Wall clock time and date at job start Tue Mar 31 2020 07:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99652 * 2 1 4 4 C 1.52997 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47266 * 64.99954 * 4 3 2 6 6 C 1.46898 * 111.00269 * 189.99758 * 5 4 3 7 7 C 1.50701 * 109.46769 * 75.46056 * 6 5 4 8 8 H 1.07999 * 120.00360 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99899 * 179.72507 * 7 6 5 10 10 N 1.31516 * 120.00321 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00202 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46983 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47451 * 119.99646 * 11 9 7 14 14 H 1.48498 * 109.47123 * 240.00031 * 11 9 7 15 15 C 1.38542 * 110.99853 * 66.04307 * 5 4 3 16 16 N 1.32866 * 120.44161 * 57.45552 * 15 5 4 17 17 C 1.31758 * 120.49757 * 180.02562 * 16 15 5 18 18 N 1.31600 * 121.74674 * 0.18783 * 17 16 15 19 19 C 1.33118 * 121.28326 * 359.87935 * 18 17 16 20 20 C 1.37307 * 118.93512 * 359.57377 * 19 18 17 21 21 C 1.50327 * 122.87690 * 180.33911 * 20 19 18 22 22 C 1.52830 * 110.52301 * 342.81101 * 21 20 19 23 23 C 1.53310 * 108.45957 * 50.57766 * 22 21 20 24 24 C 1.50460 * 118.46452 * 179.64263 * 19 18 17 25 25 H 1.09004 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47171 * 299.99730 * 1 2 3 27 27 H 1.09003 * 109.47624 * 60.00225 * 1 2 3 28 28 H 1.09001 * 109.47252 * 60.00320 * 3 2 1 29 29 H 1.09002 * 109.47075 * 300.00195 * 3 2 1 30 30 H 1.08997 * 109.47340 * 305.00125 * 4 3 2 31 31 H 1.09002 * 109.47498 * 184.99643 * 4 3 2 32 32 H 1.08998 * 109.47501 * 315.46213 * 6 5 4 33 33 H 1.08996 * 109.47174 * 195.45744 * 6 5 4 34 34 H 0.97001 * 120.00493 * 179.97438 * 10 9 7 35 35 H 1.08000 * 119.12593 * 180.15741 * 17 16 15 36 36 H 1.09000 * 109.45918 * 222.37027 * 21 20 19 37 37 H 1.08997 * 109.08885 * 103.01546 * 21 20 19 38 38 H 1.09003 * 109.64326 * 290.88381 * 22 21 20 39 39 H 1.08999 * 109.64115 * 170.26890 * 22 21 20 40 40 H 1.09000 * 109.63593 * 170.67211 * 23 22 21 41 41 H 1.08998 * 109.79115 * 50.17780 * 23 22 21 42 42 H 1.09000 * 109.30082 * 282.69299 * 24 19 18 43 43 H 1.09005 * 109.30148 * 42.27476 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9768 0.5629 -1.2562 6 6 5.4026 0.2140 -1.1980 7 6 5.5844 -1.0156 -0.3460 8 1 4.7267 -1.4902 0.1073 9 6 6.8452 -1.5377 -0.1494 10 7 7.8892 -0.9631 -0.7058 11 14 7.0707 -3.0624 0.9062 12 1 5.7495 -3.5135 1.4127 13 1 7.6841 -4.1421 0.0918 14 1 7.9575 -2.7432 2.0537 15 6 3.7108 1.3861 -2.3383 16 7 4.2050 2.6185 -2.3842 17 6 3.9523 3.4025 -3.4126 18 7 3.2070 3.0032 -4.4210 19 6 2.6754 1.7830 -4.4470 20 6 2.9221 0.9284 -3.4010 21 6 2.3733 -0.4698 -3.3427 22 6 1.2178 -0.6334 -4.3294 23 6 1.6746 -0.1231 -5.7010 24 6 1.8267 1.3956 -5.6274 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6884 1.8465 -0.8900 30 1 3.8514 0.5684 0.8409 31 1 3.9784 2.1767 0.0889 32 1 5.9621 1.0427 -0.7641 33 1 5.7695 0.0158 -2.2051 34 1 8.7762 -1.3302 -0.5672 35 1 4.3675 4.3994 -3.4281 36 1 2.0179 -0.6787 -2.3337 37 1 3.1655 -1.1745 -3.5955 38 1 0.3605 -0.0524 -3.9893 39 1 0.9447 -1.6861 -4.4026 40 1 0.9300 -0.3804 -6.4542 41 1 2.6315 -0.5746 -5.9628 42 1 0.8419 1.8520 -5.5284 43 1 2.2986 1.7522 -6.5430 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094871707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:43 Heat of formation + Delta-G solvation = -18.958804 kcal Electronic energy + Delta-G solvation = -24544.811002 eV Core-core repulsion = 21203.125677 eV Total energy + Delta-G solvation = -3341.685325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.43986 -39.37900 -38.17560 -37.68967 -34.98426 -33.80831 -32.26140 -31.13753 -30.79339 -28.53532 -27.03314 -25.54094 -24.91823 -24.25939 -23.81717 -21.99157 -20.67697 -18.96984 -18.57052 -17.80916 -17.43811 -17.16093 -16.45264 -16.38608 -16.02971 -15.71652 -15.26976 -15.20228 -15.00915 -14.65533 -14.46691 -14.20606 -13.94535 -13.76743 -13.56290 -13.06185 -12.95147 -12.76528 -12.64596 -12.47747 -12.44066 -12.11988 -11.92996 -11.75535 -11.65231 -11.52203 -11.29063 -11.04540 -10.66619 -10.56951 -10.21463 -9.97527 -9.46042 -8.23122 -6.34197 -0.05958 0.06249 1.41552 1.41762 1.56899 2.37664 2.70072 2.74248 2.95415 3.09937 3.10500 3.32782 3.70495 3.91205 3.92673 4.06065 4.08634 4.16418 4.30990 4.40806 4.47710 4.55388 4.57220 4.62661 4.65447 4.67380 4.81209 4.86340 4.89339 4.96437 5.01118 5.06217 5.08467 5.19958 5.26415 5.40470 5.47408 5.55956 5.66248 5.96575 5.97160 6.10226 6.33060 6.56065 6.80650 7.13553 7.35488 8.88541 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.005813 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.116482 B = 4815.478354 C = 5249.898106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.085 3.915 4 C 0.066 3.934 5 N -0.475 5.475 6 C 0.232 3.768 7 C -0.516 4.516 8 H 0.069 0.931 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.974 3.026 12 H -0.260 1.260 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.334 3.666 16 N -0.581 5.581 17 C 0.286 3.714 18 N -0.539 5.539 19 C 0.167 3.833 20 C -0.160 4.160 21 C -0.062 4.062 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.063 4.063 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.081 0.919 31 H 0.049 0.951 32 H -0.027 1.027 33 H -0.013 1.013 34 H 0.265 0.735 35 H 0.217 0.783 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.107 0.893 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.730 3.697 -6.338 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C 0.008 3.992 4 C -0.061 4.061 5 N -0.198 5.198 6 C 0.108 3.892 7 C -0.554 4.554 8 H 0.087 0.913 9 C -0.195 4.195 10 N -0.577 5.577 11 Si 0.798 3.202 12 H -0.184 1.184 13 H -0.204 1.204 14 H -0.203 1.203 15 C 0.097 3.903 16 N -0.299 5.299 17 C -0.003 4.003 18 N -0.254 5.254 19 C 0.024 3.976 20 C -0.165 4.165 21 C -0.100 4.100 22 C -0.149 4.149 23 C -0.154 4.154 24 C -0.101 4.101 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.067 0.933 32 H -0.009 1.009 33 H 0.005 0.995 34 H 0.074 0.926 35 H 0.233 0.767 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.320 3.993 -6.409 18.895 hybrid contribution 1.173 -0.169 0.851 1.459 sum -16.147 3.824 -5.558 17.500 Atomic orbital electron populations 1.22905 0.80124 1.03685 1.00343 1.88039 1.20764 1.27104 1.95245 1.22359 0.92018 0.85175 0.99658 1.22090 0.94289 0.97855 0.91871 1.60205 1.20990 1.37469 1.01163 1.19211 0.80416 0.94806 0.94804 1.21394 0.93229 1.10830 1.29996 0.91272 1.25945 0.95314 1.00883 0.97393 1.70120 0.99419 1.42391 1.45760 0.85266 0.78542 0.78324 0.78090 1.18407 1.20395 1.20347 1.20802 0.89388 0.87420 0.92687 1.68608 1.24075 1.07226 1.29999 1.25150 0.91240 0.99876 0.84077 1.68429 1.11993 1.17287 1.27675 1.21874 0.92953 0.88003 0.94804 1.21182 1.00377 1.00401 0.94570 1.20194 0.98074 0.89635 1.02093 1.21595 0.96508 1.02696 0.94063 1.21624 1.02567 0.93120 0.98073 1.20503 0.98794 0.97674 0.93085 0.88476 0.93169 0.93890 0.90883 0.95210 0.90032 0.93303 1.00940 0.99513 0.92636 0.76692 0.89778 0.92644 0.90847 0.89503 0.87505 0.92610 0.87474 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.39 -12.90 9.74 -148.98 -1.45 -14.35 16 3 C 0.09 2.77 6.01 71.98 0.43 3.20 16 4 C 0.07 2.71 5.10 86.30 0.44 3.15 16 5 N -0.47 -21.81 3.47 -705.34 -2.45 -24.26 16 6 C 0.23 13.06 4.61 85.56 0.39 13.45 16 7 C -0.52 -29.87 8.56 25.60 0.22 -29.65 16 8 H 0.07 3.95 7.76 -2.91 -0.02 3.92 16 9 C 0.00 0.15 5.46 84.65 0.46 0.61 16 10 N -0.94 -57.73 13.29 21.45 0.28 -57.44 16 11 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 15 C 0.33 14.04 3.99 133.30 0.53 14.57 16 16 N -0.58 -23.83 9.71 -197.51 -1.92 -25.75 16 17 C 0.29 9.72 12.28 180.95 2.22 11.94 16 18 N -0.54 -17.45 10.31 -188.94 -1.95 -19.39 16 19 C 0.17 5.16 6.62 42.07 0.28 5.44 16 20 C -0.16 -5.71 5.75 -19.77 -0.11 -5.82 16 21 C -0.06 -1.97 5.32 29.67 0.16 -1.82 16 22 C -0.11 -2.35 5.98 30.64 0.18 -2.16 16 23 C -0.12 -2.13 5.97 30.63 0.18 -1.95 16 24 C -0.06 -1.31 5.95 29.71 0.18 -1.14 16 25 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.03 0.98 7.25 -2.39 -0.02 0.97 16 30 H 0.08 3.60 7.39 -2.39 -0.02 3.58 16 31 H 0.05 2.04 7.64 -2.39 -0.02 2.02 16 32 H -0.03 -1.68 8.00 -2.39 -0.02 -1.70 16 33 H -0.01 -0.83 7.92 -2.39 -0.02 -0.85 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.22 5.63 8.06 -2.91 -0.02 5.60 16 36 H 0.08 2.97 6.86 -2.39 -0.02 2.96 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 1.38 8.10 -2.39 -0.02 1.37 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -71.79 348.67 2.35 -69.44 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.98 Total: 13.16 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.82 Total: 11.64 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -6.03 Total: -126.84 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -1.45 Total: -14.35 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.79 2.35 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094871707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.482 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds