Wall clock time and date at job start Tue Mar 31 2020 07:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38672 * 120.79196 * 2 1 4 4 C 1.38181 * 119.16275 * 180.02562 * 3 2 1 5 5 N 1.31887 * 120.76773 * 0.02562 * 4 3 2 6 6 C 1.31852 * 121.72178 * 359.68382 * 5 4 3 7 7 C 1.38227 * 120.76476 * 0.57923 * 6 5 4 8 8 C 1.50703 * 120.41757 * 179.73048 * 7 6 5 9 9 C 1.50700 * 109.47148 * 264.72164 * 8 7 6 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.47508 * 304.99882 * 13 12 11 15 15 C 1.52992 * 109.47225 * 64.99918 * 13 12 11 16 16 C 1.53001 * 109.47200 * 184.99961 * 13 12 11 17 17 N 1.46507 * 109.47141 * 174.99952 * 16 13 12 18 18 C 1.36932 * 120.00060 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00095 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00309 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99752 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00472 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46871 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46963 * 119.99950 * 22 20 18 25 25 H 1.48494 * 109.47332 * 240.00207 * 22 20 18 26 26 H 1.08996 * 109.46961 * 269.98189 * 1 2 3 27 27 H 1.09010 * 109.46601 * 29.97476 * 1 2 3 28 28 H 1.08994 * 109.47205 * 149.97509 * 1 2 3 29 29 H 1.07998 * 120.41952 * 359.97438 * 3 2 1 30 30 H 1.08001 * 119.61800 * 180.02562 * 4 3 2 31 31 H 1.08000 * 119.61871 * 180.28922 * 6 5 4 32 32 H 1.09009 * 109.46601 * 144.72186 * 8 7 6 33 33 H 1.08998 * 109.47035 * 24.72694 * 8 7 6 34 34 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 35 35 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 36 36 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 37 37 H 1.08998 * 109.47345 * 299.99889 * 15 13 12 38 38 H 1.09002 * 109.47301 * 60.00195 * 15 13 12 39 39 H 1.09001 * 109.47633 * 180.02562 * 15 13 12 40 40 H 1.08996 * 109.47431 * 294.99845 * 16 13 12 41 41 H 1.09001 * 109.47356 * 55.00657 * 16 13 12 42 42 H 0.97003 * 120.00137 * 359.97438 * 17 16 13 43 43 H 0.96998 * 120.00372 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5983 -1.1516 0.0041 7 6 2.2166 -1.1909 -0.0007 8 6 1.4908 -2.5116 -0.0003 9 6 1.1392 -2.8921 -1.4154 10 8 1.4481 -2.1628 -2.3340 11 7 0.4771 -4.0403 -1.6598 12 6 0.1301 -4.4071 -3.0350 13 6 -0.6112 -5.7456 -3.0342 14 1 -0.0068 -6.4954 -2.5236 15 6 -1.9484 -5.5875 -2.3078 16 6 -0.8637 -6.1897 -4.4764 17 7 -1.4658 -7.5253 -4.4778 18 6 -1.7829 -8.1321 -5.6636 19 1 -1.5888 -7.6263 -6.5979 20 6 -2.3529 -9.3978 -5.6650 21 7 -2.5890 -10.0144 -4.5264 22 14 -2.7862 -10.2254 -7.2827 23 1 -2.4240 -9.3289 -8.4099 24 1 -2.0342 -11.5002 -7.4035 25 1 -4.2440 -10.5051 -7.3208 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8903 -0.5135 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6967 2.1377 -0.0004 30 1 4.1583 2.0753 -0.0001 31 1 4.1584 -2.0750 0.0078 32 1 0.5784 -2.4246 0.5899 33 1 2.1323 -3.2786 0.4336 34 1 0.2304 -4.6237 -0.9252 35 1 -0.5099 -3.6373 -3.4660 36 1 1.0403 -4.4968 -3.6279 37 1 -1.7686 -5.2712 -1.2803 38 1 -2.5528 -4.8377 -2.8183 39 1 -2.4763 -6.5411 -2.3067 40 1 -1.5405 -5.4855 -4.9602 41 1 0.0813 -6.2167 -5.0190 42 1 -1.6398 -7.9797 -3.6387 43 1 -2.9877 -10.8987 -4.5273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:55 Heat of formation + Delta-G solvation = -9.293602 kcal Electronic energy + Delta-G solvation = -22285.491490 eV Core-core repulsion = 18944.225279 eV Total energy + Delta-G solvation = -3341.266210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82079 -39.48559 -36.89651 -34.66015 -34.37350 -32.86183 -32.39734 -30.14371 -28.88705 -27.81198 -26.35764 -25.18036 -23.18551 -22.54523 -21.88083 -20.59420 -19.80179 -17.46043 -17.06707 -16.81073 -16.71958 -16.21974 -15.52958 -15.14337 -14.68907 -14.42900 -14.42038 -13.76271 -13.70368 -13.48010 -13.13918 -13.12729 -13.01942 -12.92179 -12.70092 -12.43010 -12.15822 -12.02314 -11.65698 -11.08930 -10.94254 -10.73869 -10.59941 -10.45618 -10.12373 -9.97118 -9.72059 -9.67522 -9.63520 -9.17988 -9.08177 -8.90234 -6.94461 -5.79251 -3.07619 0.85743 1.03049 2.52743 3.08956 3.42176 3.48245 3.50257 3.61624 4.14674 4.34985 4.42093 4.57226 4.57502 4.65444 4.74896 5.03055 5.03780 5.06840 5.18092 5.19667 5.22250 5.31645 5.34944 5.52260 5.55817 5.66951 5.77459 5.81151 5.92280 5.96039 6.07169 6.07933 6.20586 6.35283 6.43918 6.47115 6.61872 6.74377 6.83614 7.41767 7.69263 7.75806 8.13257 8.39924 9.51329 10.08326 10.43115 11.43812 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.043075 B = 0.002304 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.869815 B =12152.418151 C =12291.908398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.026 4.026 3 C -0.174 4.174 4 C 0.098 3.902 5 N -0.489 5.489 6 C 0.114 3.886 7 C -0.117 4.117 8 C -0.101 4.101 9 C 0.511 3.489 10 O -0.534 6.534 11 N -0.725 5.725 12 C 0.127 3.873 13 C -0.110 4.110 14 H 0.077 0.923 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 20.136 15.005 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.059 4.059 5 N -0.198 5.198 6 C -0.043 4.043 7 C -0.120 4.120 8 C -0.142 4.142 9 C 0.296 3.704 10 O -0.410 6.410 11 N -0.377 5.377 12 C 0.003 3.997 13 C -0.129 4.129 14 H 0.095 0.905 15 C -0.198 4.198 16 C 0.032 3.968 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.515 20.642 14.126 26.423 hybrid contribution -1.377 -1.012 -0.311 1.737 sum 7.138 19.630 13.815 25.043 Atomic orbital electron populations 1.20861 0.90370 1.03792 1.02578 1.20146 0.96674 0.92476 0.94075 1.21996 0.95638 0.98496 1.03291 1.22720 0.91783 0.96245 0.95128 1.67677 1.41099 0.98454 1.12543 1.22606 0.90839 0.96365 0.94466 1.20160 0.94954 0.94213 1.02627 1.20621 1.02376 0.95667 0.95499 1.20422 0.77956 0.81177 0.90844 1.90744 1.53067 1.51045 1.46174 1.46079 1.58468 1.22898 1.10267 1.21416 0.99651 0.96670 0.81958 1.21552 0.96851 0.95254 0.99292 0.90506 1.21787 0.96795 1.02978 0.98282 1.20577 0.96085 0.88510 0.91626 1.42346 1.74194 1.14456 1.06556 1.19283 1.33215 0.98186 0.86214 0.91103 1.24742 1.01988 0.97469 0.96903 1.69664 1.49737 1.14963 1.23964 0.86105 0.77728 0.79336 0.82972 1.20537 1.21868 1.21868 0.90404 0.90813 0.91006 0.84870 0.82876 0.82969 0.87657 0.87539 0.76463 0.91404 0.91381 0.93915 0.92855 0.91142 0.96019 0.96137 0.78214 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.31 36.00 0.34 -0.54 16 2 C -0.03 -0.24 5.92 -104.32 -0.62 -0.86 16 3 C -0.17 -1.52 9.82 -39.44 -0.39 -1.91 16 4 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 5 N -0.49 -5.68 10.36 -13.25 -0.14 -5.82 16 6 C 0.11 1.21 10.84 -17.55 -0.19 1.02 16 7 C -0.12 -1.15 4.39 -104.48 -0.46 -1.61 16 8 C -0.10 -0.78 5.18 -29.03 -0.15 -0.93 16 9 C 0.51 5.81 7.15 -10.98 -0.08 5.73 16 10 O -0.53 -8.48 16.03 5.55 0.09 -8.39 16 11 N -0.73 -7.60 5.28 -60.30 -0.32 -7.92 16 12 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 13 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 14 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 15 C -0.14 -1.97 8.94 37.15 0.33 -1.64 16 16 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 17 N -0.73 -18.10 5.33 -59.91 -0.32 -18.42 16 18 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.50 8.10 -51.92 -0.42 0.08 16 28 H 0.07 0.59 6.36 -51.93 -0.33 0.26 16 29 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.11 0.58 7.10 -51.92 -0.37 0.21 16 33 H 0.11 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.40 3.18 7.65 -40.82 -0.31 2.87 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.38 9.86 6.85 -40.82 -0.28 9.58 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -34.61 358.13 -8.16 -42.78 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.65 Total: 6.65 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.92 Total: -4.40 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.05 Total: -59.37 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.61 -8.16 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.482 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds