Wall clock time and date at job start Tue Mar 31 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 120.41531 * 2 1 4 4 N 1.31857 * 120.76123 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.72516 * 359.70279 * 4 3 2 6 6 C 1.38183 * 120.76470 * 0.58174 * 5 4 3 7 7 C 1.50708 * 120.41814 * 179.70657 * 6 5 4 8 8 C 1.50700 * 109.46791 * 269.72675 * 7 6 5 9 9 O 1.21277 * 120.00478 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99623 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00109 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47391 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47112 * 305.00167 * 12 11 10 14 14 C 1.53001 * 109.47100 * 64.99897 * 12 11 10 15 15 C 1.53003 * 109.47014 * 184.99488 * 12 11 10 16 16 N 1.46499 * 109.46708 * 174.99880 * 15 12 11 17 17 C 1.36935 * 119.99926 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00369 * 179.73019 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47154 * 89.99247 * 21 19 17 23 23 H 1.48496 * 109.47375 * 209.99772 * 21 19 17 24 24 H 1.48502 * 109.46736 * 329.99467 * 21 19 17 25 25 C 1.38620 * 120.42164 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47067 * 269.97739 * 1 2 3 27 27 H 1.08999 * 109.47303 * 29.98128 * 1 2 3 28 28 H 1.08996 * 109.46592 * 149.98347 * 1 2 3 29 29 H 1.08005 * 119.61936 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.61609 * 180.31655 * 5 4 3 31 31 H 1.08996 * 109.46984 * 149.72555 * 7 6 5 32 32 H 1.09005 * 109.46800 * 29.72293 * 7 6 5 33 33 H 0.97005 * 120.00431 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47266 * 59.99449 * 11 10 8 35 35 H 1.08997 * 109.46950 * 299.99791 * 11 10 8 36 36 H 1.09005 * 109.47003 * 300.00163 * 14 12 11 37 37 H 1.08999 * 109.47109 * 59.99648 * 14 12 11 38 38 H 1.08996 * 109.47478 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.46692 * 55.00382 * 15 12 11 40 40 H 1.08994 * 109.47584 * 295.00246 * 15 12 11 41 41 H 0.97005 * 120.00261 * 0.02562 * 16 15 12 42 42 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.79068 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5254 1.2001 -0.0005 5 6 4.2257 0.0825 0.0048 6 6 3.5948 -1.1469 -0.0009 7 6 4.4028 -2.4191 -0.0015 8 6 4.6716 -2.8428 -1.4225 9 8 4.2484 -2.1776 -2.3440 10 7 5.3814 -3.9615 -1.6692 11 6 5.6433 -4.3732 -3.0506 12 6 6.4634 -5.6648 -3.0512 13 1 7.3688 -5.5206 -2.4616 14 6 5.6332 -6.7964 -2.4421 15 6 6.8429 -6.0273 -4.4884 16 7 7.7269 -7.1955 -4.4801 17 6 8.1995 -7.7049 -5.6600 18 1 7.9201 -7.2457 -6.5968 19 6 9.0416 -8.8083 -5.6520 20 7 9.3863 -9.3647 -4.5101 21 14 9.6868 -9.5028 -7.2616 22 1 10.9686 -8.8383 -7.6089 23 1 9.9100 -10.9637 -7.1163 24 1 8.6946 -9.2584 -8.3391 25 6 2.2089 -1.1954 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3632 -0.8898 -0.5141 29 1 1.6674 2.1278 -0.0004 30 1 5.3047 0.1288 0.0094 31 1 3.8465 -3.2030 0.5124 32 1 5.3491 -2.2487 0.5120 33 1 5.7197 -4.4939 -0.9322 34 1 6.2002 -3.5893 -3.5640 35 1 4.6972 -4.5429 -3.5646 36 1 5.3627 -6.5381 -1.4182 37 1 4.7277 -6.9406 -3.0315 38 1 6.2175 -7.7165 -2.4420 39 1 7.3575 -5.1855 -4.9516 40 1 5.9410 -6.2582 -5.0551 41 1 7.9775 -7.6082 -3.6387 42 1 9.9751 -10.1356 -4.5043 43 1 1.6889 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:05 Heat of formation + Delta-G solvation = -10.921412 kcal Electronic energy + Delta-G solvation = -21967.501230 eV Core-core repulsion = 18626.164433 eV Total energy + Delta-G solvation = -3341.336797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73751 -39.53077 -36.88995 -34.39927 -33.90407 -33.80868 -32.49559 -30.15166 -28.60776 -27.59030 -26.38123 -25.18926 -23.49766 -22.60120 -21.69344 -20.55406 -19.77323 -17.47605 -17.20873 -16.97897 -16.79876 -16.19176 -15.49358 -14.81368 -14.59957 -14.41833 -14.39107 -13.81646 -13.66099 -13.46776 -13.31003 -13.10238 -12.95679 -12.87910 -12.77089 -12.48841 -12.21250 -12.03712 -11.72576 -11.08518 -10.92822 -10.73460 -10.58939 -10.45723 -10.17661 -10.02878 -9.78213 -9.69890 -9.65446 -9.07896 -9.04530 -8.89275 -6.94121 -5.78711 -3.07117 0.82600 1.03882 2.53490 3.08550 3.42956 3.48259 3.49769 3.60533 4.11288 4.36068 4.43011 4.57881 4.68145 4.69939 4.72548 4.82863 4.98654 5.05483 5.13592 5.19033 5.21152 5.35340 5.38475 5.50305 5.56195 5.65830 5.78085 5.91060 5.92950 5.96482 5.97565 6.08258 6.21105 6.35872 6.44424 6.45310 6.62319 6.74828 6.84192 7.42219 7.69114 7.74042 8.13634 8.40450 9.51751 10.08802 10.43625 11.44261 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.043730 B = 0.002162 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.136482 B =12950.488927 C =12984.835754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.094 3.906 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.110 4.110 7 C -0.100 4.100 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.725 5.725 11 C 0.127 3.873 12 C -0.110 4.110 13 H 0.077 0.923 14 C -0.141 4.141 15 C 0.160 3.840 16 N -0.731 5.731 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.063 4.063 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.793 16.361 14.928 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C -0.063 4.063 4 N -0.188 5.188 5 C -0.051 4.051 6 C -0.112 4.112 7 C -0.141 4.141 8 C 0.296 3.704 9 O -0.412 6.412 10 N -0.377 5.377 11 C 0.003 3.997 12 C -0.129 4.129 13 H 0.095 0.905 14 C -0.198 4.198 15 C 0.032 3.968 16 N -0.375 5.375 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.089 4.089 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.624 17.618 14.053 27.422 hybrid contribution 0.302 -1.750 -0.306 1.802 sum -15.322 15.868 13.747 25.991 Atomic orbital electron populations 1.20719 0.90179 1.03284 1.02494 1.20900 0.97592 0.94080 1.01392 1.22655 0.89997 0.97428 0.96218 1.67670 1.08365 1.31073 1.11689 1.22577 1.00188 0.87095 0.95212 1.20283 0.94274 0.95445 1.01225 1.20618 1.01938 0.96093 0.95404 1.20430 0.78284 0.80721 0.90956 1.90742 1.50765 1.53435 1.46254 1.46072 1.55561 1.26325 1.09718 1.21419 1.00069 0.96444 0.81783 1.21553 0.98319 0.93412 0.99654 0.90505 1.21790 1.00081 0.99182 0.98796 1.20577 0.93711 0.90816 0.91708 1.42337 1.56303 1.32142 1.06759 1.19239 1.22479 1.08866 0.86395 0.91156 1.24741 1.00630 0.98814 0.96899 1.69654 1.39961 1.24867 1.23852 0.86171 0.78853 0.78134 0.82938 1.21719 1.21778 1.20748 1.21324 0.93267 0.98307 0.96039 0.90927 0.91117 0.91261 0.82968 0.83008 0.87669 0.87441 0.76452 0.91371 0.91404 0.93916 0.92855 0.91142 0.96132 0.96016 0.78210 0.93529 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.04 36.01 0.36 -0.27 16 2 C -0.14 -1.20 5.90 -104.48 -0.62 -1.82 16 3 C 0.09 0.91 10.86 -17.54 -0.19 0.72 16 4 N -0.48 -5.63 10.36 -13.25 -0.14 -5.77 16 5 C 0.11 1.14 10.86 -17.55 -0.19 0.95 16 6 C -0.11 -1.07 4.39 -104.48 -0.46 -1.52 16 7 C -0.10 -0.75 5.86 -29.03 -0.17 -0.92 16 8 C 0.51 5.87 7.82 -10.99 -0.09 5.78 16 9 O -0.54 -8.63 16.03 5.56 0.09 -8.54 16 10 N -0.72 -7.68 5.28 -60.30 -0.32 -8.00 16 11 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 12 C -0.11 -1.64 2.46 -90.62 -0.22 -1.86 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 15 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 16 N -0.73 -18.16 5.33 -59.91 -0.32 -18.48 16 17 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.06 -0.58 9.55 -39.28 -0.37 -0.96 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.11 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.11 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.40 3.21 7.66 -40.82 -0.31 2.90 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -34.73 362.37 -8.22 -42.95 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.79 Total: 6.38 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.91 Total: -4.12 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.05 Total: -59.51 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.73 -8.22 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.031 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds