Wall clock time and date at job start Tue Mar 31 2020 07:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46894 * 111.00347 * 2 1 4 4 C 1.46901 * 110.99661 * 123.95626 * 2 1 3 5 5 C 1.52998 * 109.47376 * 169.99979 * 4 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.47010 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00416 * 270.00192 * 7 6 5 9 9 C 1.50696 * 109.46952 * 275.83228 * 8 7 6 10 10 H 1.08008 * 120.00415 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99824 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99907 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00017 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47265 * 89.99817 * 13 11 9 15 15 H 1.48493 * 109.47033 * 209.99923 * 13 11 9 16 16 H 1.48506 * 109.47274 * 330.00080 * 13 11 9 17 17 C 1.34783 * 119.99904 * 90.00541 * 7 6 5 18 18 O 1.21556 * 119.99769 * 4.93579 * 17 7 6 19 19 C 1.47839 * 120.00327 * 184.93271 * 17 7 6 20 20 C 1.40027 * 120.55728 * 132.06702 * 19 17 7 21 21 C 1.38353 * 118.28523 * 179.97438 * 20 19 17 22 22 C 1.38352 * 119.30424 * 0.27378 * 21 20 19 23 23 N 1.31926 * 121.07899 * 359.44603 * 22 21 20 24 24 C 1.31691 * 121.88231 * 0.55054 * 23 22 21 25 25 H 1.08998 * 109.47012 * 296.05386 * 1 2 3 26 26 H 1.09002 * 109.46514 * 56.04506 * 1 2 3 27 27 H 1.08994 * 109.47034 * 176.04755 * 1 2 3 28 28 H 1.09000 * 109.47090 * 183.95489 * 3 2 1 29 29 H 1.09003 * 109.47060 * 303.94732 * 3 2 1 30 30 H 1.08998 * 109.47305 * 63.94832 * 3 2 1 31 31 H 1.08996 * 109.47901 * 49.99265 * 4 2 1 32 32 H 1.09004 * 109.47038 * 289.99668 * 4 2 1 33 33 H 1.09000 * 109.47444 * 59.99543 * 5 4 2 34 34 H 1.09004 * 109.46783 * 299.99845 * 5 4 2 35 35 H 1.09002 * 109.46823 * 60.00213 * 6 5 4 36 36 H 1.08987 * 109.47328 * 300.00123 * 6 5 4 37 37 H 1.08994 * 109.46825 * 35.83450 * 8 7 6 38 38 H 1.08998 * 109.46733 * 155.83272 * 8 7 6 39 39 H 0.96997 * 119.99879 * 179.97438 * 12 11 9 40 40 H 1.07993 * 120.85520 * 359.95446 * 20 19 17 41 41 H 1.08004 * 120.34694 * 180.02562 * 21 20 19 42 42 H 1.08004 * 119.46336 * 179.72578 * 22 21 20 43 43 H 1.07997 * 119.72241 * 179.72247 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9555 0.9705 6 6 4.0527 -1.7528 2.1556 7 7 5.4975 -1.9346 1.9952 8 6 6.0138 -3.1063 1.2832 9 6 6.1002 -4.2733 2.2328 10 1 5.8010 -4.1540 3.2637 11 6 6.5624 -5.4930 1.7858 12 7 6.9273 -5.6381 0.5307 13 14 6.6703 -6.9394 2.9630 14 1 5.3918 -7.6944 2.9380 15 1 7.7812 -7.8332 2.5485 16 1 6.9235 -6.4403 4.3386 17 6 6.3518 -1.0240 2.5026 18 8 5.9293 -0.1000 3.1700 19 6 7.8027 -1.1489 2.2477 20 6 8.5473 -0.0444 1.8160 21 6 9.9020 -0.2140 1.5922 22 6 10.4712 -1.4587 1.7946 23 7 9.7456 -2.4804 2.2070 24 6 8.4531 -2.3691 2.4339 25 1 -0.3633 0.4514 0.9232 26 1 -0.3632 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0829 1.3431 -0.0709 29 1 1.5900 1.9162 -0.8525 30 1 1.7045 1.8723 0.9232 31 1 1.5089 -1.7407 1.1757 32 1 1.7975 -0.2248 2.0628 33 1 3.9910 0.0191 0.9324 34 1 3.7023 -1.4967 0.0452 35 1 3.5662 -2.7275 2.1939 36 1 3.8548 -1.2113 3.0805 37 1 5.3437 -3.3560 0.4607 38 1 7.0055 -2.8842 0.8893 39 1 7.2528 -6.4961 0.2164 40 1 8.0761 0.9149 1.6613 41 1 10.5081 0.6155 1.2591 42 1 11.5276 -1.5951 1.6164 43 1 7.8919 -3.2297 2.7666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064381267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:40 Heat of formation + Delta-G solvation = -13.098818 kcal Electronic energy + Delta-G solvation = -23532.369601 eV Core-core repulsion = 20190.938384 eV Total energy + Delta-G solvation = -3341.431217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62296 -40.02552 -38.63294 -36.99779 -34.85549 -33.62550 -33.16787 -31.85342 -29.34527 -28.50398 -27.48540 -25.38448 -24.77944 -24.38268 -23.42791 -21.81212 -20.50848 -18.70473 -18.32241 -17.93274 -17.50520 -16.91901 -16.58364 -16.39955 -16.10318 -16.07760 -15.33664 -15.22141 -14.91750 -14.63259 -14.45486 -14.17506 -14.04846 -13.53527 -13.40963 -13.25922 -13.03624 -12.92324 -12.77646 -12.65117 -12.56585 -12.43770 -12.36687 -11.99512 -11.72118 -11.55290 -11.13585 -10.84481 -10.65918 -10.28847 -9.93992 -9.54867 -9.32962 -8.22424 -6.37002 -0.09433 0.34626 1.41981 1.45178 1.53545 1.70634 2.16401 2.42109 2.91951 3.02580 3.07260 3.48758 3.81265 3.94974 3.96232 4.04000 4.09176 4.19713 4.21731 4.38801 4.42644 4.48773 4.57472 4.61044 4.65943 4.73179 4.79343 4.86211 4.92628 4.98241 5.01039 5.08254 5.12235 5.16716 5.25065 5.27562 5.62160 5.76233 5.78065 6.00703 6.03813 6.10868 6.45827 6.75208 7.04754 7.16560 7.35039 8.83007 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.005533 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.938495 B = 5058.913226 C = 6968.113161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.565 5.565 3 C 0.023 3.977 4 C 0.066 3.934 5 C -0.113 4.113 6 C 0.120 3.880 7 N -0.587 5.587 8 C 0.250 3.750 9 C -0.549 4.549 10 H 0.058 0.942 11 C 0.033 3.967 12 N -0.909 5.909 13 Si 0.952 3.048 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.560 3.440 18 O -0.586 6.586 19 C -0.201 4.201 20 C -0.040 4.040 21 C -0.171 4.171 22 C 0.104 3.896 23 N -0.518 5.518 24 C 0.130 3.870 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.269 0.731 40 H 0.150 0.850 41 H 0.184 0.816 42 H 0.192 0.808 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 11.272 -1.288 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.289 5.289 3 C -0.125 4.125 4 C -0.062 4.062 5 C -0.152 4.152 6 C -0.003 4.003 7 N -0.315 5.315 8 C 0.129 3.871 9 C -0.587 4.587 10 H 0.076 0.924 11 C -0.169 4.169 12 N -0.547 5.547 13 Si 0.777 3.223 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.194 1.194 17 C 0.349 3.651 18 O -0.469 6.469 19 C -0.206 4.206 20 C -0.066 4.066 21 C -0.191 4.191 22 C -0.052 4.052 23 N -0.227 5.227 24 C -0.026 4.026 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.168 0.832 41 H 0.201 0.799 42 H 0.209 0.791 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.953 10.546 -1.404 11.041 hybrid contribution -0.629 0.029 0.980 1.165 sum -3.582 10.575 -0.424 11.173 Atomic orbital electron populations 1.22427 0.85852 1.02882 1.01113 1.61951 1.09216 1.14472 1.43271 1.22430 1.00644 0.88456 1.00994 1.21955 0.93967 0.98818 0.91485 1.21751 0.95659 0.99660 0.98151 1.21372 0.79468 1.00915 0.98578 1.48132 1.06549 1.22998 1.53853 1.19246 0.94648 0.81514 0.91668 1.21527 1.44954 0.95512 0.96739 0.92416 1.25585 0.94085 1.00844 0.96412 1.70002 1.42648 1.25943 1.16070 0.85646 0.77973 0.79310 0.79391 1.19674 1.20786 1.19449 1.18376 0.86409 0.81465 0.78876 1.90649 1.79540 1.35204 1.41527 1.20984 0.94715 0.97138 1.07788 1.21841 0.94676 0.97388 0.92696 1.22435 0.94551 1.00159 1.01919 1.23685 1.01535 0.88376 0.91620 1.67806 1.07185 1.34197 1.13479 1.23887 0.90631 0.96460 0.91663 0.95214 0.90214 0.90933 0.92330 0.90002 0.95419 0.89870 0.94377 0.92897 0.92269 0.89908 0.90979 0.96195 0.95353 0.92219 0.83190 0.79920 0.79117 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.57 127.69 1.22 1.69 16 2 N -0.56 -13.88 5.02 -948.86 -4.76 -18.64 16 3 C 0.02 0.51 9.32 127.69 1.19 1.70 16 4 C 0.07 1.75 4.96 86.30 0.43 2.18 16 5 C -0.11 -3.65 5.46 30.59 0.17 -3.48 16 6 C 0.12 4.41 5.46 86.38 0.47 4.88 16 7 N -0.59 -25.27 2.46 -829.60 -2.04 -27.31 16 8 C 0.25 12.10 4.67 85.63 0.40 12.50 16 9 C -0.55 -28.15 6.87 25.60 0.18 -27.97 16 10 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 11 C 0.03 1.73 5.46 84.66 0.46 2.19 16 12 N -0.91 -50.01 13.29 21.45 0.28 -49.72 16 13 Si 0.95 41.82 29.54 68.60 2.03 43.85 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 C 0.56 24.39 7.27 86.78 0.63 25.03 16 18 O -0.59 -26.90 16.58 -3.89 -0.06 -26.96 16 19 C -0.20 -8.14 4.97 -19.99 -0.10 -8.24 16 20 C -0.04 -1.26 9.88 22.73 0.22 -1.03 16 21 C -0.17 -4.32 10.10 22.32 0.23 -4.09 16 22 C 0.10 3.03 11.17 84.71 0.95 3.98 16 23 N -0.52 -20.52 10.35 -194.75 -2.01 -22.53 16 24 C 0.13 5.66 8.70 85.02 0.74 6.40 16 25 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 27 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 28 H 0.06 1.45 6.47 -2.39 -0.02 1.43 16 29 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 2.08 8.06 -2.39 -0.02 2.06 16 32 H 0.04 0.98 8.12 -2.38 -0.02 0.96 16 33 H 0.05 1.79 6.55 -2.39 -0.02 1.77 16 34 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.08 3.01 8.07 -2.39 -0.02 2.99 16 36 H 0.07 2.65 7.36 -2.39 -0.02 2.64 16 37 H 0.02 1.03 8.11 -2.39 -0.02 1.01 16 38 H 0.03 1.47 5.39 -2.39 -0.01 1.46 16 39 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 42 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.17 8.17 4.74 -2.91 -0.01 8.15 16 Total: -1.00 -64.12 354.38 1.60 -62.51 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.99 Total: 23.10 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 7.18 Total: 15.70 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -8.53 Total: -118.20 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.06 Total: -26.96 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -64.12 1.60 -62.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064381267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.415 kcal (2) G-P(sol) polarization free energy of solvation -64.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds