44 -0.39 -1.91 16 4 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 5 N -0.49 -5.66 10.36 -13.25 -0.14 -5.80 16 6 C 0.11 1.21 10.84 -17.54 -0.19 1.02 16 7 C -0.12 -1.15 4.39 -104.48 -0.46 -1.61 16 8 C -0.10 -0.78 5.18 -29.04 -0.15 -0.93 16 9 C 0.51 5.81 7.15 -10.99 -0.08 5.73 16 10 O -0.53 -8.48 16.03 5.55 0.09 -8.39 16 11 N -0.73 -7.60 5.28 -60.30 -0.32 -7.92 16 12 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 13 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 14 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 15 C -0.14 -2.00 8.94 37.15 0.33 -1.67 16 16 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 17 N -0.73 -18.09 5.33 -59.91 -0.32 -18.41 16 18 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 29 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.11 0.59 7.10 -51.93 -0.37 0.22 16 33 H 0.11 0.57 8.06 -51.93 -0.42 0.15 16 34 H 0.40 3.18 7.66 -40.82 -0.31 2.87 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 38 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -34.59 358.13 -8.16 -42.75 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.65 Total: 6.70 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.92 Total: -4.45 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.05 Total: -59.33 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.59 -8.16 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.414 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds