Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47299 * 2 1 4 4 C 1.46504 * 120.00383 * 90.00004 * 3 2 1 5 5 C 1.50707 * 109.46935 * 270.00600 * 4 3 2 6 6 C 1.38227 * 119.62059 * 95.01845 * 5 4 3 7 7 C 1.38627 * 119.15702 * 179.74122 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61137 * 274.99275 * 5 4 3 11 11 C 1.34777 * 119.99928 * 270.00437 * 3 2 1 12 12 O 1.21595 * 120.00119 * 180.02562 * 11 3 2 13 13 N 1.34772 * 120.00131 * 359.97438 * 11 3 2 14 14 C 1.46500 * 120.00179 * 180.02562 * 13 11 3 15 15 C 1.52995 * 109.47258 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47203 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47202 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99724 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99789 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99838 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00357 * 359.97438 * 19 17 16 22 22 H 1.48493 * 109.47147 * 89.99935 * 21 19 17 23 23 H 1.48500 * 109.47287 * 210.00079 * 21 19 17 24 24 H 1.48503 * 109.47069 * 330.00219 * 21 19 17 25 25 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47119 * 300.00218 * 1 2 3 27 27 H 1.09000 * 109.47474 * 59.99788 * 1 2 3 28 28 H 1.08998 * 109.46792 * 239.99945 * 2 1 3 29 29 H 1.08997 * 109.47066 * 119.99900 * 2 1 3 30 30 H 1.08997 * 109.47679 * 150.00067 * 4 3 2 31 31 H 1.09003 * 109.46652 * 30.00027 * 4 3 2 32 32 H 1.07998 * 120.41916 * 359.95342 * 6 5 4 33 33 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 34 34 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 35 35 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 36 36 H 0.96999 * 120.00266 * 0.02562 * 13 11 3 37 37 H 1.09000 * 109.47235 * 300.00775 * 14 13 11 38 38 H 1.09009 * 109.46978 * 60.00009 * 14 13 11 39 39 H 1.09000 * 109.47409 * 300.00397 * 15 14 13 40 40 H 1.08998 * 109.46962 * 60.00314 * 15 14 13 41 41 H 1.09000 * 109.47189 * 300.00442 * 16 15 14 42 42 H 1.08998 * 109.46979 * 60.00234 * 16 15 14 43 43 H 0.96995 * 120.00531 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 1.2687 5 6 1.0067 2.7822 1.7038 6 6 0.1414 2.1620 2.5854 7 6 -1.0083 2.8264 2.9834 8 6 -1.2510 4.0913 2.4698 9 6 -0.3398 4.6481 1.5926 10 7 0.7463 3.9885 1.2393 11 6 2.2429 2.0165 -1.1672 12 8 2.6487 3.1628 -1.1673 13 7 2.0187 1.3811 -2.3344 14 6 2.2633 2.0715 -3.6031 15 6 1.9317 1.1342 -4.7660 16 6 2.1878 1.8551 -6.0911 17 6 1.8605 0.9321 -7.2365 18 1 1.5058 -0.0687 -7.0391 19 6 2.0150 1.3650 -8.5364 20 7 1.7299 0.5594 -9.5360 21 14 2.6292 3.0958 -8.8778 22 1 4.1114 3.0863 -8.9673 23 1 2.0589 3.5794 -10.1608 24 1 2.2056 3.9975 -7.7766 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0645 2.7985 1.1384 31 1 2.5507 1.3452 2.0284 32 1 0.3601 1.1737 2.9620 33 1 -1.7007 2.3679 3.6740 34 1 -2.1385 4.6365 2.7552 35 1 -0.5195 5.6345 1.1913 36 1 1.6953 0.4666 -2.3344 37 1 1.6333 2.9591 -3.6612 38 1 3.3114 2.3656 -3.6605 39 1 2.5614 0.2464 -4.7081 40 1 0.8836 0.8406 -4.7084 41 1 1.5583 2.7431 -6.1492 42 1 3.2360 2.1484 -6.1484 43 1 1.8382 0.8639 -10.4506 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084157289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = -22.263620 kcal Electronic energy + Delta-G solvation = -22868.698634 eV Core-core repulsion = 19526.870002 eV Total energy + Delta-G solvation = -3341.828633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56633 -40.67671 -37.40931 -36.78427 -35.18757 -33.70424 -33.26683 -32.65662 -31.29101 -29.17533 -27.31797 -24.80002 -24.40488 -24.02952 -22.98816 -22.21707 -20.71688 -19.22783 -18.74686 -17.93114 -17.44370 -17.06297 -16.89010 -16.39774 -16.33342 -15.62719 -15.51858 -15.10963 -14.79519 -14.70491 -14.63738 -14.27661 -14.06513 -13.80580 -13.66025 -13.51772 -13.05590 -12.74912 -12.69727 -12.61930 -12.54338 -12.05530 -11.88362 -11.77444 -11.60815 -11.33754 -11.14106 -10.76604 -10.76293 -10.38774 -10.13807 -9.93121 -9.52741 -8.30013 -6.33591 0.13752 0.42926 1.36258 1.37893 1.50099 1.70422 2.20163 2.35985 2.86411 3.05705 3.10285 3.41141 3.82877 4.02536 4.04806 4.08700 4.19488 4.19568 4.27964 4.33528 4.39290 4.49133 4.57899 4.62685 4.79890 4.83686 4.86185 4.88654 4.91403 4.96469 5.02764 5.22309 5.28822 5.33630 5.40968 5.53477 5.54603 5.58497 5.65134 5.83358 5.91723 6.27024 6.73830 6.99670 7.19353 7.31201 7.62066 8.86390 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.002964 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.241212 B = 9443.434048 C = 9816.652375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 N -0.619 5.619 4 C 0.180 3.820 5 C 0.089 3.911 6 C -0.153 4.153 7 C -0.081 4.081 8 C -0.171 4.171 9 C 0.069 3.931 10 N -0.505 5.505 11 C 0.696 3.304 12 O -0.621 6.621 13 N -0.735 5.735 14 C 0.148 3.852 15 C -0.097 4.097 16 C -0.011 4.011 17 C -0.529 4.529 18 H 0.039 0.961 19 C 0.006 3.994 20 N -0.949 5.949 21 Si 0.946 3.054 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.251 1.251 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.406 0.594 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -0.642 31.736 32.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.355 5.355 4 C 0.056 3.944 5 C -0.051 4.051 6 C -0.173 4.173 7 C -0.106 4.106 8 C -0.190 4.190 9 C -0.087 4.087 10 N -0.215 5.215 11 C 0.397 3.603 12 O -0.501 6.501 13 N -0.393 5.393 14 C 0.023 3.977 15 C -0.135 4.135 16 C -0.049 4.049 17 C -0.567 4.567 18 H 0.057 0.943 19 C -0.191 4.191 20 N -0.590 5.590 21 Si 0.769 3.231 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.175 1.175 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.184 0.816 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.244 0.756 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.193 0.548 30.957 31.244 hybrid contribution -0.657 0.120 -0.509 0.840 sum -4.850 0.668 30.448 30.839 Atomic orbital electron populations 1.22294 0.95889 1.03311 1.01639 1.21856 0.94525 0.80549 1.05260 1.47166 1.69936 1.14973 1.03451 1.20308 0.92862 0.96430 0.84767 1.21941 0.97897 0.90943 0.94288 1.22262 0.94821 1.02110 0.98099 1.22020 0.96785 0.94019 0.97809 1.22474 1.01082 0.97353 0.98134 1.23067 0.90100 1.00158 0.95409 1.67555 1.20867 1.09662 1.23414 1.16173 0.78633 0.84100 0.81402 1.90916 1.54056 1.18371 1.86749 1.45218 1.71903 1.17990 1.04178 1.21095 1.00176 0.94997 0.81404 1.21453 1.01459 0.98081 0.92466 1.19455 0.96619 0.95914 0.92934 1.21442 1.43960 1.00167 0.91169 0.94252 1.25949 0.95199 1.01841 0.96067 1.70047 1.50930 1.38423 0.99622 0.85722 0.79187 0.80127 0.78038 1.19120 1.20884 1.17478 0.89130 0.91859 0.95258 0.90187 0.86186 0.91245 0.84511 0.81578 0.81507 0.82414 0.82866 0.75594 0.93588 0.92716 0.91491 0.92013 0.96376 0.96164 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 71.98 0.74 -1.57 16 2 C 0.10 1.29 5.94 86.38 0.51 1.80 16 3 N -0.62 -13.52 2.46 -844.18 -2.07 -15.59 16 4 C 0.18 3.53 5.76 85.63 0.49 4.02 16 5 C 0.09 1.87 6.21 42.55 0.26 2.13 16 6 C -0.15 -1.99 7.76 22.36 0.17 -1.81 16 7 C -0.08 -0.93 10.18 22.47 0.23 -0.70 16 8 C -0.17 -2.49 10.11 22.36 0.23 -2.27 16 9 C 0.07 1.53 11.18 84.67 0.95 2.47 16 10 N -0.51 -14.11 10.27 -183.88 -1.89 -16.00 16 11 C 0.70 22.25 8.28 179.06 1.48 23.73 16 12 O -0.62 -25.87 15.92 -4.02 -0.06 -25.93 16 13 N -0.74 -21.94 5.42 -478.53 -2.59 -24.53 16 14 C 0.15 5.24 5.67 86.38 0.49 5.73 16 15 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 16 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 17 C -0.53 -30.61 9.66 25.60 0.25 -30.36 16 18 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 19 C 0.01 0.38 5.47 84.66 0.46 0.84 16 20 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 21 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.25 -11.45 6.54 99.48 0.65 -10.79 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.82 5.81 -2.38 -0.01 0.80 16 27 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 1.02 6.36 -2.39 -0.02 1.00 16 29 H 0.12 0.68 7.89 -2.39 -0.02 0.66 16 30 H 0.07 1.82 7.42 -2.39 -0.02 1.80 16 31 H 0.14 1.29 7.79 -2.39 -0.02 1.28 16 32 H 0.17 0.92 8.03 -2.91 -0.02 0.90 16 33 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.41 9.73 6.20 -92.71 -0.58 9.16 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 42 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -82.18 355.62 2.48 -79.70 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.37 Total: 14.58 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.55 Total: 0.08 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -6.26 Total: -115.72 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.06 Total: -25.93 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -82.18 2.48 -79.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084157289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.438 kcal (2) G-P(sol) polarization free energy of solvation -82.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds