Wall clock time and date at job start Tue Mar 31 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36338 * 125.63640 * 2 1 4 4 C 1.34847 * 108.21632 * 180.02562 * 3 2 1 5 5 C 1.40889 * 107.42269 * 359.77388 * 4 3 2 6 6 C 1.34855 * 107.41211 * 0.37329 * 5 4 3 7 7 C 1.50707 * 125.88946 * 179.88314 * 6 5 4 8 8 H 1.08997 * 110.33028 * 242.44289 * 7 6 5 9 9 C 1.54899 * 110.46493 * 120.12399 * 7 6 5 10 10 C 1.55142 * 101.65289 * 204.05192 * 9 7 6 11 11 C 1.54320 * 103.01667 * 35.65659 * 10 9 7 12 12 N 1.47443 * 107.23196 * 337.71604 * 11 10 9 13 13 C 1.46901 * 110.99640 * 236.74637 * 12 11 10 14 14 C 1.50703 * 109.47161 * 293.96465 * 13 12 11 15 15 O 1.21281 * 119.99667 * 354.31465 * 14 13 12 16 16 N 1.34769 * 120.00237 * 174.31454 * 14 13 12 17 17 C 1.46498 * 120.00424 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47822 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99487 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00671 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99462 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00392 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47362 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47249 * 119.99855 * 22 20 18 25 25 H 1.48502 * 109.47592 * 239.99962 * 22 20 18 26 26 H 1.08994 * 109.46668 * 269.97117 * 1 2 3 27 27 H 1.08997 * 109.46509 * 29.97237 * 1 2 3 28 28 H 1.08997 * 109.47083 * 149.97238 * 1 2 3 29 29 H 1.07999 * 125.88749 * 0.06261 * 3 2 1 30 30 H 1.08010 * 126.29050 * 180.02562 * 4 3 2 31 31 H 1.07995 * 126.29918 * 180.24080 * 5 4 3 32 32 H 1.08998 * 110.99436 * 322.14784 * 9 7 6 33 33 H 1.09006 * 110.99068 * 85.92433 * 9 7 6 34 34 H 1.09001 * 110.70615 * 277.26914 * 10 9 7 35 35 H 1.09001 * 110.70512 * 154.03442 * 10 9 7 36 36 H 1.08996 * 109.88702 * 218.31054 * 11 10 9 37 37 H 1.08999 * 109.88951 * 97.11848 * 11 10 9 38 38 H 1.09001 * 109.47717 * 53.96674 * 13 12 11 39 39 H 1.09007 * 109.47150 * 173.97113 * 13 12 11 40 40 H 0.97000 * 120.00231 * 0.02562 * 16 14 13 41 41 H 1.08998 * 109.47110 * 300.00463 * 17 16 14 42 42 H 1.09006 * 109.46731 * 60.00072 * 17 16 14 43 43 H 0.97000 * 119.99465 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 0.0044 6 6 2.2594 -1.1081 -0.0006 7 6 1.7819 -2.5375 -0.0005 8 1 1.2173 -2.7483 -0.9087 9 6 0.9140 -2.8185 1.2514 10 6 1.0659 -4.3553 1.3996 11 6 2.5245 -4.6043 0.9613 12 7 2.9284 -3.4632 0.1195 13 6 3.3784 -3.9179 -1.2029 14 6 4.6454 -4.7201 -1.0540 15 8 5.1826 -4.8096 0.0297 16 7 5.1815 -5.3382 -2.1249 17 6 6.4135 -6.1175 -1.9803 18 6 6.7992 -6.7002 -3.3155 19 1 6.1879 -6.5087 -4.1850 20 6 7.9323 -7.4777 -3.4271 21 7 8.6770 -7.7105 -2.3682 22 14 8.4099 -8.2005 -5.0820 23 1 7.4148 -7.7927 -6.1061 24 1 9.7530 -7.7010 -5.4712 25 1 8.4418 -9.6820 -4.9845 26 1 -0.3632 -0.0005 1.0276 27 1 -0.3632 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.9172 2.1324 0.0010 30 1 4.4167 1.3436 -0.0003 31 1 4.4165 -1.3438 0.0089 32 1 1.3098 -2.3009 2.1252 33 1 -0.1260 -2.5435 1.0753 34 1 0.3712 -4.8766 0.7410 35 1 0.9178 -4.6591 2.4359 36 1 2.5865 -5.5288 0.3874 37 1 3.1698 -4.6652 1.8377 38 1 2.6059 -4.5395 -1.6557 39 1 3.5684 -3.0535 -1.8392 40 1 4.7521 -5.2663 -2.9917 41 1 7.2135 -5.4695 -1.6224 42 1 6.2515 -6.9238 -1.2648 43 1 9.4744 -8.2572 -2.4468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057622989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:11 Heat of formation + Delta-G solvation = -0.570125 kcal Electronic energy + Delta-G solvation = -23260.734119 eV Core-core repulsion = 19919.846187 eV Total energy + Delta-G solvation = -3340.887932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.17948 -40.77232 -39.17225 -36.09650 -34.35126 -33.82045 -33.02141 -31.70448 -29.72122 -27.87851 -27.24068 -27.04642 -24.50031 -22.62121 -22.37399 -21.38469 -20.90965 -19.77082 -18.88182 -18.10137 -17.49091 -17.31540 -16.81382 -16.42668 -16.05217 -15.92493 -15.64827 -14.80685 -14.74205 -14.44036 -14.14653 -14.08545 -13.92847 -13.74144 -13.55237 -13.37483 -13.07462 -12.96696 -12.86880 -12.76464 -12.70588 -12.37190 -12.22199 -12.07945 -12.02678 -11.63957 -11.45718 -10.81522 -10.69976 -9.80816 -9.38165 -9.30560 -8.80374 -8.29352 -6.46118 1.40854 1.42608 1.44200 1.57632 1.80591 2.03074 2.19872 2.31426 2.51069 3.05419 3.06567 3.60575 3.70898 3.96169 3.97397 4.11679 4.15271 4.23167 4.27818 4.38416 4.42218 4.50904 4.58278 4.75379 4.75827 4.86076 4.89806 4.91033 5.00511 5.10064 5.11993 5.24286 5.31678 5.49389 5.51392 5.55249 5.69179 5.84985 5.94233 5.96247 6.21016 6.45299 6.65081 6.65384 6.95577 7.23564 7.53795 8.83225 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.003223 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.957793 B = 8685.393085 C = 9262.879231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.446 5.446 3 C -0.009 4.009 4 C -0.235 4.235 5 C -0.205 4.205 6 C 0.021 3.979 7 C 0.147 3.853 8 H 0.082 0.918 9 C -0.111 4.111 10 C -0.131 4.131 11 C 0.054 3.946 12 N -0.522 5.522 13 C 0.050 3.950 14 C 0.495 3.505 15 O -0.583 6.583 16 N -0.711 5.711 17 C 0.269 3.731 18 C -0.555 4.555 19 H 0.084 0.916 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.252 1.252 24 H -0.279 1.279 25 H -0.278 1.278 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.193 0.807 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.407 0.593 41 H -0.017 1.017 42 H -0.014 1.014 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.296 15.005 2.157 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.122 5.122 3 C -0.139 4.139 4 C -0.260 4.260 5 C -0.230 4.230 6 C -0.091 4.091 7 C 0.038 3.962 8 H 0.100 0.900 9 C -0.149 4.149 10 C -0.170 4.170 11 C -0.074 4.074 12 N -0.247 5.247 13 C -0.081 4.081 14 C 0.282 3.718 15 O -0.463 6.463 16 N -0.362 5.362 17 C 0.147 3.853 18 C -0.592 4.592 19 H 0.102 0.898 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.809 3.191 23 H -0.175 1.175 24 H -0.205 1.205 25 H -0.204 1.204 26 H 0.102 0.898 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.210 0.790 30 H 0.150 0.850 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.242 0.758 41 H 0.001 0.999 42 H 0.004 0.996 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.728 15.096 3.211 28.306 hybrid contribution 0.738 -0.961 -1.037 1.594 sum -22.991 14.135 2.174 27.076 Atomic orbital electron populations 1.22349 0.75127 1.05762 1.04415 1.43991 1.07288 1.04598 1.56327 1.22136 0.89774 0.92391 1.09634 1.21129 0.97397 0.94880 1.12604 1.20674 0.96151 0.95113 1.11083 1.20014 0.90172 0.88606 1.10350 1.20804 0.89376 0.86402 0.99571 0.90023 1.22750 1.00163 0.95669 0.96297 1.22805 0.94665 0.96215 1.03274 1.22665 0.96353 0.91374 0.97003 1.62658 1.34873 1.15421 1.11772 1.22079 0.93799 0.99641 0.92607 1.21271 0.87083 0.79602 0.83869 1.90644 1.64246 1.63153 1.28273 1.46182 1.27412 1.51007 1.11585 1.18491 0.81391 0.88841 0.96625 1.21653 1.10579 1.32292 0.94718 0.89783 1.26100 0.95768 0.96271 1.01618 1.70160 1.16180 1.38928 1.31778 0.85087 0.78360 0.77714 0.77903 1.17542 1.20513 1.20353 0.89751 0.87936 0.88903 0.79040 0.84997 0.87751 0.91809 0.87366 0.89265 0.89515 0.93913 0.92923 0.89184 0.86952 0.75752 0.99908 0.99562 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 9.99 127.77 1.28 1.78 16 2 N -0.45 -8.12 3.15 -533.24 -1.68 -9.80 16 3 C -0.01 -0.18 11.43 83.21 0.95 0.77 16 4 C -0.24 -6.24 10.86 22.14 0.24 -6.00 16 5 C -0.21 -6.41 10.18 22.14 0.23 -6.18 16 6 C 0.02 0.51 6.19 41.08 0.25 0.77 16 7 C 0.15 3.13 2.38 44.64 0.11 3.23 16 8 H 0.08 1.40 7.81 -2.39 -0.02 1.38 16 9 C -0.11 -1.80 5.90 31.98 0.19 -1.61 16 10 C -0.13 -2.32 6.94 31.78 0.22 -2.10 16 11 C 0.05 1.52 5.59 86.65 0.48 2.00 16 12 N -0.52 -15.33 3.79 -869.51 -3.30 -18.63 16 13 C 0.05 1.47 5.02 85.56 0.43 1.90 16 14 C 0.50 20.93 7.27 87.66 0.64 21.56 16 15 O -0.58 -30.53 15.53 -3.03 -0.05 -30.58 16 16 N -0.71 -31.28 5.55 -466.80 -2.59 -33.87 16 17 C 0.27 15.30 5.43 85.63 0.46 15.77 16 18 C -0.55 -30.85 9.28 25.60 0.24 -30.62 16 19 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 22 Si 0.99 43.00 29.54 68.60 2.03 45.03 16 23 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 26 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.09 0.52 7.50 -2.39 -0.02 0.50 16 29 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.10 3.96 7.82 -2.91 -0.02 3.94 16 32 H 0.06 1.26 8.05 -2.39 -0.02 1.24 16 33 H 0.11 0.98 7.46 -2.38 -0.02 0.97 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.29 7.24 -2.39 -0.02 1.27 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.09 2.07 8.07 -2.39 -0.02 2.05 16 39 H 0.11 3.08 8.12 -2.38 -0.02 3.06 16 40 H 0.41 14.72 8.32 -92.71 -0.77 13.95 16 41 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 42 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.24 353.48 1.10 -79.14 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.22 Total: 23.99 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 6.18 Total: 1.84 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -7.28 Total: -119.42 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.05 Total: -30.58 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -80.24 1.10 -79.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057622989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.573 kcal (2) G-P(sol) polarization free energy of solvation -80.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds