Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47327 * 2 1 4 4 C 1.46492 * 119.99734 * 269.99872 * 3 2 1 5 5 C 1.50702 * 109.47331 * 270.00122 * 4 3 2 6 6 H 1.08000 * 119.99886 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00418 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99745 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00363 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46831 * 59.99786 * 9 7 5 11 11 H 1.48491 * 109.47446 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00444 * 9 7 5 13 13 C 1.34773 * 120.00120 * 89.99703 * 3 2 1 14 14 O 1.21601 * 119.99972 * 180.02562 * 13 3 2 15 15 N 1.34780 * 120.00244 * 0.02562 * 13 3 2 16 16 C 1.40204 * 119.99876 * 185.62717 * 15 13 3 17 17 C 1.38649 * 120.09848 * 24.76731 * 16 15 13 18 18 C 1.38241 * 120.00487 * 180.29811 * 17 16 15 19 19 C 1.38278 * 120.19645 * 359.67505 * 18 17 16 20 20 C 1.38234 * 120.18823 * 0.02562 * 19 18 17 21 21 C 1.38704 * 119.99370 * 0.02562 * 20 19 18 22 22 N 1.39930 * 120.09716 * 179.97438 * 21 20 19 23 23 C 1.46900 * 110.99361 * 60.00292 * 22 21 20 24 24 C 1.46899 * 111.00150 * 296.04824 * 22 21 20 25 25 H 1.09003 * 109.47139 * 300.00532 * 1 2 3 26 26 H 1.08995 * 109.46580 * 59.99876 * 1 2 3 27 27 H 1.09001 * 109.47368 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47213 * 239.99516 * 2 1 3 29 29 H 1.09007 * 109.46588 * 119.99746 * 2 1 3 30 30 H 1.09004 * 109.47529 * 30.00116 * 4 3 2 31 31 H 1.09008 * 109.47609 * 150.00091 * 4 3 2 32 32 H 0.96996 * 119.99828 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99577 * 5.62302 * 15 13 3 34 34 H 1.08002 * 119.99765 * 359.97199 * 17 16 15 35 35 H 1.07997 * 119.90539 * 179.70468 * 18 17 16 36 36 H 1.07995 * 119.91019 * 180.02562 * 19 18 17 37 37 H 1.07995 * 120.00099 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47693 * 60.00274 * 23 22 21 39 39 H 1.08999 * 109.47253 * 299.99441 * 23 22 21 40 40 H 1.09006 * 109.46876 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46990 * 179.97438 * 24 22 21 42 42 H 1.08995 * 109.46689 * 300.00116 * 24 22 21 43 43 H 1.09002 * 109.46824 * 59.99563 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2307 -1.0958 7 6 4.1496 2.3902 -2.8775 8 7 3.3499 3.1271 -3.6171 9 14 5.9140 2.0972 -3.4164 10 1 6.1417 0.6405 -3.5942 11 1 6.1618 2.7980 -4.7018 12 1 6.8412 2.6203 -2.3811 13 6 2.2430 2.0166 1.1672 14 8 2.6479 3.1632 1.1671 15 7 2.0188 1.3811 2.3344 16 6 2.1385 2.0770 3.5457 17 6 1.9750 3.4535 3.5758 18 6 2.0996 4.1385 4.7701 19 6 2.3806 3.4541 5.9384 20 6 2.5390 2.0810 5.9186 21 6 2.4168 1.3860 4.7245 22 7 2.5773 -0.0039 4.7020 23 6 1.5903 -0.6618 5.5685 24 6 3.9454 -0.3820 5.0806 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5818 1.6876 -2.0284 31 1 2.0957 3.1410 -1.1385 32 1 3.6762 3.5181 -4.4427 33 1 1.7746 0.4424 2.3364 34 1 1.7555 3.9913 2.6653 35 1 1.9766 5.2112 4.7909 36 1 2.4765 3.9938 6.8689 37 1 2.7588 1.5496 6.8327 38 1 0.5851 -0.4205 5.2228 39 1 1.7160 -0.3121 6.5932 40 1 1.7372 -1.7413 5.5320 41 1 4.0425 -1.4674 5.0552 42 1 4.6522 0.0629 4.3802 43 1 4.1563 -0.0221 6.0876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080167667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = 19.942776 kcal Electronic energy + Delta-G solvation = -23871.224600 eV Core-core repulsion = 20531.226174 eV Total energy + Delta-G solvation = -3339.998426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47893 -38.98000 -36.48068 -35.35999 -34.27531 -32.65982 -30.15403 -29.86228 -29.24376 -27.70133 -26.77866 -24.53614 -23.36636 -23.01786 -21.81924 -20.92913 -19.12574 -17.91315 -16.91686 -16.46657 -16.36689 -15.43427 -15.12510 -15.01086 -14.57505 -14.46287 -14.01044 -13.92441 -13.51118 -13.47096 -12.94627 -12.81621 -12.52750 -12.31042 -12.10664 -12.03215 -11.81231 -11.72481 -11.65953 -11.21529 -11.15046 -10.92144 -10.73865 -10.49690 -10.14456 -10.05613 -9.60321 -9.17142 -8.67748 -8.55136 -8.39826 -7.85112 -7.46522 -6.00970 -4.05315 1.42989 1.60264 3.27391 3.34498 3.38765 3.43265 3.70499 3.80067 4.15759 4.42069 4.55115 4.95965 5.04443 5.16940 5.20027 5.30183 5.32329 5.33103 5.36457 5.46122 5.62191 5.66604 5.69896 5.72114 5.78950 5.83039 6.01860 6.09473 6.23102 6.35678 6.46074 6.49851 6.70760 6.75696 6.86363 6.88734 7.09370 7.40202 7.50455 7.56500 7.75726 7.97763 8.26882 8.65229 8.95370 9.29118 9.60026 11.06845 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.004423 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.850396 B = 6329.721356 C = 6597.022465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.605 5.605 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.697 3.303 14 O -0.570 6.570 15 N -0.681 5.681 16 C 0.213 3.787 17 C -0.132 4.132 18 C -0.098 4.098 19 C -0.147 4.147 20 C -0.127 4.127 21 C 0.033 3.967 22 N -0.507 5.507 23 C 0.028 3.972 24 C 0.031 3.969 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.409 0.591 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -7.583 18.152 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.399 3.601 14 O -0.447 6.447 15 N -0.328 5.328 16 C 0.114 3.886 17 C -0.153 4.153 18 C -0.116 4.116 19 C -0.167 4.167 20 C -0.147 4.147 21 C -0.064 4.064 22 N -0.228 5.228 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.247 0.753 34 H 0.172 0.828 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.302 -6.873 17.303 19.358 hybrid contribution 1.108 -0.462 0.494 1.299 sum -4.193 -7.335 17.798 19.701 Atomic orbital electron populations 1.22232 0.96684 1.01429 1.02450 1.21375 0.93581 0.84313 1.02502 1.47619 1.66775 1.13359 1.06229 1.19218 0.96166 0.93483 0.76972 1.21429 0.97011 1.31873 1.06180 0.92574 1.24910 0.97765 0.94936 0.96384 1.69921 1.35697 1.33420 1.14422 0.86571 0.84935 0.78202 0.77775 1.20299 1.21199 1.20239 1.15973 0.79029 0.84915 0.80179 1.90849 1.51486 1.16804 1.85558 1.42950 1.72134 1.14452 1.03239 1.17479 0.95908 0.91218 0.84007 1.21578 1.01125 0.92826 0.99765 1.21081 0.98746 0.99803 0.92006 1.20865 1.03815 0.93838 0.98188 1.21208 1.01609 0.94921 0.96988 1.18368 1.06930 0.88741 0.92399 1.59477 1.04693 1.05042 1.53561 1.22459 0.95979 0.99031 0.94471 1.22423 0.88769 1.01102 0.99299 0.93097 0.91883 0.92132 0.89611 0.92237 0.94794 0.93738 0.92702 0.75347 0.82843 0.85959 0.86568 0.86651 0.91274 0.95225 0.91123 0.91125 0.91031 0.95245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.74 5.94 -4.04 -0.02 1.72 16 3 N -0.61 -12.99 2.46 -180.80 -0.44 -13.43 16 4 C 0.26 6.82 5.16 -5.20 -0.03 6.80 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.70 15.16 8.09 -86.92 -0.70 14.46 16 14 O -0.57 -14.59 13.09 5.28 0.07 -14.52 16 15 N -0.68 -11.86 5.16 -14.07 -0.07 -11.93 16 16 C 0.21 3.55 6.45 -83.42 -0.54 3.02 16 17 C -0.13 -2.25 8.72 -39.43 -0.34 -2.59 16 18 C -0.10 -1.36 10.04 -39.57 -0.40 -1.76 16 19 C -0.15 -1.80 10.04 -39.57 -0.40 -2.20 16 20 C -0.13 -1.56 8.57 -39.41 -0.34 -1.90 16 21 C 0.03 0.45 4.75 -83.54 -0.40 0.06 16 22 N -0.51 -6.04 4.32 -186.67 -0.81 -6.84 16 23 C 0.03 0.25 9.35 60.06 0.56 0.82 16 24 C 0.03 0.33 9.39 60.06 0.56 0.89 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 29 H 0.06 0.84 6.29 -51.92 -0.33 0.51 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.04 1.31 7.42 -51.92 -0.39 0.92 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.41 6.21 5.96 -40.82 -0.24 5.96 16 34 H 0.15 3.01 5.78 -52.49 -0.30 2.71 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.18 7.02 -52.49 -0.37 0.81 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.03 0.25 7.13 -51.93 -0.37 -0.12 16 40 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 41 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.28 7.35 -51.93 -0.38 -0.10 16 LS Contribution 353.03 15.07 5.32 5.32 Total: -1.00 -32.65 353.03 -8.86 -41.51 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.56 Total: 5.01 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.08 Total: 3.72 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.59 Total: -58.11 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.07 Total: -14.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.65 -8.86 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080167667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.458 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds