Wall clock time and date at job start Tue Mar 31 2020 06:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47327 * 2 1 4 4 C 1.46492 * 119.99734 * 269.99872 * 3 2 1 5 5 C 1.50702 * 109.47331 * 270.00122 * 4 3 2 6 6 H 1.08000 * 119.99886 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00418 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99745 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00363 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46831 * 59.99786 * 9 7 5 11 11 H 1.48491 * 109.47446 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00444 * 9 7 5 13 13 C 1.34773 * 120.00120 * 89.99703 * 3 2 1 14 14 O 1.21601 * 119.99972 * 180.02562 * 13 3 2 15 15 N 1.34780 * 120.00244 * 0.02562 * 13 3 2 16 16 C 1.40204 * 119.99876 * 185.62717 * 15 13 3 17 17 C 1.38649 * 120.09848 * 24.76731 * 16 15 13 18 18 C 1.38241 * 120.00487 * 180.29811 * 17 16 15 19 19 C 1.38278 * 120.19645 * 359.67505 * 18 17 16 20 20 C 1.38234 * 120.18823 * 0.02562 * 19 18 17 21 21 C 1.38704 * 119.99370 * 0.02562 * 20 19 18 22 22 N 1.39930 * 120.09716 * 179.97438 * 21 20 19 23 23 C 1.46900 * 110.99361 * 60.00292 * 22 21 20 24 24 C 1.46899 * 111.00150 * 296.04824 * 22 21 20 25 25 H 1.09003 * 109.47139 * 300.00532 * 1 2 3 26 26 H 1.08995 * 109.46580 * 59.99876 * 1 2 3 27 27 H 1.09001 * 109.47368 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47213 * 239.99516 * 2 1 3 29 29 H 1.09007 * 109.46588 * 119.99746 * 2 1 3 30 30 H 1.09004 * 109.47529 * 30.00116 * 4 3 2 31 31 H 1.09008 * 109.47609 * 150.00091 * 4 3 2 32 32 H 0.96996 * 119.99828 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99577 * 5.62302 * 15 13 3 34 34 H 1.08002 * 119.99765 * 359.97199 * 17 16 15 35 35 H 1.07997 * 119.90539 * 179.70468 * 18 17 16 36 36 H 1.07995 * 119.91019 * 180.02562 * 19 18 17 37 37 H 1.07995 * 120.00099 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47693 * 60.00274 * 23 22 21 39 39 H 1.08999 * 109.47253 * 299.99441 * 23 22 21 40 40 H 1.09006 * 109.46876 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.46990 * 179.97438 * 24 22 21 42 42 H 1.08995 * 109.46689 * 300.00116 * 24 22 21 43 43 H 1.09002 * 109.46824 * 59.99563 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6859 1.8348 -1.7038 6 1 4.3430 1.2307 -1.0958 7 6 4.1496 2.3902 -2.8775 8 7 3.3499 3.1271 -3.6171 9 14 5.9140 2.0972 -3.4164 10 1 6.1417 0.6405 -3.5942 11 1 6.1618 2.7980 -4.7018 12 1 6.8412 2.6203 -2.3811 13 6 2.2430 2.0166 1.1672 14 8 2.6479 3.1632 1.1671 15 7 2.0188 1.3811 2.3344 16 6 2.1385 2.0770 3.5457 17 6 1.9750 3.4535 3.5758 18 6 2.0996 4.1385 4.7701 19 6 2.3806 3.4541 5.9384 20 6 2.5390 2.0810 5.9186 21 6 2.4168 1.3860 4.7245 22 7 2.5773 -0.0039 4.7020 23 6 1.5903 -0.6618 5.5685 24 6 3.9454 -0.3820 5.0806 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5818 1.6876 -2.0284 31 1 2.0957 3.1410 -1.1385 32 1 3.6762 3.5181 -4.4427 33 1 1.7746 0.4424 2.3364 34 1 1.7555 3.9913 2.6653 35 1 1.9766 5.2112 4.7909 36 1 2.4765 3.9938 6.8689 37 1 2.7588 1.5496 6.8327 38 1 0.5851 -0.4205 5.2228 39 1 1.7160 -0.3121 6.5932 40 1 1.7372 -1.7413 5.5320 41 1 4.0425 -1.4674 5.0552 42 1 4.6522 0.0629 4.3802 43 1 4.1563 -0.0221 6.0876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080167667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:41 Heat of formation + Delta-G solvation = -0.584552 kcal Electronic energy + Delta-G solvation = -23872.114732 eV Core-core repulsion = 20531.226174 eV Total energy + Delta-G solvation = -3340.888558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84433 -40.30898 -37.57032 -36.91649 -35.80845 -34.72986 -31.65507 -31.01509 -30.51002 -28.65898 -28.45025 -25.48254 -25.20311 -24.42939 -23.19752 -21.99706 -20.66695 -19.32108 -18.57903 -18.27998 -17.60148 -16.85208 -16.57650 -16.19417 -16.00216 -15.78832 -15.36958 -15.19678 -14.85951 -14.54017 -14.51038 -14.27301 -13.78796 -13.55920 -13.28195 -13.16527 -13.10994 -13.04721 -12.78260 -12.69138 -12.59499 -12.52955 -12.24043 -12.18987 -11.91705 -11.75975 -11.43188 -10.84628 -10.62668 -9.70796 -9.55866 -9.48062 -8.83252 -8.20254 -6.35234 0.33980 0.45457 1.36439 1.40952 1.48006 1.75371 2.19205 2.39909 2.84992 2.93189 3.04646 3.09950 3.99537 4.04569 4.18629 4.21785 4.35674 4.41319 4.44040 4.46823 4.53594 4.61701 4.66964 4.74751 4.87079 4.92922 4.95877 5.00081 5.00931 5.04298 5.19716 5.29064 5.34520 5.40898 5.56979 5.60118 5.67927 5.81060 5.92611 5.98074 6.07748 6.14698 6.44695 6.72845 7.08411 7.31546 7.64913 8.85857 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.004423 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.850396 B = 6329.721356 C = 6597.022465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.612 5.612 4 C 0.279 3.721 5 C -0.543 4.543 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.276 1.276 12 H -0.281 1.281 13 C 0.693 3.307 14 O -0.619 6.619 15 N -0.663 5.663 16 C 0.176 3.824 17 C -0.159 4.159 18 C -0.104 4.104 19 C -0.133 4.133 20 C -0.123 4.123 21 C 0.043 3.957 22 N -0.522 5.522 23 C 0.028 3.972 24 C 0.032 3.968 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.028 0.972 31 H -0.001 1.001 32 H 0.267 0.733 33 H 0.419 0.581 34 H 0.115 0.885 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 -9.844 20.863 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.021 4.021 3 N -0.346 5.346 4 C 0.158 3.842 5 C -0.582 4.582 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.201 1.201 12 H -0.207 1.207 13 C 0.395 3.605 14 O -0.500 6.500 15 N -0.311 5.311 16 C 0.079 3.921 17 C -0.180 4.180 18 C -0.123 4.123 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.054 4.054 22 N -0.244 5.244 23 C -0.118 4.118 24 C -0.114 4.114 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.259 0.741 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.743 -9.197 20.067 22.578 hybrid contribution 0.884 0.244 -0.212 0.941 sum -3.860 -8.953 19.855 22.119 Atomic orbital electron populations 1.22143 0.94398 1.03614 1.01561 1.21676 0.95416 0.81460 1.03549 1.47497 1.67169 1.15152 1.04774 1.18648 0.95268 0.91354 0.78940 1.21676 0.97934 1.32102 1.06493 0.93248 1.25805 1.02247 0.94440 0.96351 1.70038 1.37736 1.34042 1.14831 0.85499 0.79137 0.79032 0.77306 1.18441 1.20140 1.20694 1.16143 0.78748 0.84450 0.81200 1.90817 1.53663 1.19064 1.86459 1.42573 1.71650 1.14593 1.02275 1.17763 0.98528 0.91395 0.84450 1.21416 1.03395 0.93500 0.99717 1.21289 0.98628 1.00748 0.91610 1.21272 1.01251 0.94090 0.98620 1.21585 1.00195 0.95117 0.97397 1.18484 1.05235 0.90003 0.91678 1.59448 1.05920 1.03859 1.55138 1.22525 0.94885 0.99934 0.94454 1.22435 0.87448 1.02318 0.99243 0.93060 0.93703 0.88277 0.90076 0.89572 0.95360 0.98307 0.92373 0.74103 0.86710 0.84408 0.82955 0.83499 0.91683 0.93968 0.89189 0.89000 0.93514 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 10.24 71.98 0.74 -3.49 16 2 C 0.10 3.30 5.94 86.38 0.51 3.82 16 3 N -0.61 -27.50 2.46 -844.18 -2.07 -29.57 16 4 C 0.28 15.51 5.16 85.64 0.44 15.96 16 5 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.63 5.46 84.65 0.46 1.09 16 8 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 9 Si 0.97 45.85 29.54 68.60 2.03 47.87 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 C 0.69 31.86 8.09 179.05 1.45 33.30 16 14 O -0.62 -34.27 13.09 -4.04 -0.05 -34.32 16 15 N -0.66 -23.69 5.16 -316.67 -1.63 -25.33 16 16 C 0.18 5.97 6.45 38.19 0.25 6.22 16 17 C -0.16 -5.70 8.72 22.37 0.20 -5.51 16 18 C -0.10 -2.85 10.04 22.28 0.22 -2.63 16 19 C -0.13 -2.85 10.04 22.28 0.22 -2.63 16 20 C -0.12 -2.61 8.57 22.38 0.19 -2.42 16 21 C 0.04 1.12 4.75 38.25 0.18 1.30 16 22 N -0.52 -11.08 4.32 -744.48 -3.22 -14.30 16 23 C 0.03 0.42 9.35 127.69 1.19 1.61 16 24 C 0.03 0.59 9.39 127.69 1.20 1.79 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 29 H 0.09 2.33 6.29 -2.38 -0.01 2.31 16 30 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 31 H 0.00 -0.08 7.42 -2.38 -0.02 -0.09 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.42 12.57 5.96 -92.71 -0.55 12.01 16 34 H 0.12 5.00 5.78 -2.91 -0.02 4.98 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.15 2.24 7.02 -2.91 -0.02 2.22 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.04 0.53 7.13 -2.39 -0.02 0.51 16 40 H 0.09 0.99 8.12 -2.38 -0.02 0.97 16 41 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.04 0.68 7.35 -2.39 -0.02 0.66 16 Total: -1.00 -75.83 353.03 3.28 -72.55 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.45 Total: 23.09 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 7.50 Total: 16.49 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -6.64 Total: -125.68 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.05 Total: -34.32 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.83 3.28 -72.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080167667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.968 kcal (2) G-P(sol) polarization free energy of solvation -75.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds