Wall clock time and date at job start Tue Mar 31 2020 06:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46844 * 2 1 4 4 C 1.46499 * 119.99972 * 277.51066 * 3 2 1 5 5 C 1.50698 * 109.47461 * 270.00302 * 4 3 2 6 6 H 1.07999 * 119.99510 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00079 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00145 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99984 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47175 * 119.99838 * 9 7 5 12 12 H 1.48501 * 109.46824 * 240.00010 * 9 7 5 13 13 C 1.34782 * 119.99996 * 97.51554 * 3 2 1 14 14 O 1.21589 * 119.99579 * 185.70373 * 13 3 2 15 15 C 1.47542 * 119.99973 * 5.71029 * 13 3 2 16 16 C 1.40347 * 120.47802 * 134.57004 * 15 13 3 17 17 C 1.36850 * 118.49555 * 179.97438 * 16 15 13 18 18 C 1.39399 * 119.38009 * 0.02562 * 17 16 15 19 19 N 1.38452 * 119.54030 * 179.97438 * 18 17 16 20 20 C 1.46500 * 120.00232 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.47029 * 154.72709 * 20 19 18 22 22 C 1.53001 * 109.46913 * 274.72488 * 20 19 18 23 23 N 1.32604 * 120.92040 * 0.25275 * 18 17 16 24 24 C 1.31687 * 121.63624 * 359.47454 * 23 18 17 25 25 H 1.09003 * 109.47223 * 189.19592 * 1 2 3 26 26 H 1.09004 * 109.47125 * 309.19019 * 1 2 3 27 27 H 1.08992 * 109.47335 * 69.19088 * 1 2 3 28 28 H 1.08999 * 109.47088 * 239.99962 * 2 1 3 29 29 H 1.09003 * 109.46903 * 119.99930 * 2 1 3 30 30 H 1.09001 * 109.46855 * 30.00524 * 4 3 2 31 31 H 1.08999 * 109.46764 * 150.00144 * 4 3 2 32 32 H 0.96996 * 119.99977 * 179.97438 * 8 7 5 33 33 H 1.08005 * 120.74941 * 359.94969 * 16 15 13 34 34 H 1.07995 * 120.31371 * 180.02562 * 17 16 15 35 35 H 0.97007 * 119.99482 * 179.72336 * 19 18 17 36 36 H 1.09000 * 109.46936 * 34.72195 * 20 19 18 37 37 H 1.09000 * 109.47519 * 60.00473 * 21 20 19 38 38 H 1.09005 * 109.46555 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47259 * 299.99808 * 21 20 19 40 40 H 1.08999 * 109.46897 * 59.99934 * 22 20 19 41 41 H 1.08997 * 109.47366 * 179.97438 * 22 20 19 42 42 H 1.09007 * 109.47161 * 300.00017 * 22 20 19 43 43 H 1.07995 * 119.73836 * 180.26834 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1060 2.1271 -1.2578 5 6 3.4642 1.9134 -1.8750 6 1 4.1892 1.2845 -1.3799 7 6 3.7806 2.5199 -3.0720 8 7 2.8974 3.2853 -3.6751 9 14 5.4639 2.2544 -3.8373 10 1 6.2674 1.3585 -2.9674 11 1 5.3062 1.6333 -5.1769 12 1 6.1563 3.5607 -3.9757 13 6 2.3868 1.9657 1.1572 14 8 2.6930 3.1423 1.1734 15 6 2.4188 1.1778 2.4042 16 6 3.5125 1.2730 3.2786 17 6 3.4997 0.5244 4.4241 18 6 2.4103 -0.3046 4.6872 19 7 2.3941 -1.0638 5.8449 20 6 3.5170 -0.9930 6.7831 21 6 3.0346 -1.3696 8.1853 22 6 4.6121 -1.9662 6.3420 23 7 1.3917 -0.3803 3.8415 24 6 1.3620 0.3268 2.7310 25 1 -0.3634 -1.0145 0.1642 26 1 -0.3633 0.6494 0.7965 27 1 -0.3633 0.3651 -0.9605 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3357 1.7746 -1.9437 31 1 1.9592 3.1892 -1.0614 32 1 3.1202 3.7123 -4.5170 33 1 4.3456 1.9220 3.0522 34 1 4.3258 0.5753 5.1178 35 1 1.6375 -1.6398 6.0365 36 1 3.9161 0.0213 6.7962 37 1 2.6356 -2.3839 8.1721 38 1 3.8701 -1.3165 8.8834 39 1 2.2544 -0.6763 8.4995 40 1 4.9558 -1.6979 5.3430 41 1 5.4479 -1.9133 7.0398 42 1 4.2131 -2.9805 6.3288 43 1 0.5149 0.2447 2.0661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084408602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:52 Heat of formation + Delta-G solvation = 8.316257 kcal Electronic energy + Delta-G solvation = -23243.943145 eV Core-core repulsion = 19903.440556 eV Total energy + Delta-G solvation = -3340.502590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54264 -38.76198 -37.02320 -35.36009 -33.01998 -32.58092 -31.97045 -30.18324 -29.27718 -27.62235 -26.90875 -23.97680 -23.60554 -22.97985 -22.11454 -21.12600 -18.84063 -17.87948 -16.98518 -16.68254 -16.33143 -15.68106 -15.11748 -14.86263 -14.74747 -14.44256 -14.03339 -14.00588 -13.35018 -13.22255 -13.05340 -12.83897 -12.63699 -12.59379 -12.35971 -12.09332 -11.89161 -11.77090 -11.51847 -11.37859 -11.17736 -10.84297 -10.76815 -10.58260 -10.17051 -10.12232 -9.69496 -9.60246 -9.56463 -8.84803 -8.41641 -7.74262 -7.58875 -6.02217 -4.06822 1.22195 1.47487 2.94012 3.31119 3.38188 3.41517 3.48442 3.89867 4.16814 4.40025 4.46628 4.65630 4.66380 4.79562 4.91957 5.09703 5.16209 5.18481 5.29762 5.32448 5.37710 5.39728 5.41038 5.53572 5.62374 5.68029 5.74827 5.85098 5.89571 6.03698 6.11663 6.28893 6.34450 6.48646 6.58765 6.93619 7.13033 7.42297 7.49459 7.58369 7.94947 8.13894 8.26320 8.45194 8.92430 9.11853 9.58287 11.05860 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.003585 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.682552 B = 7807.682921 C = 8366.023220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.098 3.902 3 N -0.590 5.590 4 C 0.245 3.755 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.558 3.442 14 O -0.540 6.540 15 C -0.228 4.228 16 C 0.013 3.987 17 C -0.246 4.246 18 C 0.409 3.591 19 N -0.719 5.719 20 C 0.144 3.856 21 C -0.160 4.160 22 C -0.171 4.171 23 N -0.549 5.549 24 C 0.164 3.836 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.262 0.738 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.403 0.597 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -12.019 20.310 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.321 5.321 4 C 0.126 3.874 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.344 3.656 14 O -0.419 6.419 15 C -0.236 4.236 16 C -0.014 4.014 17 C -0.271 4.271 18 C 0.173 3.827 19 N -0.352 5.352 20 C 0.039 3.961 21 C -0.218 4.218 22 C -0.230 4.230 23 N -0.266 5.266 24 C 0.006 3.994 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.238 0.762 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.624 -11.803 20.440 23.659 hybrid contribution 1.359 0.128 -0.708 1.537 sum -0.265 -11.675 19.732 22.929 Atomic orbital electron populations 1.22355 0.96703 1.01522 1.02737 1.21626 0.93586 0.84481 1.02980 1.48170 1.62228 1.13230 1.08469 1.19301 0.96994 0.92869 0.78212 1.21490 0.99538 1.29765 1.05710 0.92393 1.24932 0.97309 0.94946 0.96917 1.69943 1.34455 1.31466 1.17471 0.86451 0.84101 0.78026 0.78901 1.19815 1.20974 1.20883 1.17899 0.78137 0.86697 0.82853 1.90748 1.49279 1.15778 1.86048 1.20897 0.98783 1.04531 0.99427 1.21100 0.96371 0.93330 0.90559 1.21061 1.00908 1.03927 1.01157 1.18476 0.89519 0.88067 0.86599 1.44473 1.23061 1.47786 1.19831 1.20981 0.86660 1.00179 0.88292 1.22056 1.02272 1.02200 0.95229 1.22322 0.98450 0.99912 1.02296 1.67265 1.26569 1.27302 1.05469 1.23316 0.96989 0.87845 0.91220 0.91758 0.92459 0.91462 0.90056 0.91074 0.94812 0.93622 0.92785 0.84391 0.84951 0.76170 0.89875 0.91975 0.90841 0.91845 0.91930 0.91575 0.92202 0.81142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.15 37.16 0.34 -2.11 16 2 C 0.10 1.66 5.60 -4.04 -0.02 1.63 16 3 N -0.59 -12.91 2.46 -176.29 -0.43 -13.34 16 4 C 0.25 6.49 5.22 -5.20 -0.03 6.46 16 5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.56 12.37 7.28 -12.46 -0.09 12.28 16 14 O -0.54 -14.22 16.55 5.29 0.09 -14.13 16 15 C -0.23 -4.06 5.10 -104.82 -0.53 -4.59 16 16 C 0.01 0.20 9.79 -39.29 -0.38 -0.19 16 17 C -0.25 -3.19 8.77 -39.65 -0.35 -3.53 16 18 C 0.41 5.30 7.62 -155.28 -1.18 4.11 16 19 N -0.72 -6.81 5.22 -53.96 -0.28 -7.10 16 20 C 0.14 1.01 2.87 -67.93 -0.19 0.82 16 21 C -0.16 -0.80 9.38 37.16 0.35 -0.45 16 22 C -0.17 -1.16 9.41 37.16 0.35 -0.81 16 23 N -0.55 -7.99 10.38 -12.14 -0.13 -8.12 16 24 C 0.16 2.55 8.59 -17.12 -0.15 2.40 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.79 6.33 -51.93 -0.33 0.46 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.42 8.13 -51.93 -0.42 0.99 16 29 H 0.07 1.11 5.09 -51.93 -0.26 0.84 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.14 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.13 1.36 6.03 -52.49 -0.32 1.04 16 35 H 0.40 3.46 8.72 -40.82 -0.36 3.11 16 36 H 0.08 0.60 6.41 -51.93 -0.33 0.26 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.17 2.45 3.69 -52.49 -0.19 2.25 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -33.84 351.04 -8.40 -42.24 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.34 Total: 1.88 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -2.31 Total: 2.29 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.11 Total: -54.53 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.84 -8.40 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.559 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds