Wall clock time and date at job start Tue Mar 31 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38230 * 120.42101 * 2 1 4 4 N 1.31849 * 120.76531 * 180.02562 * 3 2 1 5 5 C 1.31897 * 121.72497 * 359.70311 * 4 3 2 6 6 C 1.38180 * 120.76120 * 0.58811 * 5 4 3 7 7 C 1.50701 * 120.41434 * 179.70183 * 6 5 4 8 8 C 1.50703 * 109.47064 * 269.72103 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.08990 * 109.47170 * 54.99738 * 12 11 10 14 14 C 1.53005 * 109.46867 * 294.99527 * 12 11 10 15 15 C 1.53002 * 109.46776 * 174.99842 * 12 11 10 16 16 N 1.46506 * 109.46916 * 184.99371 * 15 12 11 17 17 C 1.36935 * 119.99911 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00226 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99846 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00275 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46718 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47209 * 119.99613 * 21 19 17 24 24 H 1.48499 * 109.47208 * 240.00196 * 21 19 17 25 25 C 1.38636 * 120.42062 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47396 * 269.97315 * 1 2 3 27 27 H 1.09003 * 109.47434 * 29.97816 * 1 2 3 28 28 H 1.09005 * 109.47572 * 149.97832 * 1 2 3 29 29 H 1.07991 * 119.61626 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.61617 * 180.31108 * 5 4 3 31 31 H 1.09002 * 109.47060 * 149.72140 * 7 6 5 32 32 H 1.09001 * 109.47380 * 29.72052 * 7 6 5 33 33 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 35 35 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 36 36 H 1.09004 * 109.46908 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.47443 * 300.00098 * 14 12 11 38 38 H 1.09001 * 109.47099 * 60.00379 * 14 12 11 39 39 H 1.08993 * 109.47416 * 304.99509 * 15 12 11 40 40 H 1.09001 * 109.46966 * 65.00241 * 15 12 11 41 41 H 0.96999 * 119.99735 * 0.02562 * 16 15 12 42 42 H 0.96997 * 120.00544 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.78497 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.1999 -0.0005 5 6 4.2256 0.0822 0.0048 6 6 3.5947 -1.1471 -0.0011 7 6 4.4026 -2.4193 -0.0017 8 6 4.6713 -2.8429 -1.4228 9 8 4.2488 -2.1772 -2.3443 10 7 5.3812 -3.9618 -1.6697 11 6 5.6429 -4.3733 -3.0511 12 6 6.4619 -5.6656 -3.0517 13 1 5.9453 -6.4234 -2.4629 14 6 7.8391 -5.3968 -2.4417 15 6 6.6290 -6.1627 -4.4890 16 7 7.3093 -7.4602 -4.4810 17 6 7.5694 -8.1042 -5.6611 18 1 7.2735 -7.6555 -6.5978 19 6 8.2135 -9.3338 -5.6535 20 7 8.5747 -9.8805 -4.5120 21 14 8.5678 -10.2127 -7.2633 22 1 8.0642 -9.3941 -8.3954 23 1 10.0325 -10.4101 -7.4076 24 1 7.8877 -11.5328 -7.2667 25 6 2.2089 -1.1955 -0.0005 26 1 -0.3634 -0.0005 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6675 2.1276 0.0004 30 1 5.3046 0.1285 0.0093 31 1 3.8463 -3.2032 0.5121 32 1 5.3489 -2.2490 0.5117 33 1 5.7193 -4.4940 -0.9326 34 1 6.1998 -3.5894 -3.5645 35 1 4.6967 -4.5429 -3.5650 36 1 8.4228 -6.3174 -2.4425 37 1 8.3557 -4.6390 -3.0305 38 1 7.7200 -5.0427 -1.4177 39 1 5.6485 -6.2695 -4.9529 40 1 7.2226 -5.4449 -5.0551 41 1 7.5747 -7.8634 -3.6396 42 1 9.0244 -10.7399 -4.5065 43 1 1.6887 -2.1420 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:00 Heat of formation + Delta-G solvation = -11.027773 kcal Electronic energy + Delta-G solvation = -21965.626853 eV Core-core repulsion = 18624.285443 eV Total energy + Delta-G solvation = -3341.341410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73743 -39.53045 -36.89005 -34.40114 -33.90369 -33.80816 -32.49671 -30.15282 -28.60763 -27.58855 -26.37816 -25.19196 -23.49898 -22.60270 -21.69440 -20.55301 -19.77413 -17.47773 -17.20951 -16.97956 -16.80221 -16.18611 -15.49446 -14.82751 -14.59877 -14.41295 -14.38225 -13.81509 -13.65708 -13.48191 -13.30666 -13.10696 -12.95823 -12.88502 -12.75552 -12.46686 -12.20686 -12.07046 -11.71023 -11.08589 -10.94064 -10.73554 -10.59507 -10.45246 -10.16499 -10.00993 -9.78353 -9.70219 -9.65699 -9.07999 -9.04514 -8.90121 -6.94313 -5.79113 -3.07494 0.82582 1.03874 2.53435 3.08493 3.42238 3.48269 3.50306 3.60470 4.11280 4.35954 4.43147 4.57587 4.68386 4.70030 4.72467 4.83095 4.98354 5.05922 5.13643 5.18877 5.21563 5.35566 5.38583 5.50390 5.55975 5.66109 5.78434 5.91162 5.93595 5.95832 5.97961 6.08153 6.21435 6.36227 6.44432 6.45274 6.62630 6.74712 6.84184 7.42166 7.69391 7.73840 8.13591 8.40048 9.51457 10.08486 10.43310 11.43945 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.041336 B = 0.002184 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.207900 B =12819.270499 C =13042.739843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.138 4.138 3 C 0.094 3.906 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.110 4.110 7 C -0.100 4.100 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.725 5.725 11 C 0.126 3.874 12 C -0.110 4.110 13 H 0.076 0.924 14 C -0.141 4.141 15 C 0.160 3.840 16 N -0.731 5.731 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.063 4.063 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 18.355 14.926 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.063 4.063 4 N -0.188 5.188 5 C -0.051 4.051 6 C -0.112 4.112 7 C -0.141 4.141 8 C 0.296 3.704 9 O -0.412 6.412 10 N -0.377 5.377 11 C 0.003 3.997 12 C -0.129 4.129 13 H 0.095 0.905 14 C -0.199 4.199 15 C 0.032 3.968 16 N -0.376 5.376 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.089 4.089 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.574 19.612 14.046 27.203 hybrid contribution 0.108 -1.887 -0.298 1.913 sum -12.466 17.725 13.748 25.663 Atomic orbital electron populations 1.20719 0.90173 1.03297 1.02501 1.20902 0.97598 0.94076 1.01364 1.22648 0.89994 0.97430 0.96228 1.67672 1.08371 1.31066 1.11705 1.22573 1.00168 0.87098 0.95250 1.20277 0.94277 0.95441 1.01225 1.20617 1.01928 0.96106 0.95403 1.20433 0.78256 0.80750 0.90956 1.90743 1.50760 1.53428 1.46264 1.46072 1.55486 1.26402 1.09717 1.21420 0.99916 0.96599 0.81780 1.21551 0.96242 0.95495 0.99638 0.90541 1.21793 0.96578 1.02684 0.98823 1.20580 0.95710 0.88813 0.91716 1.42347 1.69969 1.18483 1.06756 1.19285 1.30988 1.00220 0.86407 0.91095 1.24742 1.01560 0.97908 0.96900 1.69661 1.46145 1.18693 1.23827 0.86106 0.77595 0.79527 0.82913 1.20533 1.21864 1.21878 1.21332 0.93273 0.98323 0.96007 0.90921 0.91116 0.91245 0.82971 0.83027 0.87652 0.87459 0.76452 0.91353 0.91422 0.91142 0.92820 0.93885 0.96150 0.95986 0.78213 0.93575 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.04 36.00 0.36 -0.27 16 2 C -0.14 -1.20 5.90 -104.48 -0.62 -1.82 16 3 C 0.09 0.91 10.86 -17.55 -0.19 0.72 16 4 N -0.48 -5.61 10.36 -13.25 -0.14 -5.75 16 5 C 0.11 1.13 10.86 -17.54 -0.19 0.94 16 6 C -0.11 -1.07 4.39 -104.48 -0.46 -1.52 16 7 C -0.10 -0.75 5.86 -29.03 -0.17 -0.92 16 8 C 0.51 5.87 7.82 -10.98 -0.09 5.78 16 9 O -0.54 -8.62 16.03 5.56 0.09 -8.53 16 10 N -0.72 -7.68 5.28 -60.29 -0.32 -8.00 16 11 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 12 C -0.11 -1.64 2.46 -90.62 -0.22 -1.86 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 14 C -0.14 -2.01 8.94 37.16 0.33 -1.67 16 15 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 16 N -0.73 -18.15 5.33 -59.91 -0.32 -18.47 16 17 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C -0.06 -0.59 9.55 -39.28 -0.37 -0.96 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 29 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.11 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.11 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.40 3.21 7.65 -40.82 -0.31 2.90 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.48 7.18 -51.93 -0.37 0.10 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 9.88 6.85 -40.82 -0.28 9.60 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -34.73 362.37 -8.22 -42.96 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.79 Total: 6.36 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.91 Total: -4.14 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.05 Total: -59.47 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.73 -8.22 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.928 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds