Wall clock time and date at job start Tue Mar 31 2020 07:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46907 * 110.99975 * 2 1 4 4 C 1.52993 * 109.46947 * 66.04832 * 3 2 1 5 5 C 1.50703 * 109.46937 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00161 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00118 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00017 * 359.97438 * 7 5 4 9 9 C 1.46498 * 119.99897 * 179.97438 * 7 5 4 10 10 C 1.50693 * 109.46868 * 90.00279 * 9 7 5 11 11 H 1.08001 * 120.00342 * 0.02562 * 10 9 7 12 12 C 1.37884 * 119.99911 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00105 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00197 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47549 * 59.99846 * 14 12 10 16 16 H 1.48501 * 109.47529 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46869 * 299.99981 * 14 12 10 18 18 C 1.46904 * 111.00121 * 236.04413 * 2 1 3 19 19 C 1.50695 * 109.47190 * 293.95627 * 18 2 1 20 20 C 1.38678 * 120.41675 * 270.25239 * 19 18 2 21 21 C 1.38627 * 118.41930 * 180.24221 * 20 19 18 22 22 C 1.38232 * 119.16085 * 359.75178 * 21 20 19 23 23 N 1.31857 * 120.76541 * 359.97438 * 22 21 20 24 24 C 1.31889 * 121.72235 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.46973 * 183.95386 * 1 2 3 26 26 H 1.08998 * 109.46823 * 303.95614 * 1 2 3 27 27 H 1.08996 * 109.47167 * 63.95467 * 1 2 3 28 28 H 1.09000 * 109.46788 * 186.04531 * 3 2 1 29 29 H 1.08994 * 109.46987 * 306.04018 * 3 2 1 30 30 H 1.09000 * 109.47131 * 299.99489 * 4 3 2 31 31 H 1.08994 * 109.47941 * 59.99771 * 4 3 2 32 32 H 1.09003 * 109.47513 * 89.99437 * 8 7 5 33 33 H 1.08993 * 109.47294 * 209.99654 * 8 7 5 34 34 H 1.09006 * 109.47233 * 330.00130 * 8 7 5 35 35 H 1.09001 * 109.46791 * 210.00320 * 9 7 5 36 36 H 1.08995 * 109.47471 * 330.00041 * 9 7 5 37 37 H 0.96996 * 120.00406 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.46737 * 173.95446 * 18 2 1 39 39 H 1.08996 * 109.46745 * 53.95365 * 18 2 1 40 40 H 1.07994 * 120.78944 * 359.96926 * 20 19 18 41 41 H 1.07997 * 120.42083 * 179.72800 * 21 20 19 42 42 H 1.07999 * 119.61954 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.61237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1711 3.4646 1.3180 6 8 2.7865 3.8779 0.3582 7 7 1.9697 4.2637 2.3844 8 6 1.2258 3.7647 3.5436 9 6 2.4946 5.6314 2.3843 10 6 1.4627 6.5655 1.8069 11 1 0.5108 6.1791 1.4737 12 6 1.7333 7.9137 1.7049 13 7 2.8922 8.3843 2.1111 14 14 0.4539 9.0717 0.9898 15 1 -0.7805 9.0149 1.8133 16 1 0.9860 10.4581 0.9896 17 1 0.1392 8.6625 -0.4026 18 6 1.9955 -0.7660 -1.1376 19 6 1.6370 -2.2204 -0.9729 20 6 2.4878 -3.0809 -0.2955 21 6 2.1194 -4.4117 -0.1727 22 6 0.9224 -4.8326 -0.7212 23 7 0.1354 -3.9849 -1.3541 24 6 0.4537 -2.7122 -1.4899 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4512 -0.9233 28 1 3.0798 1.3444 -0.1082 29 1 1.5612 1.9273 -0.8309 30 1 0.5473 2.0845 1.4265 31 1 2.0658 1.5016 2.1492 32 1 1.9178 3.3044 4.2488 33 1 0.7104 4.5935 4.0289 34 1 0.4956 3.0247 3.2158 35 1 2.7255 5.9320 3.4063 36 1 3.4008 5.6728 1.7800 37 1 3.0828 9.3326 2.0390 38 1 3.0798 -0.6611 -1.1755 39 1 1.5612 -0.3873 -2.0627 40 1 3.4172 -2.7237 0.1226 41 1 2.7598 -5.1109 0.3445 42 1 0.6280 -5.8677 -0.6295 43 1 -0.2163 -2.0477 -2.0153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036771278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:28 Heat of formation + Delta-G solvation = -17.480867 kcal Electronic energy + Delta-G solvation = -22521.690984 eV Core-core repulsion = 19180.069748 eV Total energy + Delta-G solvation = -3341.621237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.19765 -40.67876 -38.47301 -36.57866 -34.76641 -34.02615 -32.87257 -31.52594 -29.62246 -28.42756 -27.35322 -26.41707 -24.73700 -24.37176 -22.90022 -21.83239 -19.91085 -18.70638 -18.01963 -17.93858 -17.35061 -17.16149 -16.87784 -16.42413 -16.18761 -16.04826 -15.60667 -14.92248 -14.71408 -14.52028 -14.12301 -13.97174 -13.92933 -13.83717 -13.60775 -13.44325 -13.23922 -12.86591 -12.80122 -12.78018 -12.62925 -12.49835 -12.20602 -12.15647 -11.90190 -11.71032 -10.70813 -10.64943 -10.59682 -10.36203 -9.96813 -9.41563 -9.36255 -8.22935 -6.38073 0.17081 0.39739 1.35849 1.40062 1.47444 1.85437 2.28176 2.41722 2.79208 3.06211 3.16592 3.55649 3.79261 3.84638 3.91649 4.01898 4.12242 4.12779 4.17202 4.38039 4.43548 4.48747 4.61012 4.64542 4.69557 4.73934 4.77306 4.90503 4.93392 4.96836 4.98638 5.04321 5.06901 5.23302 5.24623 5.40115 5.55676 5.80366 5.84247 5.95235 6.00630 6.05715 6.69073 6.80233 7.05206 7.27685 7.49331 8.83897 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.033942 B = 0.002606 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.734559 B =10742.729904 C =10966.766173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.534 5.534 3 C 0.080 3.920 4 C -0.115 4.115 5 C 0.495 3.505 6 O -0.601 6.601 7 N -0.612 5.612 8 C 0.079 3.921 9 C 0.258 3.742 10 C -0.543 4.543 11 H 0.053 0.947 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.968 3.032 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.096 3.904 19 C -0.130 4.130 20 C -0.063 4.063 21 C -0.169 4.169 22 C 0.083 3.917 23 N -0.514 5.514 24 C 0.092 3.908 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.025 0.975 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.023 0.977 36 H -0.003 1.003 37 H 0.267 0.733 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.148 0.852 41 H 0.162 0.838 42 H 0.176 0.824 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 -25.845 -1.238 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.258 5.258 3 C -0.048 4.048 4 C -0.155 4.155 5 C 0.284 3.716 6 O -0.483 6.483 7 N -0.343 5.343 8 C -0.063 4.063 9 C 0.136 3.864 10 C -0.582 4.582 11 H 0.071 0.929 12 C -0.193 4.193 13 N -0.568 5.568 14 Si 0.792 3.208 15 H -0.184 1.184 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.032 4.032 19 C -0.132 4.132 20 C -0.090 4.090 21 C -0.188 4.188 22 C -0.074 4.074 23 N -0.223 5.223 24 C -0.065 4.065 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.041 0.959 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.193 0.807 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.781 -25.988 -1.595 26.472 hybrid contribution 0.239 1.891 -0.750 2.048 sum -4.542 -24.097 -2.345 24.633 Atomic orbital electron populations 1.22575 0.86799 1.02576 1.01357 1.62011 1.08688 1.12427 1.42665 1.21648 1.00330 0.87314 0.95515 1.21559 1.03278 0.89857 1.00839 1.21377 0.79793 0.88749 0.81724 1.90631 1.44384 1.77504 1.35776 1.48210 1.54360 1.13901 1.17866 1.21931 0.96496 1.00346 0.87552 1.18746 0.93656 0.78095 0.95868 1.21673 1.01605 0.93023 1.41868 0.92890 1.25884 0.97815 0.99966 0.95630 1.70043 1.23861 1.14859 1.48078 0.85465 0.79141 0.77405 0.78784 1.18402 1.20311 1.20344 1.20991 1.01254 0.88927 0.91997 1.20741 0.96301 0.96310 0.99897 1.21785 0.99643 0.93251 0.94287 1.22467 0.98448 0.96828 1.01052 1.23236 0.90973 1.00250 0.92936 1.67704 1.34339 1.04151 1.16138 1.22793 0.94694 0.92018 0.97012 0.90870 0.90311 0.95310 0.90879 0.95687 0.87295 0.86214 0.91093 0.91718 0.88715 0.95912 0.98479 0.92374 0.89046 0.93315 0.83388 0.82020 0.80689 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 8.96 127.69 1.14 1.41 16 2 N -0.53 -10.90 4.75 -927.06 -4.41 -15.31 16 3 C 0.08 2.10 4.25 86.30 0.37 2.47 16 4 C -0.12 -3.09 4.18 29.85 0.12 -2.96 16 5 C 0.49 20.26 7.67 87.66 0.67 20.93 16 6 O -0.60 -30.99 15.56 -3.02 -0.05 -31.04 16 7 N -0.61 -25.94 2.86 -851.15 -2.43 -28.37 16 8 C 0.08 2.30 10.24 127.77 1.31 3.61 16 9 C 0.26 14.08 5.16 85.63 0.44 14.52 16 10 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 11 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 12 C 0.01 0.35 5.46 84.66 0.46 0.81 16 13 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 14 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 15 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 C 0.10 1.74 5.14 85.55 0.44 2.18 16 19 C -0.13 -2.23 4.89 -19.77 -0.10 -2.33 16 20 C -0.06 -0.93 9.86 22.47 0.22 -0.71 16 21 C -0.17 -2.07 10.11 22.36 0.23 -1.85 16 22 C 0.08 1.22 11.18 84.69 0.95 2.17 16 23 N -0.51 -10.20 10.36 -195.83 -2.03 -12.23 16 24 C 0.09 1.69 9.15 84.67 0.77 2.46 16 25 H 0.07 1.27 6.17 -2.39 -0.01 1.26 16 26 H 0.08 1.35 6.30 -2.39 -0.02 1.33 16 27 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 2.06 7.89 -2.39 -0.02 2.04 16 29 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 30 H 0.11 2.47 5.73 -2.39 -0.01 2.45 16 31 H 0.12 2.64 8.11 -2.39 -0.02 2.62 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 34 H 0.09 2.06 6.44 -2.38 -0.02 2.04 16 35 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 36 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.09 1.57 7.89 -2.39 -0.02 1.55 16 39 H 0.05 0.88 8.07 -2.39 -0.02 0.86 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.15 2.51 8.04 -2.91 -0.02 2.49 16 Total: -1.00 -76.64 356.18 1.65 -74.98 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.98 Total: 9.81 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 7.27 Total: 11.40 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -8.58 Total: -112.25 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.05 Total: -31.04 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.64 1.65 -74.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036771278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.501 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds