Wall clock time and date at job start Tue Mar 31 2020 06:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46844 * 2 1 4 4 C 1.46499 * 119.99972 * 277.51066 * 3 2 1 5 5 C 1.50698 * 109.47461 * 270.00302 * 4 3 2 6 6 H 1.07999 * 119.99510 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00079 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00145 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99984 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47220 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47175 * 119.99838 * 9 7 5 12 12 H 1.48501 * 109.46824 * 240.00010 * 9 7 5 13 13 C 1.34782 * 119.99996 * 97.51554 * 3 2 1 14 14 O 1.21589 * 119.99579 * 185.70373 * 13 3 2 15 15 C 1.47542 * 119.99973 * 5.71029 * 13 3 2 16 16 C 1.40347 * 120.47802 * 134.57004 * 15 13 3 17 17 C 1.36850 * 118.49555 * 179.97438 * 16 15 13 18 18 C 1.39399 * 119.38009 * 0.02562 * 17 16 15 19 19 N 1.38452 * 119.54030 * 179.97438 * 18 17 16 20 20 C 1.46500 * 120.00232 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.47029 * 154.72709 * 20 19 18 22 22 C 1.53001 * 109.46913 * 274.72488 * 20 19 18 23 23 N 1.32604 * 120.92040 * 0.25275 * 18 17 16 24 24 C 1.31687 * 121.63624 * 359.47454 * 23 18 17 25 25 H 1.09003 * 109.47223 * 189.19592 * 1 2 3 26 26 H 1.09004 * 109.47125 * 309.19019 * 1 2 3 27 27 H 1.08992 * 109.47335 * 69.19088 * 1 2 3 28 28 H 1.08999 * 109.47088 * 239.99962 * 2 1 3 29 29 H 1.09003 * 109.46903 * 119.99930 * 2 1 3 30 30 H 1.09001 * 109.46855 * 30.00524 * 4 3 2 31 31 H 1.08999 * 109.46764 * 150.00144 * 4 3 2 32 32 H 0.96996 * 119.99977 * 179.97438 * 8 7 5 33 33 H 1.08005 * 120.74941 * 359.94969 * 16 15 13 34 34 H 1.07995 * 120.31371 * 180.02562 * 17 16 15 35 35 H 0.97007 * 119.99482 * 179.72336 * 19 18 17 36 36 H 1.09000 * 109.46936 * 34.72195 * 20 19 18 37 37 H 1.09000 * 109.47519 * 60.00473 * 21 20 19 38 38 H 1.09005 * 109.46555 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47259 * 299.99808 * 21 20 19 40 40 H 1.08999 * 109.46897 * 59.99934 * 22 20 19 41 41 H 1.08997 * 109.47366 * 179.97438 * 22 20 19 42 42 H 1.09007 * 109.47161 * 300.00017 * 22 20 19 43 43 H 1.07995 * 119.73836 * 180.26834 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1060 2.1271 -1.2578 5 6 3.4642 1.9134 -1.8750 6 1 4.1892 1.2845 -1.3799 7 6 3.7806 2.5199 -3.0720 8 7 2.8974 3.2853 -3.6751 9 14 5.4639 2.2544 -3.8373 10 1 6.2674 1.3585 -2.9674 11 1 5.3062 1.6333 -5.1769 12 1 6.1563 3.5607 -3.9757 13 6 2.3868 1.9657 1.1572 14 8 2.6930 3.1423 1.1734 15 6 2.4188 1.1778 2.4042 16 6 3.5125 1.2730 3.2786 17 6 3.4997 0.5244 4.4241 18 6 2.4103 -0.3046 4.6872 19 7 2.3941 -1.0638 5.8449 20 6 3.5170 -0.9930 6.7831 21 6 3.0346 -1.3696 8.1853 22 6 4.6121 -1.9662 6.3420 23 7 1.3917 -0.3803 3.8415 24 6 1.3620 0.3268 2.7310 25 1 -0.3634 -1.0145 0.1642 26 1 -0.3633 0.6494 0.7965 27 1 -0.3633 0.3651 -0.9605 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3357 1.7746 -1.9437 31 1 1.9592 3.1892 -1.0614 32 1 3.1202 3.7123 -4.5170 33 1 4.3456 1.9220 3.0522 34 1 4.3258 0.5753 5.1178 35 1 1.6375 -1.6398 6.0365 36 1 3.9161 0.0213 6.7962 37 1 2.6356 -2.3839 8.1721 38 1 3.8701 -1.3165 8.8834 39 1 2.2544 -0.6763 8.4995 40 1 4.9558 -1.6979 5.3430 41 1 5.4479 -1.9133 7.0398 42 1 4.2131 -2.9805 6.3288 43 1 0.5149 0.2447 2.0661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084408602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:51 Heat of formation + Delta-G solvation = -13.726939 kcal Electronic energy + Delta-G solvation = -23244.899010 eV Core-core repulsion = 19903.440556 eV Total energy + Delta-G solvation = -3341.458454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78836 -40.24186 -37.91854 -37.08150 -34.97508 -33.80528 -33.03133 -31.71719 -30.48437 -28.82195 -28.04833 -25.49607 -24.88947 -24.44509 -23.55136 -21.88567 -20.40432 -18.89686 -18.63640 -18.20800 -18.00260 -17.07540 -16.41108 -16.26702 -15.97822 -15.69385 -15.42384 -15.01427 -14.83650 -14.35223 -14.19812 -14.14122 -13.83874 -13.70264 -13.46149 -13.28693 -13.08781 -13.03659 -12.89107 -12.65156 -12.48482 -12.35846 -12.17192 -12.00742 -11.89814 -11.69465 -11.28478 -10.96570 -10.77803 -10.64492 -10.37766 -9.48929 -8.72025 -8.22304 -6.37382 0.01242 0.30683 1.36499 1.38806 1.50861 1.85477 2.08319 2.30654 2.43834 2.87022 3.07007 3.52997 3.65460 3.89688 3.91596 4.00979 4.09184 4.11466 4.20591 4.33427 4.38345 4.53303 4.68676 4.78472 4.80904 4.86884 4.92496 4.94401 4.96425 5.00309 5.05232 5.17678 5.27791 5.29772 5.35554 5.38746 5.46374 5.57222 5.84117 6.01972 6.06382 6.52509 6.68391 6.74842 7.07202 7.25920 7.42547 8.85107 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022970 B = 0.003585 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.682552 B = 7807.682921 C = 8366.023220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.261 3.739 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.280 1.280 13 C 0.553 3.447 14 O -0.598 6.598 15 C -0.258 4.258 16 C 0.003 3.997 17 C -0.235 4.235 18 C 0.414 3.586 19 N -0.703 5.703 20 C 0.137 3.863 21 C -0.154 4.154 22 C -0.168 4.168 23 N -0.555 5.555 24 C 0.176 3.824 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.028 0.972 31 H 0.000 1.000 32 H 0.268 0.732 33 H 0.131 0.869 34 H 0.162 0.838 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -14.611 22.499 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.206 1.206 13 C 0.343 3.657 14 O -0.480 6.480 15 C -0.266 4.266 16 C -0.023 4.023 17 C -0.259 4.259 18 C 0.176 3.824 19 N -0.334 5.334 20 C 0.033 3.967 21 C -0.212 4.212 22 C -0.227 4.227 23 N -0.273 5.273 24 C 0.018 3.982 25 H 0.121 0.879 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.046 0.954 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.149 0.851 34 H 0.180 0.820 35 H 0.246 0.754 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.903 -14.471 22.684 26.922 hybrid contribution 1.115 0.854 -1.208 1.853 sum 0.213 -13.617 21.476 25.430 Atomic orbital electron populations 1.22297 0.94120 1.03930 1.02159 1.21898 0.95658 0.81686 1.03584 1.48172 1.62340 1.14836 1.07044 1.18771 0.96191 0.90950 0.80072 1.21729 1.00254 1.30077 1.06270 0.92980 1.25860 1.01494 0.94368 0.97335 1.70059 1.36572 1.32087 1.17976 0.85345 0.78868 0.78050 0.78405 1.19189 1.19312 1.20612 1.18597 0.76643 0.86365 0.84130 1.90693 1.51845 1.18352 1.87122 1.20524 1.01215 1.06563 0.98305 1.21150 0.95837 0.93989 0.91373 1.21250 1.01713 1.02647 1.00309 1.18769 0.88880 0.87714 0.87039 1.44729 1.23873 1.46209 1.18614 1.21260 0.86018 1.00619 0.88788 1.22027 1.02841 1.02436 0.93885 1.22296 0.98853 0.99697 1.01831 1.67369 1.27200 1.27362 1.05412 1.23333 0.96292 0.86938 0.91648 0.87883 0.92192 0.92776 0.90674 0.89142 0.95408 0.98191 0.92336 0.85083 0.82012 0.75352 0.89616 0.91326 0.89198 0.92101 0.93589 0.89669 0.92084 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 9.15 71.98 0.66 -3.88 16 2 C 0.09 3.20 5.60 86.38 0.48 3.69 16 3 N -0.59 -27.17 2.46 -829.91 -2.04 -29.22 16 4 C 0.26 14.63 5.22 85.63 0.45 15.08 16 5 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 9 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.55 25.81 7.28 86.70 0.63 26.44 16 14 O -0.60 -33.65 16.55 -4.00 -0.07 -33.72 16 15 C -0.26 -9.29 5.10 -19.99 -0.10 -9.40 16 16 C 0.00 0.08 9.79 22.46 0.22 0.30 16 17 C -0.23 -5.63 8.77 22.22 0.19 -5.44 16 18 C 0.41 9.69 7.62 133.25 1.02 10.71 16 19 N -0.70 -11.10 5.22 -324.64 -1.70 -12.79 16 20 C 0.14 1.45 2.87 44.99 0.13 1.58 16 21 C -0.15 -0.98 9.38 71.98 0.68 -0.30 16 22 C -0.17 -1.72 9.41 71.98 0.68 -1.04 16 23 N -0.56 -15.01 10.38 -192.32 -2.00 -17.01 16 24 C 0.18 5.30 8.59 85.03 0.73 6.03 16 25 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 1.60 6.33 -2.38 -0.02 1.59 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 2.63 8.13 -2.39 -0.02 2.62 16 29 H 0.09 2.75 5.09 -2.39 -0.01 2.73 16 30 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 31 H 0.00 0.00 7.35 -2.39 -0.02 -0.02 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.16 2.85 6.03 -2.91 -0.02 2.83 16 35 H 0.41 5.67 8.72 -92.70 -0.81 4.86 16 36 H 0.09 0.92 6.41 -2.39 -0.02 0.90 16 37 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.04 0.64 7.67 -2.39 -0.02 0.62 16 41 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.18 4.93 3.69 -2.91 -0.01 4.92 16 Total: -1.00 -77.09 351.04 3.19 -73.90 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.21 Total: 15.18 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.46 Total: 12.65 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -5.45 Total: -115.65 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.07 Total: -33.72 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -77.09 3.19 -73.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.173 kcal (2) G-P(sol) polarization free energy of solvation -77.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds