Wall clock time and date at job start Tue Mar 31 2020 07:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 111.00347 * 2 1 4 4 C 1.46901 * 110.99661 * 123.95626 * 2 1 3 5 5 C 1.52998 * 109.47376 * 169.99979 * 4 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47010 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00416 * 270.00192 * 7 6 5 9 9 C 1.50696 * 109.46952 * 275.83228 * 8 7 6 10 10 H 1.08008 * 120.00415 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99824 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99907 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00017 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47265 * 89.99817 * 13 11 9 15 15 H 1.48493 * 109.47033 * 209.99923 * 13 11 9 16 16 H 1.48506 * 109.47274 * 330.00080 * 13 11 9 17 17 C 1.34783 * 119.99904 * 90.00541 * 7 6 5 18 18 O 1.21556 * 119.99769 * 4.93579 * 17 7 6 19 19 C 1.47839 * 120.00327 * 184.93271 * 17 7 6 20 20 C 1.40027 * 120.55728 * 132.06702 * 19 17 7 21 21 C 1.38353 * 118.28523 * 179.97438 * 20 19 17 22 22 C 1.38352 * 119.30424 * 0.27378 * 21 20 19 23 23 N 1.31926 * 121.07899 * 359.44603 * 22 21 20 24 24 C 1.31691 * 121.88231 * 0.55054 * 23 22 21 25 25 H 1.08998 * 109.47012 * 296.05386 * 1 2 3 26 26 H 1.09002 * 109.46514 * 56.04506 * 1 2 3 27 27 H 1.08994 * 109.47034 * 176.04755 * 1 2 3 28 28 H 1.09000 * 109.47090 * 183.95489 * 3 2 1 29 29 H 1.09003 * 109.47060 * 303.94732 * 3 2 1 30 30 H 1.08998 * 109.47305 * 63.94832 * 3 2 1 31 31 H 1.08996 * 109.47901 * 49.99265 * 4 2 1 32 32 H 1.09004 * 109.47038 * 289.99668 * 4 2 1 33 33 H 1.09000 * 109.47444 * 59.99543 * 5 4 2 34 34 H 1.09004 * 109.46783 * 299.99845 * 5 4 2 35 35 H 1.09002 * 109.46823 * 60.00213 * 6 5 4 36 36 H 1.08987 * 109.47328 * 300.00123 * 6 5 4 37 37 H 1.08994 * 109.46825 * 35.83450 * 8 7 6 38 38 H 1.08998 * 109.46733 * 155.83272 * 8 7 6 39 39 H 0.96997 * 119.99879 * 179.97438 * 12 11 9 40 40 H 1.07993 * 120.85520 * 359.95446 * 20 19 17 41 41 H 1.08004 * 120.34694 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.46336 * 179.72578 * 22 21 20 43 43 H 1.07997 * 119.72241 * 179.72247 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9555 0.9705 6 6 4.0527 -1.7528 2.1556 7 7 5.4975 -1.9346 1.9952 8 6 6.0138 -3.1063 1.2832 9 6 6.1002 -4.2733 2.2328 10 1 5.8010 -4.1540 3.2637 11 6 6.5624 -5.4930 1.7858 12 7 6.9273 -5.6381 0.5307 13 14 6.6703 -6.9394 2.9630 14 1 5.3918 -7.6944 2.9380 15 1 7.7812 -7.8332 2.5485 16 1 6.9235 -6.4403 4.3386 17 6 6.3518 -1.0240 2.5026 18 8 5.9293 -0.1000 3.1700 19 6 7.8027 -1.1489 2.2477 20 6 8.5473 -0.0444 1.8160 21 6 9.9020 -0.2140 1.5922 22 6 10.4712 -1.4587 1.7946 23 7 9.7456 -2.4804 2.2070 24 6 8.4531 -2.3691 2.4339 25 1 -0.3633 0.4514 0.9232 26 1 -0.3632 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0829 1.3431 -0.0709 29 1 1.5900 1.9162 -0.8525 30 1 1.7045 1.8723 0.9232 31 1 1.5089 -1.7407 1.1757 32 1 1.7975 -0.2248 2.0628 33 1 3.9910 0.0191 0.9324 34 1 3.7023 -1.4967 0.0452 35 1 3.5662 -2.7275 2.1939 36 1 3.8548 -1.2113 3.0805 37 1 5.3437 -3.3560 0.4607 38 1 7.0055 -2.8842 0.8893 39 1 7.2528 -6.4961 0.2164 40 1 8.0761 0.9149 1.6613 41 1 10.5081 0.6155 1.2591 42 1 11.5276 -1.5951 1.6164 43 1 7.8919 -3.2297 2.7666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064381267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:41 Heat of formation + Delta-G solvation = 5.192851 kcal Electronic energy + Delta-G solvation = -23531.576415 eV Core-core repulsion = 20190.938384 eV Total energy + Delta-G solvation = -3340.638031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10520 -38.52911 -37.54229 -35.31370 -33.08742 -32.13312 -31.74397 -30.49483 -27.63768 -27.50118 -26.16043 -23.93155 -23.07501 -22.95175 -22.13459 -20.66735 -18.92862 -16.90912 -16.67395 -16.41332 -16.04160 -15.53274 -15.47297 -14.91569 -14.80917 -14.57225 -14.06315 -13.85469 -13.62637 -13.16655 -12.84271 -12.69723 -12.44528 -12.33909 -12.19660 -11.88283 -11.79991 -11.58074 -11.39759 -11.22283 -11.18105 -10.91962 -10.76664 -10.28184 -10.15141 -9.81950 -9.55870 -9.43193 -8.86874 -8.69901 -8.44966 -8.36680 -7.81787 -6.25018 -4.34688 1.30920 1.70136 3.22183 3.29407 3.31207 3.34926 3.71872 4.04678 4.27389 4.35398 4.88282 5.04342 5.08298 5.12244 5.17105 5.26029 5.30461 5.34805 5.36518 5.51163 5.54829 5.61725 5.67028 5.75173 5.77696 5.83927 5.90173 5.97875 6.14368 6.25717 6.38181 6.45229 6.57500 6.64887 6.71024 7.01780 7.04246 7.13801 7.19847 7.44740 7.68417 7.95757 8.21646 8.45615 8.69076 8.87316 9.33637 10.80675 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.005533 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.938495 B = 5058.913226 C = 6968.113161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.122 3.878 7 N -0.585 5.585 8 C 0.230 3.770 9 C -0.552 4.552 10 H 0.065 0.935 11 C 0.074 3.926 12 N -0.877 5.877 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.562 3.438 18 O -0.568 6.568 19 C -0.178 4.178 20 C -0.036 4.036 21 C -0.196 4.196 22 C 0.106 3.894 23 N -0.488 5.488 24 C 0.151 3.849 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.043 0.957 39 H 0.268 0.732 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 9.966 -1.096 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.313 5.313 8 C 0.110 3.890 9 C -0.590 4.590 10 H 0.083 0.917 11 C -0.132 4.132 12 N -0.514 5.514 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.208 1.208 16 H -0.195 1.195 17 C 0.350 3.650 18 O -0.449 6.449 19 C -0.183 4.183 20 C -0.063 4.063 21 C -0.216 4.216 22 C -0.051 4.051 23 N -0.196 5.196 24 C -0.005 4.005 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.168 0.832 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.445 9.236 -1.218 9.932 hybrid contribution -0.554 0.336 0.944 1.145 sum -4.000 9.571 -0.274 10.377 Atomic orbital electron populations 1.22369 0.87615 1.02208 1.00136 1.61966 1.07525 1.13937 1.43743 1.22425 1.01437 0.88733 1.00019 1.22074 0.95922 0.98091 0.90827 1.21945 0.93802 1.00980 1.00064 1.21233 0.80830 1.00533 0.97608 1.48123 1.05335 1.23668 1.54201 1.19659 0.95839 0.81082 0.92388 1.21430 1.45622 0.94910 0.97008 0.91662 1.24952 0.94337 0.98678 0.95235 1.69913 1.41420 1.25398 1.14639 0.86515 0.77877 0.82052 0.81260 1.20461 1.20845 1.19497 1.18104 0.85630 0.81890 0.79384 1.90681 1.78977 1.34545 1.40697 1.21007 0.95367 0.96170 1.05733 1.21491 0.93576 0.97740 0.93464 1.21927 0.95436 0.99325 1.04936 1.22937 1.00032 0.88733 0.93396 1.67879 1.07576 1.31950 1.12219 1.24456 0.89768 0.96858 0.89459 0.95893 0.91624 0.91315 0.90917 0.91755 0.95772 0.90504 0.94794 0.92042 0.90756 0.89907 0.90945 0.94439 0.93932 0.92228 0.85028 0.85033 0.83211 0.78539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.07 0.57 0.83 16 2 N -0.55 -7.03 5.02 -251.26 -1.26 -8.29 16 3 C 0.02 0.26 9.32 60.06 0.56 0.82 16 4 C 0.06 0.79 4.96 -3.82 -0.02 0.78 16 5 C -0.13 -2.04 5.46 -26.73 -0.15 -2.19 16 6 C 0.12 2.18 5.46 -4.04 -0.02 2.16 16 7 N -0.58 -12.13 2.46 -176.19 -0.43 -12.57 16 8 C 0.23 5.33 4.67 -5.19 -0.02 5.31 16 9 C -0.55 -13.67 6.87 -34.44 -0.24 -13.90 16 10 H 0.07 1.63 7.81 -52.48 -0.41 1.22 16 11 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 12 N -0.88 -23.58 13.29 55.43 0.74 -22.84 16 13 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 C 0.56 11.95 7.27 -12.33 -0.09 11.86 16 18 O -0.57 -12.86 16.58 5.32 0.09 -12.77 16 19 C -0.18 -3.56 4.97 -104.82 -0.52 -4.08 16 20 C -0.04 -0.61 9.88 -38.87 -0.38 -0.99 16 21 C -0.20 -2.84 10.10 -39.50 -0.40 -3.24 16 22 C 0.11 1.68 11.17 -17.47 -0.20 1.49 16 23 N -0.49 -9.75 10.35 -12.91 -0.13 -9.88 16 24 C 0.15 3.21 8.70 -17.13 -0.15 3.06 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 29 H 0.06 0.65 8.12 -51.93 -0.42 0.22 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.98 8.06 -51.93 -0.42 0.57 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.06 1.02 6.55 -51.93 -0.34 0.68 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 36 H 0.07 1.31 7.36 -51.94 -0.38 0.92 16 37 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 38 H 0.04 1.05 5.39 -51.93 -0.28 0.77 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 40 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 41 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 42 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 43 H 0.20 4.61 4.74 -52.49 -0.25 4.36 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -28.91 354.38 -8.45 -37.35 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.62 Total: 4.90 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -1.15 Total: 3.68 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -1.09 Total: -53.58 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.91 -8.45 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064381267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.544 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds