Wall clock time and date at job start Tue Mar 31 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36338 * 125.63640 * 2 1 4 4 C 1.34847 * 108.21632 * 180.02562 * 3 2 1 5 5 C 1.40889 * 107.42269 * 359.77388 * 4 3 2 6 6 C 1.34855 * 107.41211 * 0.37329 * 5 4 3 7 7 C 1.50707 * 125.88946 * 179.88314 * 6 5 4 8 8 H 1.08997 * 110.33028 * 242.44289 * 7 6 5 9 9 C 1.54899 * 110.46493 * 120.12399 * 7 6 5 10 10 C 1.55142 * 101.65289 * 204.05192 * 9 7 6 11 11 C 1.54320 * 103.01667 * 35.65659 * 10 9 7 12 12 N 1.47443 * 107.23196 * 337.71604 * 11 10 9 13 13 C 1.46901 * 110.99640 * 236.74637 * 12 11 10 14 14 C 1.50703 * 109.47161 * 293.96465 * 13 12 11 15 15 O 1.21281 * 119.99667 * 354.31465 * 14 13 12 16 16 N 1.34769 * 120.00237 * 174.31454 * 14 13 12 17 17 C 1.46498 * 120.00424 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47822 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99487 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00671 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99462 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00392 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47362 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47249 * 119.99855 * 22 20 18 25 25 H 1.48502 * 109.47592 * 239.99962 * 22 20 18 26 26 H 1.08994 * 109.46668 * 269.97117 * 1 2 3 27 27 H 1.08997 * 109.46509 * 29.97237 * 1 2 3 28 28 H 1.08997 * 109.47083 * 149.97238 * 1 2 3 29 29 H 1.07999 * 125.88749 * 0.06261 * 3 2 1 30 30 H 1.08010 * 126.29050 * 180.02562 * 4 3 2 31 31 H 1.07995 * 126.29918 * 180.24080 * 5 4 3 32 32 H 1.08998 * 110.99436 * 322.14784 * 9 7 6 33 33 H 1.09006 * 110.99068 * 85.92433 * 9 7 6 34 34 H 1.09001 * 110.70615 * 277.26914 * 10 9 7 35 35 H 1.09001 * 110.70512 * 154.03442 * 10 9 7 36 36 H 1.08996 * 109.88702 * 218.31054 * 11 10 9 37 37 H 1.08999 * 109.88951 * 97.11848 * 11 10 9 38 38 H 1.09001 * 109.47717 * 53.96674 * 13 12 11 39 39 H 1.09007 * 109.47150 * 173.97113 * 13 12 11 40 40 H 0.97000 * 120.00231 * 0.02562 * 16 14 13 41 41 H 1.08998 * 109.47110 * 300.00463 * 17 16 14 42 42 H 1.09006 * 109.46731 * 60.00072 * 17 16 14 43 43 H 0.97000 * 119.99465 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 0.0044 6 6 2.2594 -1.1081 -0.0006 7 6 1.7819 -2.5375 -0.0005 8 1 1.2173 -2.7483 -0.9087 9 6 0.9140 -2.8185 1.2514 10 6 1.0659 -4.3553 1.3996 11 6 2.5245 -4.6043 0.9613 12 7 2.9284 -3.4632 0.1195 13 6 3.3784 -3.9179 -1.2029 14 6 4.6454 -4.7201 -1.0540 15 8 5.1826 -4.8096 0.0297 16 7 5.1815 -5.3382 -2.1249 17 6 6.4135 -6.1175 -1.9803 18 6 6.7992 -6.7002 -3.3155 19 1 6.1879 -6.5087 -4.1850 20 6 7.9323 -7.4777 -3.4271 21 7 8.6770 -7.7105 -2.3682 22 14 8.4099 -8.2005 -5.0820 23 1 7.4148 -7.7927 -6.1061 24 1 9.7530 -7.7010 -5.4712 25 1 8.4418 -9.6820 -4.9845 26 1 -0.3632 -0.0005 1.0276 27 1 -0.3632 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.9172 2.1324 0.0010 30 1 4.4167 1.3436 -0.0003 31 1 4.4165 -1.3438 0.0089 32 1 1.3098 -2.3009 2.1252 33 1 -0.1260 -2.5435 1.0753 34 1 0.3712 -4.8766 0.7410 35 1 0.9178 -4.6591 2.4359 36 1 2.5865 -5.5288 0.3874 37 1 3.1698 -4.6652 1.8377 38 1 2.6059 -4.5395 -1.6557 39 1 3.5684 -3.0535 -1.8392 40 1 4.7521 -5.2663 -2.9917 41 1 7.2135 -5.4695 -1.6224 42 1 6.2515 -6.9238 -1.2648 43 1 9.4744 -8.2572 -2.4468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057622989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:12 Heat of formation + Delta-G solvation = 23.055195 kcal Electronic energy + Delta-G solvation = -23259.709648 eV Core-core repulsion = 19919.846187 eV Total energy + Delta-G solvation = -3339.863461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28166 -39.36702 -37.81813 -34.09253 -33.01108 -32.33318 -31.92128 -30.76097 -27.85508 -26.91467 -26.39070 -25.73205 -22.55342 -21.60721 -21.35558 -20.16368 -19.46269 -18.87748 -17.30767 -16.87539 -16.30418 -15.48939 -15.40202 -15.28331 -14.81382 -14.59485 -14.05585 -13.88522 -13.41041 -13.23310 -13.07699 -12.96089 -12.67017 -12.46523 -12.22118 -12.13234 -11.88857 -11.85758 -11.69237 -11.30456 -11.19434 -11.09490 -10.91890 -10.86132 -10.74859 -10.28643 -9.34202 -8.95712 -8.70017 -8.48663 -8.21587 -7.87588 -7.80027 -6.13713 -4.20263 2.28642 2.85303 3.21603 3.25257 3.32258 3.35313 3.47650 3.74802 4.23615 4.38684 4.54233 4.57685 4.64735 4.84008 4.90182 4.95640 5.09785 5.13244 5.19726 5.22356 5.39414 5.39836 5.51836 5.61229 5.65309 5.73312 5.77415 5.83797 5.89932 6.03105 6.29707 6.45349 6.62016 6.92372 7.02628 7.22554 7.37054 7.40116 7.43157 7.51578 7.57294 7.72234 8.01129 8.69820 8.83865 9.19734 9.46686 10.96559 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.003223 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.957793 B = 8685.393085 C = 9262.879231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.452 5.452 3 C -0.024 4.024 4 C -0.203 4.203 5 C -0.163 4.163 6 C 0.021 3.979 7 C 0.146 3.854 8 H 0.059 0.941 9 C -0.121 4.121 10 C -0.144 4.144 11 C 0.056 3.944 12 N -0.495 5.495 13 C 0.031 3.969 14 C 0.499 3.501 15 O -0.536 6.536 16 N -0.717 5.717 17 C 0.252 3.748 18 C -0.542 4.542 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.132 0.868 31 H 0.143 0.857 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.025 0.975 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.379 14.000 4.185 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.129 5.129 3 C -0.153 4.153 4 C -0.228 4.228 5 C -0.187 4.187 6 C -0.090 4.090 7 C 0.036 3.964 8 H 0.077 0.923 9 C -0.159 4.159 10 C -0.183 4.183 11 C -0.072 4.072 12 N -0.219 5.219 13 C -0.100 4.100 14 C 0.282 3.718 15 O -0.413 6.413 16 N -0.366 5.366 17 C 0.131 3.869 18 C -0.580 4.580 19 H 0.081 0.919 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.174 0.826 30 H 0.150 0.850 31 H 0.161 0.839 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.221 0.779 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.741 14.059 5.257 24.799 hybrid contribution -0.492 -0.710 -1.766 1.966 sum -20.233 13.350 3.491 24.490 Atomic orbital electron populations 1.21963 0.78224 1.03808 1.02799 1.43733 1.05514 1.05688 1.58002 1.21667 0.90650 0.90851 1.12133 1.20971 0.95748 0.95553 1.10547 1.20820 0.95967 0.94284 1.07678 1.19947 0.90507 0.87364 1.11150 1.20695 0.90229 0.87953 0.97509 0.92327 1.22769 0.98692 0.96404 0.98073 1.22858 0.97564 0.95578 1.02250 1.22759 0.93950 0.92015 0.98429 1.62833 1.32474 1.14620 1.11955 1.22253 0.96291 0.99819 0.91671 1.20235 0.85920 0.80423 0.85193 1.90666 1.62548 1.61683 1.26380 1.46444 1.28814 1.51296 1.10069 1.19068 0.80284 0.90299 0.97252 1.21274 1.10027 1.32336 0.94367 0.91912 1.24957 0.95971 0.96019 0.97131 1.69993 1.15488 1.38011 1.28784 0.86371 0.78497 0.78800 0.83292 1.19661 1.20797 1.20845 0.91279 0.90238 0.90308 0.82594 0.84998 0.83947 0.90238 0.91186 0.91558 0.90493 0.92523 0.89478 0.92623 0.88196 0.77931 0.95550 0.95679 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 9.99 59.85 0.60 1.07 16 2 N -0.45 -4.79 3.15 -119.90 -0.38 -5.17 16 3 C -0.02 -0.26 11.43 -16.75 -0.19 -0.46 16 4 C -0.20 -2.65 10.86 -39.78 -0.43 -3.08 16 5 C -0.16 -2.43 10.18 -39.78 -0.40 -2.84 16 6 C 0.02 0.27 6.19 -81.78 -0.51 -0.24 16 7 C 0.15 1.71 2.38 -67.34 -0.16 1.55 16 8 H 0.06 0.63 7.81 -51.93 -0.41 0.23 16 9 C -0.12 -1.17 5.90 -24.60 -0.15 -1.32 16 10 C -0.14 -1.44 6.94 -24.91 -0.17 -1.62 16 11 C 0.06 0.78 5.59 -2.83 -0.02 0.76 16 12 N -0.49 -7.23 3.79 -226.18 -0.86 -8.09 16 13 C 0.03 0.47 5.02 -4.97 -0.02 0.44 16 14 C 0.50 10.08 7.27 -10.99 -0.08 10.00 16 15 O -0.54 -13.01 15.53 5.56 0.09 -12.92 16 16 N -0.72 -15.27 5.55 -61.47 -0.34 -15.61 16 17 C 0.25 6.75 5.43 -5.20 -0.03 6.73 16 18 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 19 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.44 7.50 -51.93 -0.39 0.05 16 29 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.14 2.43 7.82 -52.49 -0.41 2.01 16 32 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 33 H 0.07 0.51 7.46 -51.93 -0.39 0.12 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.84 7.24 -51.93 -0.38 0.46 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 39 H 0.10 1.41 8.12 -51.92 -0.42 0.99 16 40 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -33.71 353.48 -9.33 -43.04 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.91 Total: 5.52 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.98 Total: -2.50 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.84 Total: -54.46 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.71 -9.33 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057622989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.098 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds