Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00056 * 2 1 4 4 C 1.46904 * 111.00033 * 123.95254 * 2 1 3 5 5 C 1.53007 * 109.46903 * 66.04884 * 4 2 1 6 6 C 1.53003 * 109.46866 * 179.97438 * 5 4 2 7 7 N 1.46502 * 109.47078 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00045 * 270.00510 * 7 6 5 9 9 C 1.50702 * 109.47269 * 275.89530 * 8 7 6 10 10 H 1.08004 * 119.99418 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00407 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00109 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99929 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47062 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46666 * 120.00410 * 13 11 9 16 16 H 1.48494 * 109.47138 * 240.00036 * 13 11 9 17 17 C 1.34776 * 119.99989 * 89.99676 * 7 6 5 18 18 O 1.21516 * 119.99725 * 4.81064 * 17 7 6 19 19 C 1.48148 * 120.00109 * 184.80149 * 17 7 6 20 20 C 1.39816 * 120.92280 * 132.49334 * 19 17 7 21 21 C 1.38139 * 119.00319 * 179.97438 * 20 19 17 22 22 N 1.31820 * 120.89797 * 359.97438 * 21 20 19 23 23 C 1.31808 * 122.04383 * 0.02562 * 22 21 20 24 24 C 1.38144 * 120.90153 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47126 * 296.04121 * 1 2 3 26 26 H 1.08990 * 109.47039 * 56.04853 * 1 2 3 27 27 H 1.09005 * 109.46723 * 176.04849 * 1 2 3 28 28 H 1.08994 * 109.47278 * 183.95076 * 3 2 1 29 29 H 1.08997 * 109.47182 * 303.95333 * 3 2 1 30 30 H 1.09002 * 109.46801 * 63.95211 * 3 2 1 31 31 H 1.08993 * 109.47506 * 306.04679 * 4 2 1 32 32 H 1.09001 * 109.47213 * 186.04659 * 4 2 1 33 33 H 1.09002 * 109.47329 * 59.99816 * 5 4 2 34 34 H 1.09001 * 109.47002 * 299.99904 * 5 4 2 35 35 H 1.09002 * 109.47107 * 59.99912 * 6 5 4 36 36 H 1.09001 * 109.47422 * 299.99880 * 6 5 4 37 37 H 1.09003 * 109.47485 * 35.89329 * 8 7 6 38 38 H 1.08998 * 109.47507 * 155.89491 * 8 7 6 39 39 H 0.96996 * 120.00398 * 179.97438 * 12 11 9 40 40 H 1.08001 * 120.49467 * 359.70097 * 20 19 17 41 41 H 1.08002 * 119.55647 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.55036 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.50178 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2427 0.9703 6 6 2.1804 -3.0405 2.1549 7 7 1.8314 -4.4544 1.9950 8 6 0.5749 -4.9657 2.5480 9 6 0.7685 -5.3074 4.0030 10 1 1.7313 -5.1580 4.4692 11 6 -0.2834 -5.8095 4.7392 12 7 -1.4559 -5.9909 4.1717 13 14 -0.0430 -6.2336 6.5426 14 1 1.3580 -5.9401 6.9376 15 1 -0.9707 -5.4212 7.3700 16 1 -0.3256 -7.6760 6.7538 17 6 2.6662 -5.2846 1.3391 18 8 3.7470 -4.8818 0.9567 19 6 2.2662 -6.6881 1.0844 20 6 2.4153 -7.2590 -0.1832 21 6 2.0299 -8.5714 -0.3762 22 7 1.5286 -9.2823 0.6142 23 6 1.3712 -8.7829 1.8238 24 6 1.7302 -7.4790 2.1052 25 1 -0.3633 0.4512 0.9234 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0827 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8723 0.9233 31 1 1.5612 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1757 33 1 2.0658 -2.6214 0.0451 34 1 0.5472 -2.3476 0.9323 35 1 1.7464 -2.6619 3.0803 36 1 3.2647 -2.9356 2.1925 37 1 -0.2000 -4.2050 2.4536 38 1 0.2747 -5.8599 2.0018 39 1 -2.1959 -6.3445 4.6895 40 1 2.8216 -6.6811 -1.0001 41 1 2.1407 -9.0212 -1.3519 42 1 0.9559 -9.4016 2.6056 43 1 1.5981 -7.0763 3.0986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064381266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = 4.902410 kcal Electronic energy + Delta-G solvation = -23516.525366 eV Core-core repulsion = 20175.874741 eV Total energy + Delta-G solvation = -3340.650625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10702 -38.59092 -37.56483 -35.35605 -33.22346 -32.31327 -31.21964 -30.64911 -27.66126 -27.51404 -26.28625 -24.03532 -23.12536 -22.91462 -22.13508 -20.68764 -19.09256 -17.04362 -16.62660 -16.23513 -15.65797 -15.50023 -15.33676 -14.91826 -14.88772 -14.67169 -14.25580 -13.97090 -13.69701 -13.26651 -13.18576 -12.75005 -12.47101 -12.41754 -12.15550 -11.85419 -11.70576 -11.57682 -11.32144 -11.20318 -11.05318 -11.00190 -10.84807 -10.38703 -10.18384 -9.87680 -9.65762 -9.29947 -8.87487 -8.75461 -8.54690 -8.37381 -7.86847 -6.32694 -4.41755 1.39973 1.62180 3.12703 3.22818 3.25432 3.31555 3.67764 4.02875 4.20127 4.32755 4.85008 4.98523 5.02576 5.07609 5.12570 5.27290 5.31623 5.36533 5.50689 5.52968 5.61853 5.64417 5.65904 5.74981 5.76069 5.85454 5.97030 6.07533 6.11353 6.26644 6.38853 6.45501 6.54480 6.65907 6.75980 7.00725 7.03297 7.08431 7.17055 7.39911 7.61139 7.89418 8.16628 8.35844 8.62918 8.81873 9.25830 10.72872 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011028 B = 0.005526 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.350898 B = 5066.101442 C = 6874.081984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.122 3.878 7 N -0.584 5.584 8 C 0.229 3.771 9 C -0.545 4.545 10 H 0.065 0.935 11 C 0.070 3.930 12 N -0.881 5.881 13 Si 0.893 3.107 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.557 3.443 18 O -0.562 6.562 19 C -0.078 4.078 20 C -0.133 4.133 21 C 0.077 3.923 22 N -0.481 5.481 23 C 0.087 3.913 24 C -0.119 4.119 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.267 0.733 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.039 6.013 -5.800 8.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.313 5.313 8 C 0.109 3.891 9 C -0.584 4.584 10 H 0.083 0.917 11 C -0.135 4.135 12 N -0.517 5.517 13 Si 0.720 3.280 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.205 1.205 17 C 0.345 3.655 18 O -0.442 6.442 19 C -0.089 4.089 20 C -0.154 4.154 21 C -0.080 4.080 22 N -0.191 5.191 23 C -0.070 4.070 24 C -0.138 4.138 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.285 5.103 -6.525 8.911 hybrid contribution -0.274 1.094 1.951 2.253 sum 3.011 6.197 -4.575 8.270 Atomic orbital electron populations 1.22442 0.87380 1.02773 1.00135 1.61972 1.08126 1.13442 1.43704 1.22365 1.00728 0.89034 1.00206 1.22068 1.00088 0.93789 0.90967 1.21943 1.01638 0.93383 0.99819 1.21244 1.00687 0.80568 0.97716 1.48105 1.22526 1.08095 1.52560 1.19678 0.79665 0.95856 0.93870 1.21476 0.97572 1.44341 0.94962 0.91681 1.24957 0.94820 0.95019 0.98675 1.69932 1.01482 1.43546 1.36779 0.86508 0.78613 0.78420 0.84475 1.19475 1.20731 1.20497 1.18263 0.84100 0.85034 0.78101 1.90691 1.22376 1.77268 1.53908 1.20318 0.98938 0.94852 0.94819 1.22084 0.99808 0.96636 0.96828 1.22519 0.96531 0.90937 0.98033 1.67463 1.12103 1.38673 1.00814 1.22716 0.97008 0.93582 0.93678 1.23423 0.92978 0.94301 1.03126 0.95626 0.91740 0.90765 0.91434 0.91612 0.95825 0.94605 0.90714 0.91162 0.91614 0.90142 0.90718 0.94696 0.93595 0.92282 0.84910 0.83006 0.82664 0.80448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.06 0.56 0.81 16 2 N -0.55 -6.99 5.02 -251.26 -1.26 -8.25 16 3 C 0.03 0.26 9.57 60.06 0.57 0.83 16 4 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 5 C -0.13 -2.02 5.46 -26.73 -0.15 -2.17 16 6 C 0.12 2.16 5.46 -4.04 -0.02 2.13 16 7 N -0.58 -11.93 2.46 -176.06 -0.43 -12.37 16 8 C 0.23 5.16 4.67 -5.19 -0.02 5.14 16 9 C -0.55 -13.07 6.89 -34.44 -0.24 -13.30 16 10 H 0.07 1.60 7.81 -52.48 -0.41 1.19 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.88 -22.73 13.29 55.43 0.74 -22.00 16 13 Si 0.89 19.21 29.54 -169.99 -5.02 14.19 16 14 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 C 0.56 11.73 7.31 -12.19 -0.09 11.64 16 18 O -0.56 -12.72 16.59 5.35 0.09 -12.63 16 19 C -0.08 -1.54 4.99 -104.65 -0.52 -2.06 16 20 C -0.13 -2.27 9.84 -39.03 -0.38 -2.65 16 21 C 0.08 1.22 11.17 -17.59 -0.20 1.02 16 22 N -0.48 -8.48 10.34 -13.31 -0.14 -8.62 16 23 C 0.09 1.56 11.17 -17.60 -0.20 1.37 16 24 C -0.12 -2.34 7.63 -39.02 -0.30 -2.63 16 25 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.07 0.93 6.47 -51.93 -0.34 0.60 16 28 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.47 8.12 -51.93 -0.42 0.04 16 32 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.06 6.55 -51.93 -0.34 0.72 16 35 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 36 H 0.07 1.33 7.36 -51.93 -0.38 0.95 16 37 H 0.03 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.05 1.09 5.38 -51.93 -0.28 0.82 16 39 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 40 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.16 2.49 8.06 -52.48 -0.42 2.06 16 43 H 0.18 3.81 4.81 -52.49 -0.25 3.55 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -27.87 354.47 -8.40 -36.27 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.62 Total: 5.55 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.10 Total: 2.51 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -1.09 Total: -51.24 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.87 -8.40 -36.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064381266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.176 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds