Wall clock time and date at job start Tue Mar 31 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36349 * 125.63374 * 2 1 4 4 C 1.34845 * 108.21727 * 180.02562 * 3 2 1 5 5 C 1.40890 * 107.42172 * 359.77038 * 4 3 2 6 6 C 1.34851 * 107.41448 * 0.37839 * 5 4 3 7 7 C 1.50697 * 125.89315 * 179.88111 * 6 5 4 8 8 H 1.09003 * 110.59269 * 117.69488 * 7 6 5 9 9 C 1.55092 * 110.83406 * 240.72182 * 7 6 5 10 10 C 1.54598 * 102.84998 * 155.84849 * 9 7 6 11 11 C 1.54000 * 105.22213 * 338.15300 * 10 9 7 12 12 N 1.47897 * 107.05672 * 358.72428 * 11 10 9 13 13 C 1.46906 * 110.99555 * 145.84575 * 12 11 10 14 14 C 1.50699 * 109.47317 * 69.87469 * 13 12 11 15 15 O 1.21285 * 119.99764 * 359.97438 * 14 13 12 16 16 N 1.34768 * 120.00280 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00272 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47302 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99663 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99993 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00331 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47394 * 89.99932 * 22 20 18 24 24 H 1.48501 * 109.46738 * 210.00040 * 22 20 18 25 25 H 1.48506 * 109.46948 * 329.99579 * 22 20 18 26 26 H 1.09000 * 109.47116 * 269.97151 * 1 2 3 27 27 H 1.09001 * 109.47113 * 29.97813 * 1 2 3 28 28 H 1.09006 * 109.46904 * 149.97543 * 1 2 3 29 29 H 1.08001 * 125.89069 * 359.97438 * 3 2 1 30 30 H 1.08008 * 126.29215 * 180.02562 * 4 3 2 31 31 H 1.08002 * 126.29885 * 180.23389 * 5 4 3 32 32 H 1.09003 * 110.70966 * 37.53848 * 9 7 6 33 33 H 1.09003 * 110.81580 * 274.20940 * 9 7 6 34 34 H 1.09002 * 110.31193 * 219.18658 * 10 9 7 35 35 H 1.09000 * 110.30788 * 97.11602 * 10 9 7 36 36 H 1.09000 * 109.91521 * 118.07714 * 11 10 9 37 37 H 1.08997 * 109.91264 * 239.37252 * 11 10 9 38 38 H 1.09004 * 109.46885 * 189.86932 * 13 12 11 39 39 H 1.08991 * 109.47070 * 309.87158 * 13 12 11 40 40 H 0.97006 * 119.99759 * 359.97438 * 16 14 13 41 41 H 1.09004 * 109.46638 * 299.99432 * 17 16 14 42 42 H 1.08991 * 109.47379 * 59.99697 * 17 16 14 43 43 H 0.96994 * 120.00714 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7043 0.0044 6 6 2.2595 -1.1080 -0.0006 7 6 1.7820 -2.5374 -0.0004 8 1 1.2067 -2.7493 0.9008 9 6 0.9405 -2.8379 -1.2680 10 6 1.0832 -4.3698 -1.4202 11 6 2.3656 -4.7349 -0.6498 12 7 2.9289 -3.4732 -0.1224 13 6 3.5736 -3.6885 1.1800 14 6 4.8323 -4.4952 0.9903 15 8 5.1598 -4.8557 -0.1205 16 7 5.5935 -4.8168 2.0549 17 6 6.8174 -5.6005 1.8704 18 6 7.4780 -5.8225 3.2066 19 1 7.0311 -5.4197 4.1035 20 6 8.6529 -6.5398 3.2840 21 7 9.1969 -7.0308 2.1920 22 14 9.4721 -6.8144 4.9403 23 1 8.9569 -8.0687 5.5456 24 1 10.9415 -6.9218 4.7539 25 1 9.1694 -5.6707 5.8379 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.9171 2.1325 -0.0004 30 1 4.4165 1.3439 -0.0003 31 1 4.4166 -1.3436 0.0089 32 1 1.3537 -2.3240 -2.1359 33 1 -0.1027 -2.5610 -1.1151 34 1 1.1843 -4.6378 -2.4719 35 1 0.2222 -4.8752 -0.9828 36 1 2.1253 -5.4072 0.1738 37 1 3.0807 -5.2083 -1.3226 38 1 3.8230 -2.7254 1.6255 39 1 2.8922 -4.2277 1.8379 40 1 5.3313 -4.5288 2.9433 41 1 6.5684 -6.5634 1.4242 42 1 7.4988 -5.0607 1.2130 43 1 10.0233 -7.5357 2.2465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057622994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:16 Heat of formation + Delta-G solvation = 0.587293 kcal Electronic energy + Delta-G solvation = -23299.378654 eV Core-core repulsion = 19958.540912 eV Total energy + Delta-G solvation = -3340.837743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.21494 -40.73046 -39.16249 -36.09813 -34.36160 -33.93064 -33.03540 -31.69786 -29.73706 -27.84086 -27.32051 -27.02719 -24.50489 -22.71518 -22.25510 -21.36548 -20.90876 -19.88261 -18.91550 -18.14181 -17.42396 -17.33871 -16.72444 -16.39661 -16.05243 -15.94251 -15.68708 -15.02521 -14.72859 -14.59392 -14.13342 -14.05134 -13.95023 -13.70882 -13.46202 -13.42969 -13.00136 -12.97450 -12.91716 -12.73332 -12.70212 -12.38037 -12.22755 -12.10964 -12.00488 -11.50670 -11.47384 -10.80229 -10.71025 -9.81494 -9.42886 -9.37960 -8.82793 -8.29147 -6.46068 1.38304 1.42398 1.45330 1.56623 1.79907 2.02770 2.17156 2.30793 2.49935 3.05419 3.08539 3.61250 3.66560 3.95266 3.96780 4.08643 4.17870 4.21187 4.27244 4.36634 4.41120 4.48233 4.55327 4.71703 4.75570 4.83994 4.89116 4.97293 5.01029 5.10746 5.16037 5.24234 5.28080 5.48304 5.49106 5.51279 5.68641 5.84777 5.89868 5.90718 6.17878 6.41109 6.62580 6.65030 6.94741 7.23480 7.52994 8.83206 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.003352 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.857591 B = 8350.046701 C = 9139.523137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.445 5.445 3 C -0.008 4.008 4 C -0.233 4.233 5 C -0.208 4.208 6 C 0.021 3.979 7 C 0.139 3.861 8 H 0.079 0.921 9 C -0.107 4.107 10 C -0.121 4.121 11 C 0.040 3.960 12 N -0.508 5.508 13 C 0.043 3.957 14 C 0.497 3.503 15 O -0.583 6.583 16 N -0.711 5.711 17 C 0.270 3.730 18 C -0.556 4.556 19 H 0.084 0.916 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.986 3.014 23 H -0.269 1.269 24 H -0.284 1.284 25 H -0.256 1.256 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.193 0.807 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.407 0.593 41 H -0.013 1.013 42 H -0.017 1.017 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.600 14.527 -1.535 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.121 5.121 3 C -0.138 4.138 4 C -0.258 4.258 5 C -0.232 4.232 6 C -0.091 4.091 7 C 0.030 3.970 8 H 0.096 0.904 9 C -0.145 4.145 10 C -0.159 4.159 11 C -0.088 4.088 12 N -0.233 5.233 13 C -0.088 4.088 14 C 0.284 3.716 15 O -0.463 6.463 16 N -0.362 5.362 17 C 0.147 3.853 18 C -0.594 4.594 19 H 0.102 0.898 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.809 3.191 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.179 1.179 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.210 0.790 30 H 0.151 0.849 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.242 0.758 41 H 0.005 0.995 42 H 0.001 0.999 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.204 14.367 -2.732 28.279 hybrid contribution 0.872 -0.706 1.254 1.683 sum -23.332 13.661 -1.478 27.077 Atomic orbital electron populations 1.22435 0.75164 1.06008 1.04505 1.43987 1.07298 1.04599 1.56233 1.22157 0.89772 0.92387 1.09489 1.21123 0.97406 0.94819 1.12416 1.20691 0.95964 0.95292 1.11302 1.19893 0.90218 0.88458 1.10523 1.21059 0.90121 0.86450 0.99353 0.90386 1.22595 1.00087 0.95741 0.96087 1.22402 0.96324 0.95974 1.01221 1.22838 0.96405 0.90651 0.98891 1.64063 1.25975 1.10215 1.23023 1.22116 0.93349 1.00918 0.92458 1.21223 0.86019 0.80169 0.84237 1.90630 1.73627 1.55930 1.26125 1.46180 1.25266 1.54724 1.10003 1.18489 0.81429 0.88807 0.96564 1.21624 1.08838 1.35710 0.93233 0.89843 1.26091 0.97462 0.94558 1.01570 1.70140 1.20374 1.36000 1.30492 0.85140 0.76988 0.79207 0.77778 1.19445 1.20941 1.17928 0.89782 0.87833 0.88733 0.78977 0.84876 0.87598 0.91866 0.87430 0.90610 0.88765 0.93613 0.92604 0.86918 0.89334 0.75803 0.99535 0.99856 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.89 127.77 1.39 1.87 16 2 N -0.45 -8.07 3.15 -533.24 -1.68 -9.75 16 3 C -0.01 -0.15 11.43 83.21 0.95 0.80 16 4 C -0.23 -6.06 10.86 22.14 0.24 -5.82 16 5 C -0.21 -6.33 9.23 22.14 0.20 -6.12 16 6 C 0.02 0.52 6.04 41.08 0.25 0.77 16 7 C 0.14 2.99 2.47 44.57 0.11 3.10 16 8 H 0.08 1.39 8.02 -2.39 -0.02 1.37 16 9 C -0.11 -1.79 5.74 31.85 0.18 -1.61 16 10 C -0.12 -2.22 6.92 31.48 0.22 -2.00 16 11 C 0.04 1.11 5.76 86.45 0.50 1.60 16 12 N -0.51 -15.04 4.08 -866.78 -3.54 -18.58 16 13 C 0.04 1.30 4.75 85.56 0.41 1.71 16 14 C 0.50 21.24 7.63 87.66 0.67 21.91 16 15 O -0.58 -30.55 15.08 -3.05 -0.05 -30.59 16 16 N -0.71 -31.67 5.55 -466.80 -2.59 -34.26 16 17 C 0.27 15.41 5.43 85.64 0.46 15.88 16 18 C -0.56 -31.13 9.28 25.60 0.24 -30.90 16 19 H 0.08 4.22 7.60 -2.91 -0.02 4.19 16 20 C 0.00 0.15 5.46 84.66 0.46 0.61 16 21 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 22 Si 0.99 43.17 29.54 68.60 2.03 45.19 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.09 0.57 5.29 -2.38 -0.01 0.56 16 29 H 0.19 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.11 3.88 7.20 -2.91 -0.02 3.86 16 32 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 33 H 0.11 1.00 6.39 -2.39 -0.02 0.98 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.21 7.57 -2.39 -0.02 1.19 16 37 H 0.06 1.98 7.39 -2.39 -0.02 1.96 16 38 H 0.11 3.24 6.73 -2.39 -0.02 3.22 16 39 H 0.09 2.16 7.81 -2.39 -0.02 2.14 16 40 H 0.41 15.02 8.32 -92.70 -0.77 14.25 16 41 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 42 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -79.76 347.54 0.98 -78.78 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.24 Total: 24.65 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 6.28 Total: 1.79 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -7.52 Total: -119.82 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -79.76 0.98 -78.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057622994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.367 kcal (2) G-P(sol) polarization free energy of solvation -79.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds