Wall clock time and date at job start Tue Mar 31 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36349 * 125.63374 * 2 1 4 4 C 1.34845 * 108.21727 * 180.02562 * 3 2 1 5 5 C 1.40890 * 107.42172 * 359.77038 * 4 3 2 6 6 C 1.34851 * 107.41448 * 0.37839 * 5 4 3 7 7 C 1.50697 * 125.89315 * 179.88111 * 6 5 4 8 8 H 1.09003 * 110.59269 * 117.69488 * 7 6 5 9 9 C 1.55092 * 110.83406 * 240.72182 * 7 6 5 10 10 C 1.54598 * 102.84998 * 155.84849 * 9 7 6 11 11 C 1.54000 * 105.22213 * 338.15300 * 10 9 7 12 12 N 1.47897 * 107.05672 * 358.72428 * 11 10 9 13 13 C 1.46906 * 110.99555 * 145.84575 * 12 11 10 14 14 C 1.50699 * 109.47317 * 69.87469 * 13 12 11 15 15 O 1.21285 * 119.99764 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00280 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00272 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47302 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99663 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99993 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00331 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47394 * 89.99932 * 22 20 18 24 24 H 1.48501 * 109.46738 * 210.00040 * 22 20 18 25 25 H 1.48506 * 109.46948 * 329.99579 * 22 20 18 26 26 H 1.09000 * 109.47116 * 269.97151 * 1 2 3 27 27 H 1.09001 * 109.47113 * 29.97813 * 1 2 3 28 28 H 1.09006 * 109.46904 * 149.97543 * 1 2 3 29 29 H 1.08001 * 125.89069 * 359.97438 * 3 2 1 30 30 H 1.08008 * 126.29215 * 180.02562 * 4 3 2 31 31 H 1.08002 * 126.29885 * 180.23389 * 5 4 3 32 32 H 1.09003 * 110.70966 * 37.53848 * 9 7 6 33 33 H 1.09003 * 110.81580 * 274.20940 * 9 7 6 34 34 H 1.09002 * 110.31193 * 219.18658 * 10 9 7 35 35 H 1.09000 * 110.30788 * 97.11602 * 10 9 7 36 36 H 1.09000 * 109.91521 * 118.07714 * 11 10 9 37 37 H 1.08997 * 109.91264 * 239.37252 * 11 10 9 38 38 H 1.09004 * 109.46885 * 189.86932 * 13 12 11 39 39 H 1.08991 * 109.47070 * 309.87158 * 13 12 11 40 40 H 0.97006 * 119.99759 * 359.97438 * 16 14 13 41 41 H 1.09004 * 109.46638 * 299.99432 * 17 16 14 42 42 H 1.08991 * 109.47379 * 59.99697 * 17 16 14 43 43 H 0.96994 * 120.00714 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7043 0.0044 6 6 2.2595 -1.1080 -0.0006 7 6 1.7820 -2.5374 -0.0004 8 1 1.2067 -2.7493 0.9008 9 6 0.9405 -2.8379 -1.2680 10 6 1.0832 -4.3698 -1.4202 11 6 2.3656 -4.7349 -0.6498 12 7 2.9289 -3.4732 -0.1224 13 6 3.5736 -3.6885 1.1800 14 6 4.8323 -4.4952 0.9903 15 8 5.1598 -4.8557 -0.1205 16 7 5.5935 -4.8168 2.0549 17 6 6.8174 -5.6005 1.8704 18 6 7.4780 -5.8225 3.2066 19 1 7.0311 -5.4197 4.1035 20 6 8.6529 -6.5398 3.2840 21 7 9.1969 -7.0308 2.1920 22 14 9.4721 -6.8144 4.9403 23 1 8.9569 -8.0687 5.5456 24 1 10.9415 -6.9218 4.7539 25 1 9.1694 -5.6707 5.8379 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.9171 2.1325 -0.0004 30 1 4.4165 1.3439 -0.0003 31 1 4.4166 -1.3436 0.0089 32 1 1.3537 -2.3240 -2.1359 33 1 -0.1027 -2.5610 -1.1151 34 1 1.1843 -4.6378 -2.4719 35 1 0.2222 -4.8752 -0.9828 36 1 2.1253 -5.4072 0.1738 37 1 3.0807 -5.2083 -1.3226 38 1 3.8230 -2.7254 1.6255 39 1 2.8922 -4.2277 1.8379 40 1 5.3313 -4.5288 2.9433 41 1 6.5684 -6.5634 1.4242 42 1 7.4988 -5.0607 1.2130 43 1 10.0233 -7.5357 2.2465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057622994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:16 Heat of formation + Delta-G solvation = 24.513187 kcal Electronic energy + Delta-G solvation = -23298.341150 eV Core-core repulsion = 19958.540912 eV Total energy + Delta-G solvation = -3339.800238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.32137 -39.30519 -37.81523 -34.08625 -33.10806 -32.32874 -31.95196 -30.75493 -27.86401 -26.90557 -26.41159 -25.73816 -22.56337 -21.61648 -21.30365 -20.09566 -19.50067 -18.99527 -17.33660 -16.93114 -16.16587 -15.53739 -15.32748 -15.19974 -14.83440 -14.70138 -14.13439 -13.92216 -13.55504 -13.28573 -13.08923 -12.92905 -12.64548 -12.36167 -12.18690 -12.06835 -11.89508 -11.83253 -11.77923 -11.30615 -11.20745 -11.05208 -10.93614 -10.83263 -10.62622 -10.27365 -9.35052 -8.98517 -8.68886 -8.51461 -8.29104 -7.90862 -7.79067 -6.12733 -4.19371 2.25576 2.83976 3.17284 3.26624 3.32714 3.35348 3.48137 3.75897 4.24693 4.39538 4.52474 4.55011 4.67106 4.85045 4.90633 4.93435 5.08639 5.13058 5.18087 5.23222 5.40300 5.42714 5.51080 5.64120 5.66525 5.72016 5.75622 5.85686 5.87998 6.05170 6.28280 6.41300 6.55502 6.86925 6.97922 7.17811 7.34284 7.38335 7.39882 7.52448 7.58198 7.72930 8.02001 8.70624 8.84538 9.20529 9.47512 10.97507 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.003352 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.857591 B = 8350.046701 C = 9139.523137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.450 5.450 3 C -0.023 4.023 4 C -0.201 4.201 5 C -0.168 4.168 6 C 0.023 3.977 7 C 0.136 3.864 8 H 0.057 0.943 9 C -0.116 4.116 10 C -0.131 4.131 11 C 0.043 3.957 12 N -0.479 5.479 13 C 0.024 3.976 14 C 0.501 3.499 15 O -0.538 6.538 16 N -0.716 5.716 17 C 0.252 3.748 18 C -0.542 4.542 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.141 0.859 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.389 0.611 41 H 0.025 0.975 42 H 0.027 0.973 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.180 13.021 -3.557 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.128 5.128 3 C -0.152 4.152 4 C -0.226 4.226 5 C -0.193 4.193 6 C -0.088 4.088 7 C 0.026 3.974 8 H 0.075 0.925 9 C -0.154 4.154 10 C -0.169 4.169 11 C -0.085 4.085 12 N -0.204 5.204 13 C -0.108 4.108 14 C 0.284 3.716 15 O -0.415 6.415 16 N -0.365 5.365 17 C 0.131 3.869 18 C -0.581 4.581 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.175 0.825 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.221 0.779 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.718 12.827 -4.774 24.831 hybrid contribution -0.174 -0.276 1.981 2.007 sum -20.892 12.552 -2.794 24.532 Atomic orbital electron populations 1.22075 0.78161 1.04229 1.02913 1.43729 1.05574 1.05639 1.57843 1.21684 0.90625 0.90882 1.11988 1.20961 0.95799 0.95449 1.10398 1.20818 0.95796 0.94490 1.08160 1.19848 0.90494 0.87325 1.11120 1.20972 0.91102 0.87884 0.97422 0.92516 1.22596 0.98470 0.96494 0.97867 1.22434 0.97572 0.95339 1.01526 1.22901 0.95573 0.90939 0.99064 1.64211 1.23824 1.09145 1.23195 1.22307 0.95802 1.01447 0.91219 1.20208 0.84940 0.80954 0.85477 1.90650 1.72292 1.54270 1.24293 1.46433 1.26593 1.55038 1.08485 1.19063 0.80046 0.90556 0.97196 1.21240 1.08422 1.35568 0.92832 0.91950 1.24949 0.96788 0.95239 0.97056 1.69971 1.19735 1.35138 1.27463 0.86428 0.78594 0.78600 0.83360 1.20526 1.21013 1.19737 0.91353 0.90148 0.89828 0.82512 0.84898 0.84085 0.90242 0.91306 0.90696 0.91607 0.93907 0.88512 0.87912 0.92442 0.77907 0.95701 0.95534 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 10.89 59.85 0.65 1.09 16 2 N -0.45 -4.77 3.15 -119.90 -0.38 -5.15 16 3 C -0.02 -0.25 11.43 -16.75 -0.19 -0.44 16 4 C -0.20 -2.60 10.86 -39.78 -0.43 -3.04 16 5 C -0.17 -2.48 9.23 -39.78 -0.37 -2.85 16 6 C 0.02 0.29 6.04 -81.79 -0.49 -0.20 16 7 C 0.14 1.60 2.47 -66.86 -0.16 1.44 16 8 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 9 C -0.12 -1.14 5.74 -24.79 -0.14 -1.29 16 10 C -0.13 -1.33 6.92 -25.37 -0.18 -1.51 16 11 C 0.04 0.59 5.76 -2.75 -0.02 0.58 16 12 N -0.48 -7.07 4.08 -225.32 -0.92 -7.99 16 13 C 0.02 0.36 4.75 -4.97 -0.02 0.34 16 14 C 0.50 10.20 7.63 -10.99 -0.08 10.11 16 15 O -0.54 -13.09 15.08 5.55 0.08 -13.00 16 16 N -0.72 -15.36 5.55 -61.47 -0.34 -15.70 16 17 C 0.25 6.79 5.43 -5.19 -0.03 6.76 16 18 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 22 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.47 5.29 -51.93 -0.27 0.20 16 29 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.14 2.35 7.20 -52.49 -0.38 1.98 16 32 H 0.08 0.88 8.05 -51.93 -0.42 0.47 16 33 H 0.07 0.50 6.39 -51.93 -0.33 0.17 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.58 7.57 -51.93 -0.39 0.18 16 37 H 0.10 1.60 7.39 -51.93 -0.38 1.21 16 38 H 0.10 1.48 6.73 -51.93 -0.35 1.13 16 39 H 0.06 0.76 7.81 -51.93 -0.41 0.35 16 40 H 0.39 7.18 8.32 -40.82 -0.34 6.84 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -33.73 347.54 -9.09 -42.83 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.61 Total: 5.95 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.88 Total: -2.54 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.90 Total: -54.51 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.73 -9.09 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057622994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.339 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds