Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47158 * 2 1 4 4 C 1.46510 * 119.99627 * 269.99571 * 3 2 1 5 5 C 1.50700 * 109.46852 * 270.00244 * 4 3 2 6 6 H 1.08002 * 120.00395 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99848 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00361 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47335 * 89.99690 * 9 7 5 11 11 H 1.48503 * 109.47314 * 209.99693 * 9 7 5 12 12 H 1.48506 * 109.47161 * 329.99970 * 9 7 5 13 13 C 1.34772 * 120.00537 * 89.99982 * 3 2 1 14 14 O 1.21595 * 120.00180 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99945 * 359.97438 * 13 3 2 16 16 C 1.40192 * 120.00300 * 184.59473 * 15 13 3 17 17 C 1.38837 * 119.99610 * 324.90794 * 16 15 13 18 18 C 1.38072 * 120.00947 * 180.02562 * 17 16 15 19 19 C 1.38879 * 119.99282 * 359.97438 * 18 17 16 20 20 N 1.39923 * 120.00322 * 180.02562 * 19 18 17 21 21 C 1.46498 * 119.99916 * 359.97438 * 20 19 18 22 22 C 1.46503 * 119.99769 * 179.97438 * 20 19 18 23 23 C 1.38876 * 119.98975 * 0.26889 * 19 18 17 24 24 C 1.38078 * 119.99305 * 359.47570 * 23 19 18 25 25 H 1.09002 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47220 * 300.00201 * 1 2 3 27 27 H 1.09002 * 109.47116 * 60.00285 * 1 2 3 28 28 H 1.09000 * 109.47519 * 239.99091 * 2 1 3 29 29 H 1.09007 * 109.47081 * 119.99233 * 2 1 3 30 30 H 1.08991 * 109.46658 * 29.99948 * 4 3 2 31 31 H 1.08998 * 109.46837 * 150.00441 * 4 3 2 32 32 H 0.96995 * 119.99809 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99895 * 4.59750 * 15 13 3 34 34 H 1.08005 * 119.99468 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.00263 * 179.97438 * 18 17 16 36 36 H 1.08995 * 109.46860 * 90.00947 * 21 20 19 37 37 H 1.09001 * 109.46817 * 210.00504 * 21 20 19 38 38 H 1.08996 * 109.47472 * 330.00567 * 21 20 19 39 39 H 1.09006 * 109.47048 * 89.99359 * 22 20 19 40 40 H 1.08996 * 109.46973 * 209.99611 * 22 20 19 41 41 H 1.08998 * 109.46861 * 330.00081 * 22 20 19 42 42 H 1.08000 * 120.00161 * 179.70317 * 23 19 18 43 43 H 1.08003 * 119.99064 * 180.23045 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2689 5 6 3.6858 1.8348 -1.7038 6 1 4.3429 1.2307 -1.0957 7 6 4.1495 2.3901 -2.8775 8 7 3.3495 3.1262 -3.6177 9 14 5.9139 2.0971 -3.4163 10 1 5.9778 0.8763 -4.2594 11 1 6.3929 3.2648 -4.1989 12 1 6.7738 1.9173 -2.2190 13 6 2.2429 2.0166 1.1671 14 8 2.6487 3.1628 1.1670 15 7 2.0178 1.3815 2.3344 16 6 2.1587 2.0717 3.5465 17 6 3.1408 3.0437 3.6817 18 6 3.2801 3.7232 4.8755 19 6 2.4374 3.4347 5.9410 20 7 2.5780 4.1236 7.1507 21 6 3.6147 5.1489 7.2936 22 6 1.6886 3.8196 8.2745 23 6 1.4583 2.4589 5.8072 24 6 1.3160 1.7833 4.6114 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.5818 1.6875 -2.0284 31 1 2.0956 3.1409 -1.1386 32 1 3.6757 3.5166 -4.4436 33 1 1.7584 0.4469 2.3358 34 1 3.7959 3.2683 2.8529 35 1 4.0444 4.4790 4.9807 36 1 3.2107 6.1175 6.9993 37 1 3.9420 5.1922 8.3324 38 1 4.4625 4.8997 6.6556 39 1 2.1290 3.0297 8.8830 40 1 1.5528 4.7139 8.8826 41 1 0.7223 3.4888 7.8938 42 1 0.8060 2.2310 6.6372 43 1 0.5522 1.0270 4.5062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078439424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = -0.638512 kcal Electronic energy + Delta-G solvation = -23121.014634 eV Core-core repulsion = 19780.123737 eV Total energy + Delta-G solvation = -3340.890897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60420 -40.15211 -37.64329 -36.78596 -35.26646 -34.49241 -32.06169 -31.60632 -30.19638 -28.94883 -28.62720 -25.72477 -24.71615 -24.13563 -23.47733 -21.81611 -20.64958 -19.31130 -18.62224 -18.33822 -17.71527 -16.79750 -16.68016 -16.24733 -15.86689 -15.68780 -15.37355 -15.16633 -14.65762 -14.63447 -14.48815 -14.19885 -13.66123 -13.51730 -13.47950 -13.28957 -13.22486 -13.07349 -12.83374 -12.81393 -12.69811 -12.49943 -12.19408 -11.97380 -11.91698 -11.71925 -11.38022 -10.84595 -10.62529 -10.00073 -9.80622 -9.40224 -8.21451 -7.88306 -6.35212 0.53848 0.63105 1.36260 1.39610 1.49883 1.84139 2.25492 2.32656 2.41266 3.02609 3.07122 3.12533 3.96592 4.07978 4.08361 4.27527 4.38311 4.43121 4.49035 4.52789 4.56987 4.65107 4.69716 4.84881 4.87460 4.92004 4.95581 4.97593 5.03136 5.11899 5.22245 5.24675 5.34969 5.38087 5.55204 5.59666 5.70593 5.85719 6.06143 6.09062 6.19491 6.43466 6.60884 6.73932 7.15775 7.32160 7.73369 8.86198 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.003655 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.658037 B = 7659.879119 C = 8702.689483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.615 5.615 4 C 0.280 3.720 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.276 1.276 13 C 0.692 3.308 14 O -0.626 6.626 15 N -0.673 5.673 16 C 0.090 3.910 17 C -0.097 4.097 18 C -0.190 4.190 19 C 0.191 3.809 20 N -0.647 5.647 21 C 0.089 3.911 22 C 0.090 3.910 23 C -0.176 4.176 24 C -0.091 4.091 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.027 0.973 31 H -0.004 1.004 32 H 0.267 0.733 33 H 0.415 0.585 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.155 0.845 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 -5.699 23.455 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.350 5.350 4 C 0.158 3.842 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.201 1.201 13 C 0.394 3.606 14 O -0.506 6.506 15 N -0.325 5.325 16 C -0.006 4.006 17 C -0.118 4.118 18 C -0.213 4.213 19 C 0.088 3.912 20 N -0.360 5.360 21 C -0.054 4.054 22 C -0.052 4.052 23 C -0.199 4.199 24 C -0.112 4.112 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.255 0.745 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.173 0.827 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.494 -4.716 23.377 24.472 hybrid contribution 0.963 0.021 -1.064 1.435 sum -4.531 -4.695 22.313 23.247 Atomic orbital electron populations 1.22158 0.94434 1.03589 1.01670 1.21690 0.95413 0.81399 1.03665 1.47471 1.67617 1.15172 1.04717 1.18611 0.95206 0.91250 0.79117 1.21728 0.97972 1.31929 1.06433 0.93109 1.25842 1.02360 0.94467 0.96426 1.70054 1.37755 1.34217 1.14788 0.85417 0.79020 0.78243 0.78106 1.18660 1.20591 1.20053 1.16156 0.78868 0.84281 0.81262 1.90835 1.53768 1.19474 1.86525 1.42496 1.73263 1.14386 1.02325 1.17611 0.98085 0.98834 0.86085 1.21027 0.97135 0.96818 0.96854 1.20612 1.03340 1.04693 0.92651 1.17946 0.94496 0.92490 0.86224 1.46543 1.37550 1.41278 1.10629 1.21714 0.90460 0.90118 1.03061 1.21782 0.93717 1.01804 0.87862 1.20728 1.01046 0.99081 0.98996 1.20878 0.97386 1.01310 0.91666 0.88264 0.92589 0.94096 0.90325 0.89087 0.95528 0.98621 0.92409 0.74526 0.88128 0.85690 0.93569 0.89393 0.92074 0.92623 0.90147 0.90824 0.82718 0.82891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 10.24 71.98 0.74 -3.34 16 2 C 0.10 3.16 5.93 86.38 0.51 3.68 16 3 N -0.62 -27.49 2.46 -844.19 -2.07 -29.56 16 4 C 0.28 15.65 5.16 85.63 0.44 16.09 16 5 C -0.54 -32.20 9.39 25.60 0.24 -31.96 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 9 Si 0.97 46.06 29.54 68.60 2.03 48.09 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.69 31.75 8.12 179.06 1.45 33.20 16 14 O -0.63 -35.19 13.36 -4.02 -0.05 -35.24 16 15 N -0.67 -23.01 5.22 -317.02 -1.66 -24.67 16 16 C 0.09 2.97 6.30 38.09 0.24 3.21 16 17 C -0.10 -3.65 8.69 22.37 0.19 -3.46 16 18 C -0.19 -5.87 9.20 22.38 0.21 -5.66 16 19 C 0.19 4.80 6.56 38.16 0.25 5.05 16 20 N -0.65 -12.38 3.42 -747.10 -2.55 -14.93 16 21 C 0.09 1.42 10.19 127.77 1.30 2.72 16 22 C 0.09 1.07 10.18 127.77 1.30 2.37 16 23 C -0.18 -3.87 9.20 22.38 0.21 -3.67 16 24 C -0.09 -2.23 9.96 22.37 0.22 -2.01 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 29 H 0.09 2.22 6.30 -2.38 -0.02 2.20 16 30 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 31 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.42 10.73 6.52 -92.71 -0.60 10.12 16 34 H 0.10 4.62 6.22 -2.91 -0.02 4.60 16 35 H 0.13 3.56 6.14 -2.91 -0.02 3.55 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.93 8.07 -2.39 -0.02 0.92 16 38 H 0.06 1.07 6.20 -2.39 -0.01 1.05 16 39 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.08 0.68 8.07 -2.39 -0.02 0.67 16 41 H 0.07 0.79 6.21 -2.39 -0.01 0.77 16 42 H 0.16 2.34 6.14 -2.91 -0.02 2.32 16 43 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -80.16 351.50 4.16 -76.00 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.41 Total: 20.17 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 7.77 Total: 17.16 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -6.00 Total: -126.17 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.05 Total: -35.24 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -80.16 4.16 -76.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078439424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.365 kcal (2) G-P(sol) polarization free energy of solvation -80.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds