Wall clock time and date at job start Tue Mar 31 2020 06:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47299 * 2 1 4 4 C 1.46504 * 120.00383 * 90.00004 * 3 2 1 5 5 C 1.50707 * 109.46935 * 270.00600 * 4 3 2 6 6 C 1.38227 * 119.62059 * 95.01845 * 5 4 3 7 7 C 1.38627 * 119.15702 * 179.74122 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61137 * 274.99275 * 5 4 3 11 11 C 1.34777 * 119.99928 * 270.00437 * 3 2 1 12 12 O 1.21595 * 120.00119 * 180.02562 * 11 3 2 13 13 N 1.34772 * 120.00131 * 359.97438 * 11 3 2 14 14 C 1.46500 * 120.00179 * 180.02562 * 13 11 3 15 15 C 1.52995 * 109.47258 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47203 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47202 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99724 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99789 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99838 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00357 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47147 * 89.99935 * 21 19 17 23 23 H 1.48500 * 109.47287 * 210.00079 * 21 19 17 24 24 H 1.48503 * 109.47069 * 330.00219 * 21 19 17 25 25 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47119 * 300.00218 * 1 2 3 27 27 H 1.09000 * 109.47474 * 59.99788 * 1 2 3 28 28 H 1.08998 * 109.46792 * 239.99945 * 2 1 3 29 29 H 1.08997 * 109.47066 * 119.99900 * 2 1 3 30 30 H 1.08997 * 109.47679 * 150.00067 * 4 3 2 31 31 H 1.09003 * 109.46652 * 30.00027 * 4 3 2 32 32 H 1.07998 * 120.41916 * 359.95342 * 6 5 4 33 33 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 34 34 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 35 35 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 36 36 H 0.96999 * 120.00266 * 0.02562 * 13 11 3 37 37 H 1.09000 * 109.47235 * 300.00775 * 14 13 11 38 38 H 1.09009 * 109.46978 * 60.00009 * 14 13 11 39 39 H 1.09000 * 109.47409 * 300.00397 * 15 14 13 40 40 H 1.08998 * 109.46962 * 60.00314 * 15 14 13 41 41 H 1.09000 * 109.47189 * 300.00442 * 16 15 14 42 42 H 1.08998 * 109.46979 * 60.00234 * 16 15 14 43 43 H 0.96995 * 120.00531 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 1.2687 5 6 1.0067 2.7822 1.7038 6 6 0.1414 2.1620 2.5854 7 6 -1.0083 2.8264 2.9834 8 6 -1.2510 4.0913 2.4698 9 6 -0.3398 4.6481 1.5926 10 7 0.7463 3.9885 1.2393 11 6 2.2429 2.0165 -1.1672 12 8 2.6487 3.1628 -1.1673 13 7 2.0187 1.3811 -2.3344 14 6 2.2633 2.0715 -3.6031 15 6 1.9317 1.1342 -4.7660 16 6 2.1878 1.8551 -6.0911 17 6 1.8605 0.9321 -7.2365 18 1 1.5058 -0.0687 -7.0391 19 6 2.0150 1.3650 -8.5364 20 7 1.7299 0.5594 -9.5360 21 14 2.6292 3.0958 -8.8778 22 1 4.1114 3.0863 -8.9673 23 1 2.0589 3.5794 -10.1608 24 1 2.2056 3.9975 -7.7766 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0645 2.7985 1.1384 31 1 2.5507 1.3452 2.0284 32 1 0.3601 1.1737 2.9620 33 1 -1.7007 2.3679 3.6740 34 1 -2.1385 4.6365 2.7552 35 1 -0.5195 5.6345 1.1913 36 1 1.6953 0.4666 -2.3344 37 1 1.6333 2.9591 -3.6612 38 1 3.3114 2.3656 -3.6605 39 1 2.5614 0.2464 -4.7081 40 1 0.8836 0.8406 -4.7084 41 1 1.5583 2.7431 -6.1492 42 1 3.2360 2.1484 -6.1484 43 1 1.8382 0.8639 -10.4506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084157289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:23 Heat of formation + Delta-G solvation = 2.143857 kcal Electronic energy + Delta-G solvation = -22867.640246 eV Core-core repulsion = 19526.870002 eV Total energy + Delta-G solvation = -3340.770245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68970 -39.71956 -36.30164 -35.36992 -33.42634 -32.77312 -32.24973 -31.21409 -30.52129 -27.64328 -26.18130 -23.77840 -23.58226 -22.86618 -22.06331 -20.53076 -19.51048 -18.03599 -17.21978 -16.79370 -16.45484 -16.21390 -15.99879 -15.27535 -14.66342 -14.44412 -14.13769 -14.05136 -13.87861 -13.66463 -13.51340 -13.28097 -12.95504 -12.66344 -12.41133 -11.97758 -11.88992 -11.88333 -11.80335 -11.39859 -10.98747 -10.85293 -10.15081 -10.09766 -9.93569 -9.76718 -9.64946 -9.60123 -9.24429 -9.19370 -8.90513 -8.53776 -8.52000 -6.03893 -4.02303 0.81036 1.06365 2.70161 3.34143 3.39878 3.41453 3.46877 3.66653 4.03614 4.10030 4.45171 4.47365 4.60900 4.65424 4.75014 4.87567 4.96352 5.02027 5.15782 5.29888 5.30536 5.44169 5.48109 5.54695 5.58141 5.63034 5.75859 5.85036 5.90248 5.96519 6.10290 6.35762 6.45247 6.48698 6.52707 6.75036 6.89412 6.99353 7.27695 7.41070 7.78711 7.88474 8.10854 8.53007 8.80925 9.00009 9.58678 11.09399 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.002964 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.241212 B = 9443.434048 C = 9816.652375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 N -0.628 5.628 4 C 0.183 3.817 5 C 0.113 3.887 6 C -0.163 4.163 7 C -0.081 4.081 8 C -0.175 4.175 9 C 0.099 3.901 10 N -0.452 5.452 11 C 0.702 3.298 12 O -0.572 6.572 13 N -0.743 5.743 14 C 0.133 3.867 15 C -0.112 4.112 16 C -0.011 4.011 17 C -0.521 4.521 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.154 0.846 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 0.183 29.011 29.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.017 4.017 3 N -0.366 5.366 4 C 0.058 3.942 5 C -0.027 4.027 6 C -0.184 4.184 7 C -0.107 4.107 8 C -0.196 4.196 9 C -0.058 4.058 10 N -0.160 5.160 11 C 0.403 3.597 12 O -0.448 6.448 13 N -0.399 5.399 14 C 0.010 3.990 15 C -0.150 4.150 16 C -0.049 4.049 17 C -0.559 4.559 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.188 1.188 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.171 0.829 36 H 0.228 0.772 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.606 1.423 28.182 28.448 hybrid contribution -0.762 -0.042 0.260 0.806 sum -4.368 1.381 28.443 28.809 Atomic orbital electron populations 1.22340 0.96045 1.02289 1.03038 1.21527 0.94483 0.82570 1.03147 1.47115 1.71156 1.13815 1.04515 1.20097 0.93640 0.95927 0.84493 1.21794 0.96953 0.91123 0.92859 1.21952 0.95635 1.01050 0.99755 1.21545 0.96574 0.94551 0.97999 1.22181 1.01128 0.96746 0.99500 1.22873 0.89520 0.99609 0.93831 1.67666 1.19140 1.07801 1.21434 1.15931 0.78898 0.84536 0.80301 1.90952 1.51862 1.16086 1.85879 1.45481 1.71833 1.17503 1.05053 1.21489 1.01014 0.95839 0.80695 1.21693 1.01116 0.98132 0.94066 1.19498 0.96536 0.96544 0.92296 1.21104 1.44655 1.00672 0.89449 0.91045 1.25026 0.94865 0.97370 0.96230 1.69911 1.49286 1.36115 0.99015 0.86775 0.79338 0.85409 0.77801 1.20229 1.21407 1.18831 0.91440 0.92083 0.92246 0.90436 0.90140 0.87982 0.89102 0.84998 0.85012 0.84968 0.82867 0.77194 0.92098 0.92010 0.92240 0.92284 0.96299 0.96695 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.11 0.85 5.94 -4.04 -0.02 0.83 16 3 N -0.63 -7.28 2.46 -180.80 -0.44 -7.73 16 4 C 0.18 1.90 5.76 -5.19 -0.03 1.87 16 5 C 0.11 1.24 6.21 -82.58 -0.51 0.73 16 6 C -0.16 -1.32 7.76 -39.44 -0.31 -1.63 16 7 C -0.08 -0.60 10.18 -39.28 -0.40 -1.00 16 8 C -0.18 -1.44 10.11 -39.44 -0.40 -1.84 16 9 C 0.10 1.07 11.18 -17.55 -0.20 0.87 16 10 N -0.45 -6.13 10.27 -9.47 -0.10 -6.22 16 11 C 0.70 11.19 8.28 -86.92 -0.72 10.47 16 12 O -0.57 -11.48 15.92 5.28 0.08 -11.39 16 13 N -0.74 -11.21 5.42 -65.22 -0.35 -11.56 16 14 C 0.13 2.36 5.67 -4.04 -0.02 2.34 16 15 C -0.11 -2.16 5.27 -26.73 -0.14 -2.30 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 21 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.50 5.81 -51.93 -0.30 0.20 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 29 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 30 H 0.10 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.09 0.59 7.79 -51.93 -0.40 0.18 16 32 H 0.13 0.71 8.03 -52.49 -0.42 0.29 16 33 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.39 4.93 6.20 -40.82 -0.25 4.67 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 42 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -36.01 355.62 -8.92 -44.94 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.66 Total: 0.91 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.91 Total: -4.44 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.12 Total: -52.78 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.01 -8.92 -44.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084157289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.083 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds