Wall clock time and date at job start Tue Mar 31 2020 06:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38234 * 120.41531 * 2 1 4 4 N 1.31857 * 120.76123 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.72516 * 359.70279 * 4 3 2 6 6 C 1.38183 * 120.76470 * 0.58174 * 5 4 3 7 7 C 1.50708 * 120.41814 * 179.70657 * 6 5 4 8 8 C 1.50700 * 109.46791 * 269.72675 * 7 6 5 9 9 O 1.21277 * 120.00478 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99623 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00109 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47391 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47112 * 305.00167 * 12 11 10 14 14 C 1.53001 * 109.47100 * 64.99897 * 12 11 10 15 15 C 1.53003 * 109.47014 * 184.99488 * 12 11 10 16 16 N 1.46499 * 109.46708 * 174.99880 * 15 12 11 17 17 C 1.36935 * 119.99926 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00369 * 179.73019 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47154 * 89.99247 * 21 19 17 23 23 H 1.48496 * 109.47375 * 209.99772 * 21 19 17 24 24 H 1.48502 * 109.46736 * 329.99467 * 21 19 17 25 25 C 1.38620 * 120.42164 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.47067 * 269.97739 * 1 2 3 27 27 H 1.08999 * 109.47303 * 29.98128 * 1 2 3 28 28 H 1.08996 * 109.46592 * 149.98347 * 1 2 3 29 29 H 1.08005 * 119.61936 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.61609 * 180.31655 * 5 4 3 31 31 H 1.08996 * 109.46984 * 149.72555 * 7 6 5 32 32 H 1.09005 * 109.46800 * 29.72293 * 7 6 5 33 33 H 0.97005 * 120.00431 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47266 * 59.99449 * 11 10 8 35 35 H 1.08997 * 109.46950 * 299.99791 * 11 10 8 36 36 H 1.09005 * 109.47003 * 300.00163 * 14 12 11 37 37 H 1.08999 * 109.47109 * 59.99648 * 14 12 11 38 38 H 1.08996 * 109.47478 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.46692 * 55.00382 * 15 12 11 40 40 H 1.08994 * 109.47584 * 295.00246 * 15 12 11 41 41 H 0.97005 * 120.00261 * 0.02562 * 16 15 12 42 42 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.79068 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5254 1.2001 -0.0005 5 6 4.2257 0.0825 0.0048 6 6 3.5948 -1.1469 -0.0009 7 6 4.4028 -2.4191 -0.0015 8 6 4.6716 -2.8428 -1.4225 9 8 4.2484 -2.1776 -2.3440 10 7 5.3814 -3.9615 -1.6692 11 6 5.6433 -4.3732 -3.0506 12 6 6.4634 -5.6648 -3.0512 13 1 7.3688 -5.5206 -2.4616 14 6 5.6332 -6.7964 -2.4421 15 6 6.8429 -6.0273 -4.4884 16 7 7.7269 -7.1955 -4.4801 17 6 8.1995 -7.7049 -5.6600 18 1 7.9201 -7.2457 -6.5968 19 6 9.0416 -8.8083 -5.6520 20 7 9.3863 -9.3647 -4.5101 21 14 9.6868 -9.5028 -7.2616 22 1 10.9686 -8.8383 -7.6089 23 1 9.9100 -10.9637 -7.1163 24 1 8.6946 -9.2584 -8.3391 25 6 2.2089 -1.1954 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3632 -0.8898 -0.5141 29 1 1.6674 2.1278 -0.0004 30 1 5.3047 0.1288 0.0094 31 1 3.8465 -3.2030 0.5124 32 1 5.3491 -2.2487 0.5120 33 1 5.7197 -4.4939 -0.9322 34 1 6.2002 -3.5893 -3.5640 35 1 4.6972 -4.5429 -3.5646 36 1 5.3627 -6.5381 -1.4182 37 1 4.7277 -6.9406 -3.0315 38 1 6.2175 -7.7165 -2.4420 39 1 7.3575 -5.1855 -4.9516 40 1 5.9410 -6.2582 -5.0551 41 1 7.9775 -7.6082 -3.6387 42 1 9.9751 -10.1356 -4.5043 43 1 1.6889 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753628053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:04 Heat of formation + Delta-G solvation = -34.774181 kcal Electronic energy + Delta-G solvation = -21968.535564 eV Core-core repulsion = 18626.164433 eV Total energy + Delta-G solvation = -3342.371131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47351 -40.43983 -38.23843 -35.96203 -34.59572 -34.48026 -34.03976 -31.92840 -29.40213 -28.15888 -27.65614 -26.76394 -24.50571 -24.02067 -22.52822 -21.58263 -20.94810 -19.21225 -18.02734 -17.84599 -17.66936 -17.29173 -16.50661 -16.49777 -15.68579 -15.49751 -15.33970 -15.20517 -14.89441 -14.48523 -14.20468 -14.12042 -13.96156 -13.70638 -13.56446 -13.51455 -13.26126 -13.04740 -12.93815 -12.80529 -12.32337 -12.17588 -12.15627 -11.99211 -11.70609 -11.65300 -11.07214 -10.94988 -10.49375 -10.40027 -10.07499 -9.72260 -8.99984 -7.96191 -5.24335 0.13736 0.35048 1.47385 1.48644 1.57147 1.66420 2.20760 2.56260 2.88237 3.37400 3.48203 3.71636 3.74116 3.85650 3.96723 3.98156 4.07252 4.08913 4.10909 4.28033 4.35918 4.46636 4.55776 4.64784 4.71371 4.78597 4.81285 4.83851 4.92668 4.94899 5.06349 5.13054 5.20064 5.26475 5.34322 5.34770 5.43327 5.49189 5.51150 5.81078 6.26716 6.59148 7.03169 7.28627 7.33580 8.08690 8.33244 9.27109 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.043730 B = 0.002162 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.136482 B =12950.488927 C =12984.835754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C 0.077 3.923 4 N -0.511 5.511 5 C 0.083 3.917 6 C -0.118 4.118 7 C -0.090 4.090 8 C 0.511 3.489 9 O -0.586 6.586 10 N -0.713 5.713 11 C 0.139 3.861 12 C -0.093 4.093 13 H 0.080 0.920 14 C -0.135 4.135 15 C 0.155 3.845 16 N -0.741 5.741 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.272 1.272 25 C -0.077 4.077 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.417 0.583 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.017 0.983 40 H 0.020 0.980 41 H 0.377 0.623 42 H 0.252 0.748 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.854 16.423 15.884 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C -0.080 4.080 4 N -0.219 5.219 5 C -0.073 4.073 6 C -0.120 4.120 7 C -0.130 4.130 8 C 0.299 3.701 9 O -0.466 6.466 10 N -0.366 5.366 11 C 0.014 3.986 12 C -0.112 4.112 13 H 0.098 0.902 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.384 5.384 17 C -0.379 4.379 18 H 0.090 0.910 19 C -0.267 4.267 20 N -0.617 5.617 21 Si 0.802 3.198 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.197 1.197 25 C -0.103 4.103 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.188 0.812 30 H 0.177 0.823 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.255 0.745 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.210 0.790 42 H 0.061 0.939 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.696 17.691 15.031 28.595 hybrid contribution 0.569 -1.698 -0.604 1.890 sum -16.127 15.994 14.427 26.907 Atomic orbital electron populations 1.20774 0.88080 1.03922 1.03639 1.21251 0.99175 0.93658 1.00120 1.23062 0.89714 0.98834 0.96384 1.67636 1.09523 1.32004 1.12764 1.22846 1.00823 0.87577 0.96087 1.20513 0.94849 0.95858 1.00792 1.20671 1.03551 0.95923 0.92821 1.21091 0.77038 0.79879 0.92093 1.90730 1.52797 1.54922 1.48175 1.45902 1.55265 1.26442 1.08965 1.21076 0.99091 0.95015 0.83410 1.21328 0.98900 0.94500 0.96517 0.90178 1.21726 0.99114 0.97397 1.00996 1.20737 0.92508 0.88856 0.95085 1.42502 1.56908 1.33383 1.05640 1.19615 1.21986 1.08768 0.87526 0.90980 1.25542 1.01501 0.99562 1.00077 1.69796 1.40862 1.25335 1.25742 0.85152 0.78264 0.76981 0.79436 1.21438 1.21999 1.19655 1.21690 0.93441 0.99305 0.95815 0.89403 0.90245 0.90862 0.81181 0.82253 0.84447 0.84676 0.74536 0.92632 0.92123 0.90117 0.93134 0.93987 0.96488 0.96243 0.79006 0.93933 0.83248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.04 71.24 0.72 -0.30 16 2 C -0.14 -2.26 5.90 -19.77 -0.12 -2.38 16 3 C 0.08 1.45 10.86 84.69 0.92 2.37 16 4 N -0.51 -11.99 10.36 -195.83 -2.03 -14.02 16 5 C 0.08 1.75 10.86 84.67 0.92 2.66 16 6 C -0.12 -2.10 4.39 -19.77 -0.09 -2.19 16 7 C -0.09 -1.09 5.86 29.10 0.17 -0.92 16 8 C 0.51 10.71 7.82 87.66 0.69 11.39 16 9 O -0.59 -18.49 16.03 -3.02 -0.05 -18.54 16 10 N -0.71 -13.35 5.28 -463.07 -2.45 -15.79 16 11 C 0.14 3.52 5.06 86.38 0.44 3.96 16 12 C -0.09 -2.67 2.46 -10.79 -0.03 -2.70 16 13 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.13 -3.60 8.94 71.98 0.64 -2.95 16 15 C 0.16 6.08 5.65 86.38 0.49 6.57 16 16 N -0.74 -37.06 5.33 -343.46 -1.83 -38.89 16 17 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 20 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 21 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 C -0.08 -1.28 9.55 22.47 0.21 -1.07 16 26 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 28 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.14 0.82 8.10 -2.39 -0.02 0.80 16 32 H 0.14 0.92 8.09 -2.38 -0.02 0.90 16 33 H 0.42 5.18 7.66 -92.70 -0.71 4.47 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.52 7.18 -2.38 -0.02 1.50 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.04 1.37 7.18 -2.39 -0.02 1.36 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.38 19.66 6.85 -92.70 -0.63 19.02 16 42 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -76.16 362.37 1.89 -74.27 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.34 Total: 25.28 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.27 Total: -2.33 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -6.02 Total: -126.82 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.05 Total: -18.54 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.16 1.89 -74.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.494 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds