Wall clock time and date at job start Tue Mar 31 2020 07:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99652 * 2 1 4 4 C 1.52997 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47266 * 64.99954 * 4 3 2 6 6 C 1.46898 * 111.00269 * 189.99758 * 5 4 3 7 7 C 1.50701 * 109.46769 * 75.46056 * 6 5 4 8 8 H 1.07999 * 120.00360 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99899 * 179.72507 * 7 6 5 10 10 N 1.31516 * 120.00321 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00202 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46983 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47451 * 119.99646 * 11 9 7 14 14 H 1.48498 * 109.47123 * 240.00031 * 11 9 7 15 15 C 1.38542 * 110.99853 * 66.04307 * 5 4 3 16 16 N 1.32866 * 120.44161 * 57.45552 * 15 5 4 17 17 C 1.31758 * 120.49757 * 180.02562 * 16 15 5 18 18 N 1.31600 * 121.74674 * 0.18783 * 17 16 15 19 19 C 1.33118 * 121.28326 * 359.87935 * 18 17 16 20 20 C 1.37307 * 118.93512 * 359.57377 * 19 18 17 21 21 C 1.50327 * 122.87690 * 180.33911 * 20 19 18 22 22 C 1.52830 * 110.52301 * 342.81101 * 21 20 19 23 23 C 1.53310 * 108.45957 * 50.57766 * 22 21 20 24 24 C 1.50460 * 118.46452 * 179.64263 * 19 18 17 25 25 H 1.09004 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47171 * 299.99730 * 1 2 3 27 27 H 1.09003 * 109.47624 * 60.00225 * 1 2 3 28 28 H 1.09001 * 109.47252 * 60.00320 * 3 2 1 29 29 H 1.09002 * 109.47075 * 300.00195 * 3 2 1 30 30 H 1.08997 * 109.47340 * 305.00125 * 4 3 2 31 31 H 1.09002 * 109.47498 * 184.99643 * 4 3 2 32 32 H 1.08998 * 109.47501 * 315.46213 * 6 5 4 33 33 H 1.08996 * 109.47174 * 195.45744 * 6 5 4 34 34 H 0.97001 * 120.00493 * 179.97438 * 10 9 7 35 35 H 1.08000 * 119.12593 * 180.15741 * 17 16 15 36 36 H 1.09000 * 109.45918 * 222.37027 * 21 20 19 37 37 H 1.08997 * 109.08885 * 103.01546 * 21 20 19 38 38 H 1.09003 * 109.64326 * 290.88381 * 22 21 20 39 39 H 1.08999 * 109.64115 * 170.26890 * 22 21 20 40 40 H 1.09000 * 109.63593 * 170.67211 * 23 22 21 41 41 H 1.08998 * 109.79115 * 50.17780 * 23 22 21 42 42 H 1.09000 * 109.30082 * 282.69299 * 24 19 18 43 43 H 1.09005 * 109.30148 * 42.27476 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9768 0.5629 -1.2562 6 6 5.4026 0.2140 -1.1980 7 6 5.5844 -1.0156 -0.3460 8 1 4.7267 -1.4902 0.1073 9 6 6.8452 -1.5377 -0.1494 10 7 7.8892 -0.9631 -0.7058 11 14 7.0707 -3.0624 0.9062 12 1 5.7495 -3.5135 1.4127 13 1 7.6841 -4.1421 0.0918 14 1 7.9575 -2.7432 2.0537 15 6 3.7108 1.3861 -2.3383 16 7 4.2050 2.6185 -2.3842 17 6 3.9523 3.4025 -3.4126 18 7 3.2070 3.0032 -4.4210 19 6 2.6754 1.7830 -4.4470 20 6 2.9221 0.9284 -3.4010 21 6 2.3733 -0.4698 -3.3427 22 6 1.2178 -0.6334 -4.3294 23 6 1.6746 -0.1231 -5.7010 24 6 1.8267 1.3956 -5.6274 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6884 1.8465 -0.8900 30 1 3.8514 0.5684 0.8409 31 1 3.9784 2.1767 0.0889 32 1 5.9621 1.0427 -0.7641 33 1 5.7695 0.0158 -2.2051 34 1 8.7762 -1.3302 -0.5672 35 1 4.3675 4.3994 -3.4281 36 1 2.0179 -0.6787 -2.3337 37 1 3.1655 -1.1745 -3.5955 38 1 0.3605 -0.0524 -3.9893 39 1 0.9447 -1.6861 -4.4026 40 1 0.9300 -0.3804 -6.4542 41 1 2.6315 -0.5746 -5.9628 42 1 0.8419 1.8520 -5.5284 43 1 2.2986 1.7522 -6.5430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094871707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:44 Heat of formation + Delta-G solvation = 0.065972 kcal Electronic energy + Delta-G solvation = -24543.986026 eV Core-core repulsion = 21203.125677 eV Total energy + Delta-G solvation = -3340.860349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05283 -37.97721 -36.96091 -36.32151 -33.02244 -32.21384 -31.04374 -29.76771 -29.33854 -26.70763 -25.88550 -24.20146 -23.64154 -22.51542 -22.35905 -20.57490 -19.49171 -17.48586 -16.85567 -16.16656 -15.93512 -15.79514 -15.25396 -14.73092 -14.67741 -14.33846 -13.93907 -13.78034 -13.75234 -13.43910 -13.07550 -12.78374 -12.50379 -12.16882 -11.99550 -11.91056 -11.44060 -11.34609 -11.15017 -10.87768 -10.77100 -10.70631 -10.61690 -10.42423 -10.14974 -10.11782 -9.70569 -9.38448 -9.34494 -8.80095 -8.57807 -8.47037 -7.67762 -6.04051 -4.06078 1.37764 1.43291 3.31661 3.39139 3.44993 4.07163 4.10632 4.24157 4.29754 4.49431 4.66042 4.95028 4.98619 5.02970 5.18924 5.30786 5.31793 5.37417 5.47698 5.54879 5.58223 5.62568 5.68620 5.72319 5.77269 5.79332 5.87612 5.93161 6.07157 6.15414 6.20578 6.29887 6.49201 6.53226 6.65475 6.82956 7.12284 7.25918 7.43127 7.48764 7.77219 7.92500 8.06746 8.45069 8.53249 9.02687 9.58036 11.06615 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.005813 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.116482 B = 4815.478354 C = 5249.898106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.069 3.931 4 C 0.067 3.933 5 N -0.478 5.478 6 C 0.207 3.793 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.900 3.100 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.364 3.636 16 N -0.552 5.552 17 C 0.291 3.709 18 N -0.540 5.540 19 C 0.163 3.837 20 C -0.150 4.150 21 C -0.066 4.066 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.065 4.065 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.009 0.991 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.186 0.814 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 4.206 -5.490 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.009 4.009 4 C -0.061 4.061 5 N -0.202 5.202 6 C 0.084 3.916 7 C -0.544 4.544 8 H 0.089 0.911 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.727 3.273 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.125 3.875 16 N -0.270 5.270 17 C 0.001 3.999 18 N -0.255 5.255 19 C 0.020 3.980 20 C -0.155 4.155 21 C -0.104 4.104 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.103 4.103 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.203 0.797 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.669 4.492 -5.563 16.319 hybrid contribution 0.394 -0.414 0.650 0.866 sum -14.275 4.077 -4.913 15.638 Atomic orbital electron populations 1.22688 0.82669 1.02267 0.99076 1.88089 1.17976 1.27138 1.95001 1.22601 0.94786 0.84808 0.98657 1.22102 0.91464 0.99067 0.93442 1.60345 1.24358 1.35877 0.99580 1.19759 0.77737 0.96340 0.97777 1.21174 0.93013 1.10411 1.29826 0.91124 1.24989 0.95806 0.97550 0.96208 1.69984 0.98815 1.40586 1.44346 0.86410 0.78237 0.82657 0.79964 1.19438 1.21081 1.21128 1.20694 0.87587 0.86961 0.92216 1.68679 1.23008 1.06858 1.28427 1.24520 0.91568 0.99073 0.84775 1.68284 1.12132 1.16978 1.28135 1.21128 0.93752 0.88809 0.94297 1.20939 1.00445 0.99290 0.94870 1.20238 0.97258 0.91312 1.01608 1.21616 0.98174 1.01177 0.94754 1.21607 1.02080 0.94299 0.97902 1.20309 0.98522 0.96586 0.94841 0.89884 0.94861 0.94850 0.93528 0.94908 0.88050 0.92490 0.97316 0.95654 0.92924 0.79728 0.88000 0.90147 0.92195 0.91205 0.91178 0.91310 0.89942 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.36 -6.07 9.74 -35.23 -0.34 -6.41 16 3 C 0.07 1.12 6.01 37.16 0.22 1.34 16 4 C 0.07 1.30 5.10 -3.82 -0.02 1.28 16 5 N -0.48 -10.36 3.47 -174.29 -0.60 -10.97 16 6 C 0.21 5.42 4.61 -4.98 -0.02 5.40 16 7 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 8 H 0.07 1.95 7.76 -52.49 -0.41 1.54 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 11 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.36 7.33 3.99 -154.73 -0.62 6.72 16 16 N -0.55 -10.92 9.71 -13.78 -0.13 -11.05 16 17 C 0.29 4.96 12.28 -92.35 -1.13 3.82 16 18 N -0.54 -9.07 10.31 -11.07 -0.11 -9.18 16 19 C 0.16 2.62 6.62 -82.49 -0.55 2.07 16 20 C -0.15 -2.65 5.75 -104.47 -0.60 -3.25 16 21 C -0.07 -1.05 5.32 -28.15 -0.15 -1.20 16 22 C -0.12 -1.42 5.98 -26.66 -0.16 -1.57 16 23 C -0.12 -1.31 5.97 -26.67 -0.16 -1.47 16 24 C -0.06 -0.78 5.95 -28.10 -0.17 -0.95 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.55 7.25 -51.93 -0.38 0.17 16 30 H 0.10 2.11 7.39 -51.93 -0.38 1.72 16 31 H 0.06 1.11 7.64 -51.93 -0.40 0.72 16 32 H 0.01 0.25 8.00 -51.93 -0.42 -0.16 16 33 H 0.03 0.73 7.92 -51.93 -0.41 0.32 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.10 1.77 6.86 -51.93 -0.36 1.41 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -31.36 348.67 -9.81 -41.17 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.95 Total: -0.23 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.63 Total: 0.85 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.12 Total: -57.15 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.34 Total: -6.41 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.36 -9.81 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094871707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.234 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds