Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47158 * 2 1 4 4 C 1.46510 * 119.99627 * 269.99571 * 3 2 1 5 5 C 1.50700 * 109.46852 * 270.00244 * 4 3 2 6 6 H 1.08002 * 120.00395 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99848 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00361 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47335 * 89.99690 * 9 7 5 11 11 H 1.48503 * 109.47314 * 209.99693 * 9 7 5 12 12 H 1.48506 * 109.47161 * 329.99970 * 9 7 5 13 13 C 1.34772 * 120.00537 * 89.99982 * 3 2 1 14 14 O 1.21595 * 120.00180 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99945 * 359.97438 * 13 3 2 16 16 C 1.40192 * 120.00300 * 184.59473 * 15 13 3 17 17 C 1.38837 * 119.99610 * 324.90794 * 16 15 13 18 18 C 1.38072 * 120.00947 * 180.02562 * 17 16 15 19 19 C 1.38879 * 119.99282 * 359.97438 * 18 17 16 20 20 N 1.39923 * 120.00322 * 180.02562 * 19 18 17 21 21 C 1.46498 * 119.99916 * 359.97438 * 20 19 18 22 22 C 1.46503 * 119.99769 * 179.97438 * 20 19 18 23 23 C 1.38876 * 119.98975 * 0.26889 * 19 18 17 24 24 C 1.38078 * 119.99305 * 359.47570 * 23 19 18 25 25 H 1.09002 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47220 * 300.00201 * 1 2 3 27 27 H 1.09002 * 109.47116 * 60.00285 * 1 2 3 28 28 H 1.09000 * 109.47519 * 239.99091 * 2 1 3 29 29 H 1.09007 * 109.47081 * 119.99233 * 2 1 3 30 30 H 1.08991 * 109.46658 * 29.99948 * 4 3 2 31 31 H 1.08998 * 109.46837 * 150.00441 * 4 3 2 32 32 H 0.96995 * 119.99809 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99895 * 4.59750 * 15 13 3 34 34 H 1.08005 * 119.99468 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.00263 * 179.97438 * 18 17 16 36 36 H 1.08995 * 109.46860 * 90.00947 * 21 20 19 37 37 H 1.09001 * 109.46817 * 210.00504 * 21 20 19 38 38 H 1.08996 * 109.47472 * 330.00567 * 21 20 19 39 39 H 1.09006 * 109.47048 * 89.99359 * 22 20 19 40 40 H 1.08996 * 109.46973 * 209.99611 * 22 20 19 41 41 H 1.08998 * 109.46861 * 330.00081 * 22 20 19 42 42 H 1.08000 * 120.00161 * 179.70317 * 23 19 18 43 43 H 1.08003 * 119.99064 * 180.23045 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2689 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3901 -2.8775 8 7 3.3495 3.1262 -3.6177 9 14 5.9139 2.0971 -3.4163 10 1 5.9778 0.8763 -4.2594 11 1 6.3929 3.2648 -4.1989 12 1 6.7738 1.9173 -2.2190 13 6 2.2429 2.0166 1.1671 14 8 2.6487 3.1628 1.1670 15 7 2.0178 1.3815 2.3344 16 6 2.1587 2.0717 3.5465 17 6 3.1408 3.0437 3.6817 18 6 3.2801 3.7232 4.8755 19 6 2.4374 3.4347 5.9410 20 7 2.5780 4.1236 7.1507 21 6 3.6147 5.1489 7.2936 22 6 1.6886 3.8196 8.2745 23 6 1.4583 2.4589 5.8072 24 6 1.3160 1.7833 4.6114 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.5818 1.6875 -2.0284 31 1 2.0956 3.1409 -1.1386 32 1 3.6757 3.5166 -4.4436 33 1 1.7584 0.4469 2.3358 34 1 3.7959 3.2683 2.8529 35 1 4.0444 4.4790 4.9807 36 1 3.2107 6.1175 6.9993 37 1 3.9420 5.1922 8.3324 38 1 4.4625 4.8997 6.6556 39 1 2.1290 3.0297 8.8830 40 1 1.5528 4.7139 8.8826 41 1 0.7223 3.4888 7.8938 42 1 0.8060 2.2310 6.6372 43 1 0.5522 1.0270 4.5062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078439424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = 21.040952 kcal Electronic energy + Delta-G solvation = -23120.074542 eV Core-core repulsion = 19780.123737 eV Total energy + Delta-G solvation = -3339.950805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15707 -38.91814 -36.46550 -35.17504 -33.71061 -32.58057 -30.98458 -30.08777 -28.91235 -28.21090 -26.81479 -24.50914 -23.02987 -22.71903 -22.31072 -20.65961 -19.13004 -17.89781 -17.17431 -16.46320 -16.35151 -15.60530 -15.13564 -15.03608 -14.53361 -14.26002 -14.09153 -13.63898 -13.55512 -13.31669 -13.21825 -12.79595 -12.51180 -12.33867 -12.30260 -12.05083 -12.01342 -11.96660 -11.69427 -11.16658 -10.91417 -10.84889 -10.75578 -10.49162 -10.18230 -10.07476 -9.60488 -9.14559 -8.81105 -8.61563 -8.39402 -7.64992 -6.83868 -6.00019 -4.04521 1.65591 1.81432 3.11483 3.32655 3.37288 3.39618 3.45918 3.85983 4.24954 4.43709 4.58232 4.87780 4.90322 5.08565 5.17887 5.23067 5.30692 5.33757 5.44826 5.50924 5.55215 5.61560 5.66727 5.69500 5.76718 5.80763 6.00392 6.22535 6.24842 6.30583 6.42951 6.49641 6.67979 6.89167 6.98733 7.26298 7.31019 7.43215 7.58874 7.63286 7.77495 7.99348 8.28434 8.70631 8.96987 9.36489 9.61273 11.07712 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.003655 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.658037 B = 7659.879119 C = 8702.689483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.609 5.609 4 C 0.261 3.739 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.699 3.301 14 O -0.572 6.572 15 N -0.696 5.696 16 C 0.124 3.876 17 C -0.071 4.071 18 C -0.175 4.175 19 C 0.186 3.814 20 N -0.645 5.645 21 C 0.096 3.904 22 C 0.098 3.902 23 C -0.180 4.180 24 C -0.109 4.109 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.398 0.602 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -3.820 20.695 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.016 4.016 3 N -0.344 5.344 4 C 0.142 3.858 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.401 3.599 14 O -0.449 6.449 15 N -0.346 5.346 16 C 0.027 3.973 17 C -0.092 4.092 18 C -0.198 4.198 19 C 0.086 3.914 20 N -0.360 5.360 21 C -0.047 4.047 22 C -0.045 4.045 23 C -0.203 4.203 24 C -0.130 4.130 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.234 0.766 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.723 -2.781 20.541 21.260 hybrid contribution 0.768 -0.624 -0.390 1.064 sum -3.955 -3.405 20.151 20.816 Atomic orbital electron populations 1.22243 0.96778 1.01340 1.02540 1.21341 0.93522 0.84454 1.02300 1.47595 1.67275 1.13238 1.06299 1.19199 0.96089 0.93511 0.77027 1.21477 0.97049 1.31721 1.06142 0.92497 1.24927 0.97792 0.94963 0.96439 1.69936 1.35665 1.33534 1.14334 0.86507 0.84804 0.77605 0.78553 1.20720 1.21128 1.19921 1.15939 0.79129 0.84734 0.80115 1.90870 1.51524 1.16894 1.85563 1.42886 1.74222 1.13863 1.03629 1.17386 0.96604 0.97725 0.85539 1.21253 0.96288 0.94756 0.96926 1.20601 1.02197 1.04339 0.92673 1.17785 0.95246 0.92549 0.85795 1.46223 1.37035 1.41772 1.10921 1.21566 0.91024 0.90585 1.01539 1.21537 0.94019 1.00345 0.88643 1.20318 1.01349 1.00204 0.98412 1.20578 0.98148 1.01422 0.92860 0.92206 0.93044 0.91886 0.89661 0.92500 0.94917 0.93776 0.92769 0.76571 0.83788 0.86067 0.93697 0.92030 0.91281 0.93875 0.92029 0.91490 0.86196 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.11 1.74 5.93 -4.05 -0.02 1.72 16 3 N -0.61 -13.12 2.46 -180.80 -0.44 -13.56 16 4 C 0.26 6.89 5.16 -5.19 -0.03 6.86 16 5 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.70 15.31 8.12 -86.92 -0.71 14.61 16 14 O -0.57 -14.92 13.36 5.28 0.07 -14.85 16 15 N -0.70 -11.87 5.22 -14.18 -0.07 -11.94 16 16 C 0.12 2.06 6.30 -83.59 -0.53 1.53 16 17 C -0.07 -1.26 8.69 -39.42 -0.34 -1.61 16 18 C -0.18 -2.64 9.20 -39.40 -0.36 -3.00 16 19 C 0.19 2.50 6.56 -83.69 -0.55 1.95 16 20 N -0.64 -7.02 3.42 -187.49 -0.64 -7.66 16 21 C 0.10 0.85 10.19 59.85 0.61 1.46 16 22 C 0.10 0.78 10.18 59.85 0.61 1.38 16 23 C -0.18 -2.27 9.20 -39.40 -0.36 -2.63 16 24 C -0.11 -1.47 9.96 -39.42 -0.39 -1.86 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 29 H 0.06 0.75 6.30 -51.93 -0.33 0.43 16 30 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.40 5.48 6.52 -40.82 -0.27 5.22 16 34 H 0.14 2.97 6.22 -52.48 -0.33 2.64 16 35 H 0.12 1.63 6.14 -52.49 -0.32 1.31 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.07 0.62 6.20 -51.93 -0.32 0.30 16 39 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.07 0.51 6.21 -51.93 -0.32 0.19 16 42 H 0.12 1.21 6.14 -52.49 -0.32 0.89 16 43 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -34.21 351.50 -8.54 -42.75 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.35 Total: 4.16 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.11 Total: 4.82 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.42 Total: -59.22 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.07 Total: -14.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.21 -8.54 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078439424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.795 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds