Wall clock time and date at job start Tue Mar 31 2020 07:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34953 * 126.03456 * 2 1 4 4 C 1.35310 * 107.74630 * 180.14310 * 3 2 1 5 5 C 1.50698 * 126.04332 * 179.87311 * 4 3 2 6 6 C 1.53006 * 109.47184 * 269.72103 * 5 4 3 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99735 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47527 * 89.99956 * 10 9 7 12 12 H 1.08009 * 119.99486 * 359.97438 * 11 10 9 13 13 C 1.37868 * 120.00223 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00106 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00029 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47346 * 59.99815 * 15 13 11 17 17 H 1.48503 * 109.47098 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46814 * 299.99771 * 15 13 11 19 19 C 1.46497 * 119.99801 * 359.97438 * 9 7 6 20 20 C 1.53005 * 109.46961 * 90.00424 * 19 9 7 21 21 C 1.52997 * 117.49990 * 243.61950 * 20 19 9 22 22 C 1.53003 * 117.49772 * 174.99561 * 20 19 9 23 23 C 1.39874 * 107.92117 * 359.61472 * 4 3 2 24 24 N 1.30837 * 108.20178 * 0.23732 * 23 4 3 25 25 H 1.08995 * 109.47479 * 270.26044 * 1 2 3 26 26 H 1.08996 * 109.47176 * 30.26347 * 1 2 3 27 27 H 1.09000 * 109.46865 * 150.25870 * 1 2 3 28 28 H 1.08002 * 126.12775 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47612 * 149.72158 * 5 4 3 30 30 H 1.09001 * 109.47122 * 29.71989 * 5 4 3 31 31 H 1.09001 * 109.47002 * 299.99404 * 6 5 4 32 32 H 1.08993 * 109.46955 * 59.99842 * 6 5 4 33 33 H 1.09004 * 109.46561 * 209.99850 * 10 9 7 34 34 H 1.08998 * 109.47073 * 329.99510 * 10 9 7 35 35 H 0.97000 * 119.99819 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47065 * 210.00008 * 19 9 7 37 37 H 1.08990 * 109.47304 * 330.00300 * 19 9 7 38 38 H 1.09003 * 115.54970 * 29.32752 * 20 19 9 39 39 H 1.09001 * 117.49678 * 0.02562 * 21 20 19 40 40 H 1.08994 * 117.49873 * 145.01962 * 21 20 19 41 41 H 1.09001 * 117.49798 * 214.97766 * 22 20 19 42 42 H 1.09000 * 117.49463 * 0.02562 * 22 20 19 43 43 H 1.08003 * 125.89914 * 180.26334 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5436 0.6667 -0.0032 5 6 4.7679 1.5454 -0.0071 6 6 5.1824 1.8362 -1.4509 7 6 6.4071 2.7144 -1.4548 8 8 6.8996 3.0729 -0.4061 9 7 6.9544 3.1023 -2.6237 10 6 8.1447 3.9565 -2.6274 11 6 9.3813 3.0953 -2.6238 12 1 9.2897 2.0191 -2.6188 13 6 10.6293 3.6810 -2.6269 14 7 10.7408 4.9914 -2.6335 15 14 12.1622 2.6132 -2.6217 16 1 12.1681 1.7498 -3.8298 17 1 13.3686 3.4792 -2.6268 18 1 12.1683 1.7621 -1.4048 19 6 6.3592 2.6698 -3.8905 20 6 5.3110 3.6912 -4.3365 21 6 3.8578 3.2205 -4.4227 22 6 4.6551 3.4799 -5.7026 23 6 3.5347 -0.7320 0.0037 24 7 2.2892 -1.1327 0.0057 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8876 -0.5179 27 1 -0.3633 -0.8923 -0.5098 28 1 1.9280 2.1194 -0.0004 29 1 5.5820 1.0367 0.5092 30 1 4.5440 2.4827 0.5024 31 1 5.4064 0.8990 -1.9604 32 1 4.3684 2.3450 -1.9672 33 1 8.1401 4.5820 -3.5202 34 1 8.1402 4.5897 -1.7402 35 1 11.6189 5.4034 -2.6361 36 1 7.1373 2.5925 -4.6499 37 1 5.8851 1.6977 -3.7560 38 1 5.4896 4.7181 -4.0174 39 1 3.6484 2.1832 -4.1613 40 1 3.0801 3.9376 -4.1602 41 1 4.4018 4.3677 -6.2820 42 1 4.9701 2.6129 -6.2833 43 1 4.4055 -1.3708 0.0073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:10 Heat of formation + Delta-G solvation = 60.440860 kcal Electronic energy + Delta-G solvation = -23053.807875 eV Core-core repulsion = 19715.565578 eV Total energy + Delta-G solvation = -3338.242297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23728 -39.14189 -37.14580 -34.57028 -34.05147 -32.64402 -32.34121 -29.56713 -27.90755 -26.92870 -25.92618 -24.00048 -22.28126 -22.12163 -21.14455 -20.62045 -20.04641 -18.22987 -17.01044 -16.42409 -16.29733 -15.57606 -15.25466 -15.11518 -14.77507 -14.44771 -14.19544 -14.04726 -13.43585 -13.08704 -13.05433 -12.78205 -12.54113 -12.33716 -12.07697 -11.92666 -11.60185 -11.42731 -11.33184 -11.13903 -10.88530 -10.85970 -10.56068 -10.42551 -10.29344 -10.04788 -9.77933 -9.58070 -9.48828 -8.83781 -8.39074 -8.32278 -7.60116 -5.99976 -4.04428 1.81089 2.42834 2.76696 3.34990 3.39199 3.41904 3.54806 3.85565 4.10198 4.37924 4.49118 4.76839 4.87497 4.89741 5.00848 5.05512 5.07490 5.12515 5.29969 5.34175 5.38000 5.52253 5.54147 5.62224 5.69589 5.74680 5.90005 5.92586 5.97345 6.02670 6.14315 6.19655 6.40991 6.47316 6.50738 6.64553 6.93231 7.13797 7.50393 7.62036 7.62804 7.97029 8.29037 8.51422 8.95691 9.19638 9.60725 11.08062 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.003856 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.063149 B = 7259.129327 C = 8328.257395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.382 5.382 3 C 0.052 3.948 4 C -0.225 4.225 5 C -0.026 4.026 6 C -0.134 4.134 7 C 0.506 3.494 8 O -0.543 6.543 9 N -0.597 5.597 10 C 0.246 3.754 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.143 3.857 20 C -0.163 4.163 21 C -0.185 4.185 22 C -0.178 4.178 23 C 0.053 3.947 24 N -0.303 5.303 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.172 0.828 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.625 -6.788 -0.927 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.165 5.165 3 C -0.093 4.093 4 C -0.236 4.236 5 C -0.065 4.065 6 C -0.174 4.174 7 C 0.293 3.707 8 O -0.421 6.421 9 N -0.328 5.328 10 C 0.127 3.873 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.019 3.981 20 C -0.182 4.182 21 C -0.222 4.222 22 C -0.215 4.215 23 C -0.133 4.133 24 N -0.124 5.124 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.189 0.811 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -21.162 -7.437 -0.368 22.434 hybrid contribution 1.336 0.244 -0.210 1.374 sum -19.826 -7.193 -0.579 21.098 Atomic orbital electron populations 1.21796 0.74565 1.04297 1.03123 1.48421 1.06430 1.03963 1.57668 1.22347 0.90939 0.93240 1.02801 1.20235 0.94656 0.94017 1.14711 1.19618 0.93167 0.98172 0.95508 1.21731 0.96964 1.00062 0.98635 1.20436 0.84939 0.81337 0.84011 1.90661 1.63603 1.56737 1.31123 1.48194 1.29651 1.50886 1.04055 1.19245 0.80207 0.89586 0.98243 1.21414 0.90743 0.93324 1.50916 0.92537 1.24927 0.99016 0.95003 0.95142 1.69926 1.24166 1.08850 1.50556 0.86579 0.82113 0.80219 0.78623 1.20288 1.21240 1.20157 1.20988 0.94846 0.94744 0.87564 1.22942 0.93705 1.01622 0.99951 1.23026 0.94789 1.01904 1.02443 1.22897 1.04626 1.03217 0.90788 1.23866 0.95059 0.94836 0.99538 1.77320 1.01815 1.08324 1.24971 0.91019 0.89605 0.89505 0.81066 0.90414 0.90845 0.89875 0.89616 0.95147 0.93961 0.92731 0.89672 0.91410 0.87451 0.88947 0.89329 0.89066 0.88804 0.80042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.47 59.85 0.69 1.32 16 2 N -0.38 -4.07 4.01 -68.17 -0.27 -4.34 16 3 C 0.05 0.55 11.40 -17.22 -0.20 0.35 16 4 C -0.22 -2.76 5.35 -105.05 -0.56 -3.32 16 5 C -0.03 -0.36 4.99 -27.88 -0.14 -0.50 16 6 C -0.13 -1.96 4.23 -27.88 -0.12 -2.08 16 7 C 0.51 10.36 7.67 -10.99 -0.08 10.27 16 8 O -0.54 -13.53 15.56 5.56 0.09 -13.45 16 9 N -0.60 -12.50 2.46 -175.06 -0.43 -12.93 16 10 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 11 C -0.53 -14.94 9.38 -34.44 -0.32 -15.26 16 12 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 15 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.14 2.32 5.49 -4.04 -0.02 2.30 16 20 C -0.16 -2.26 5.95 -90.62 -0.54 -2.80 16 21 C -0.18 -2.04 9.18 -26.73 -0.25 -2.28 16 22 C -0.18 -2.00 10.25 -26.73 -0.27 -2.28 16 23 C 0.05 0.66 11.96 -17.36 -0.21 0.45 16 24 N -0.30 -3.95 12.58 30.63 0.39 -3.56 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 29 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.08 1.14 7.40 -51.93 -0.38 0.75 16 32 H 0.09 1.11 6.84 -51.93 -0.36 0.76 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 37 H 0.07 0.95 6.17 -51.93 -0.32 0.62 16 38 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.09 0.96 7.87 -51.93 -0.41 0.55 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.18 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -34.92 363.99 -8.06 -42.99 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.88 Total: 0.64 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.15 Total: -5.76 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.42 Total: -46.87 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.92 -8.06 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.427 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds