Wall clock time and date at job start Tue Mar 31 2020 07:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34953 * 126.03456 * 2 1 4 4 C 1.35310 * 107.74630 * 180.14310 * 3 2 1 5 5 C 1.50698 * 126.04332 * 179.87311 * 4 3 2 6 6 C 1.53006 * 109.47184 * 269.72103 * 5 4 3 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00025 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00035 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99735 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47527 * 89.99956 * 10 9 7 12 12 H 1.08009 * 119.99486 * 359.97438 * 11 10 9 13 13 C 1.37868 * 120.00223 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00106 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00029 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47346 * 59.99815 * 15 13 11 17 17 H 1.48503 * 109.47098 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46814 * 299.99771 * 15 13 11 19 19 C 1.46497 * 119.99801 * 359.97438 * 9 7 6 20 20 C 1.53005 * 109.46961 * 90.00424 * 19 9 7 21 21 C 1.52997 * 117.49990 * 243.61950 * 20 19 9 22 22 C 1.53003 * 117.49772 * 174.99561 * 20 19 9 23 23 C 1.39874 * 107.92117 * 359.61472 * 4 3 2 24 24 N 1.30837 * 108.20178 * 0.23732 * 23 4 3 25 25 H 1.08995 * 109.47479 * 270.26044 * 1 2 3 26 26 H 1.08996 * 109.47176 * 30.26347 * 1 2 3 27 27 H 1.09000 * 109.46865 * 150.25870 * 1 2 3 28 28 H 1.08002 * 126.12775 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47612 * 149.72158 * 5 4 3 30 30 H 1.09001 * 109.47122 * 29.71989 * 5 4 3 31 31 H 1.09001 * 109.47002 * 299.99404 * 6 5 4 32 32 H 1.08993 * 109.46955 * 59.99842 * 6 5 4 33 33 H 1.09004 * 109.46561 * 209.99850 * 10 9 7 34 34 H 1.08998 * 109.47073 * 329.99510 * 10 9 7 35 35 H 0.97000 * 119.99819 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.47065 * 210.00008 * 19 9 7 37 37 H 1.08990 * 109.47304 * 330.00300 * 19 9 7 38 38 H 1.09003 * 115.54970 * 29.32752 * 20 19 9 39 39 H 1.09001 * 117.49678 * 0.02562 * 21 20 19 40 40 H 1.08994 * 117.49873 * 145.01962 * 21 20 19 41 41 H 1.09001 * 117.49798 * 214.97766 * 22 20 19 42 42 H 1.09000 * 117.49463 * 0.02562 * 22 20 19 43 43 H 1.08003 * 125.89914 * 180.26334 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5436 0.6667 -0.0032 5 6 4.7679 1.5454 -0.0071 6 6 5.1824 1.8362 -1.4509 7 6 6.4071 2.7144 -1.4548 8 8 6.8996 3.0729 -0.4061 9 7 6.9544 3.1023 -2.6237 10 6 8.1447 3.9565 -2.6274 11 6 9.3813 3.0953 -2.6238 12 1 9.2897 2.0191 -2.6188 13 6 10.6293 3.6810 -2.6269 14 7 10.7408 4.9914 -2.6335 15 14 12.1622 2.6132 -2.6217 16 1 12.1681 1.7498 -3.8298 17 1 13.3686 3.4792 -2.6268 18 1 12.1683 1.7621 -1.4048 19 6 6.3592 2.6698 -3.8905 20 6 5.3110 3.6912 -4.3365 21 6 3.8578 3.2205 -4.4227 22 6 4.6551 3.4799 -5.7026 23 6 3.5347 -0.7320 0.0037 24 7 2.2892 -1.1327 0.0057 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8876 -0.5179 27 1 -0.3633 -0.8923 -0.5098 28 1 1.9280 2.1194 -0.0004 29 1 5.5820 1.0367 0.5092 30 1 4.5440 2.4827 0.5024 31 1 5.4064 0.8990 -1.9604 32 1 4.3684 2.3450 -1.9672 33 1 8.1401 4.5820 -3.5202 34 1 8.1402 4.5897 -1.7402 35 1 11.6189 5.4034 -2.6361 36 1 7.1373 2.5925 -4.6499 37 1 5.8851 1.6977 -3.7560 38 1 5.4896 4.7181 -4.0174 39 1 3.6484 2.1832 -4.1613 40 1 3.0801 3.9376 -4.1602 41 1 4.4018 4.3677 -6.2820 42 1 4.9701 2.6129 -6.2833 43 1 4.4055 -1.3708 0.0073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:10 Heat of formation + Delta-G solvation = 39.147469 kcal Electronic energy + Delta-G solvation = -23054.731226 eV Core-core repulsion = 19715.565578 eV Total energy + Delta-G solvation = -3339.165648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.08278 -40.72189 -38.33638 -36.17512 -35.17290 -34.54264 -33.41266 -30.73036 -29.54809 -27.91017 -27.31845 -25.51557 -23.77555 -23.14397 -21.93983 -21.78435 -20.96945 -19.78279 -18.58066 -18.14780 -17.37260 -17.11096 -16.54688 -16.30217 -16.02067 -15.87074 -15.30264 -15.09707 -14.56866 -14.49450 -14.08263 -13.90285 -13.73076 -13.55382 -13.44661 -13.29336 -12.97426 -12.82888 -12.71207 -12.52750 -12.43096 -12.26440 -12.18285 -11.99043 -11.71345 -11.40612 -11.21332 -10.86222 -10.62228 -10.45611 -10.30116 -9.38600 -9.23677 -8.20188 -6.35150 0.99989 1.37479 1.41981 1.49163 1.75999 1.84434 1.93044 2.34131 2.50336 3.00503 3.08995 3.64950 3.82218 3.95174 4.05679 4.08009 4.19141 4.29113 4.34001 4.36144 4.43230 4.49570 4.63549 4.74479 4.77195 4.80039 4.81835 4.86799 4.90560 4.98357 5.08091 5.09782 5.26757 5.33434 5.35432 5.36384 5.41425 5.59896 5.74415 5.89573 6.09609 6.20962 6.72785 6.78358 6.86963 7.31196 7.56796 8.86643 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.003856 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.063149 B = 7259.129327 C = 8328.257395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.380 5.380 3 C 0.065 3.935 4 C -0.245 4.245 5 C -0.015 4.015 6 C -0.113 4.113 7 C 0.496 3.504 8 O -0.599 6.599 9 N -0.602 5.602 10 C 0.264 3.736 11 C -0.543 4.543 12 H 0.054 0.946 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.967 3.033 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.277 1.277 19 C 0.143 3.857 20 C -0.191 4.191 21 C -0.161 4.161 22 C -0.165 4.165 23 C 0.043 3.957 24 N -0.333 5.333 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.203 0.797 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.018 0.982 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.895 -8.292 -2.110 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.163 5.163 3 C -0.081 4.081 4 C -0.256 4.256 5 C -0.054 4.054 6 C -0.153 4.153 7 C 0.286 3.714 8 O -0.480 6.480 9 N -0.332 5.332 10 C 0.142 3.858 11 C -0.582 4.582 12 H 0.072 0.928 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.791 3.209 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.202 1.202 19 C 0.021 3.979 20 C -0.211 4.211 21 C -0.198 4.198 22 C -0.202 4.202 23 C -0.142 4.142 24 N -0.155 5.155 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.220 0.780 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.036 0.964 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -23.487 -8.974 -1.593 25.194 hybrid contribution 1.947 0.769 0.164 2.100 sum -21.540 -8.205 -1.428 23.095 Atomic orbital electron populations 1.22180 0.72046 1.05963 1.04460 1.48794 1.07875 1.03317 1.56277 1.22784 0.90317 0.94495 1.00549 1.20033 0.94622 0.93693 1.17255 1.19404 0.93527 0.97933 0.94522 1.21677 0.94334 0.99380 0.99898 1.21526 0.86039 0.81057 0.82799 1.90627 1.65532 1.58847 1.33015 1.48197 1.28439 1.50106 1.06421 1.18655 0.82263 0.89595 0.95257 1.21708 0.91981 0.93354 1.51115 0.92817 1.25865 1.02476 0.96376 0.94458 1.70053 1.25140 1.10622 1.51120 0.85481 0.77899 0.78494 0.79024 1.18462 1.20375 1.20222 1.21188 0.95052 0.96837 0.84860 1.22645 0.95450 0.99679 1.03323 1.23140 0.92558 1.02985 1.01085 1.23014 1.03045 1.04035 0.90129 1.24077 0.95422 0.95193 0.99478 1.77275 1.02243 1.09864 1.26161 0.89849 0.86663 0.89178 0.78001 0.92485 0.91699 0.88073 0.86990 0.96437 0.98639 0.92448 0.91230 0.88373 0.90103 0.87299 0.87988 0.88191 0.87607 0.79260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.47 127.77 1.47 2.28 16 2 N -0.38 -6.99 4.01 -369.58 -1.48 -8.48 16 3 C 0.07 1.18 11.40 83.54 0.95 2.13 16 4 C -0.24 -5.56 5.35 -20.14 -0.11 -5.67 16 5 C -0.01 -0.40 4.99 29.85 0.15 -0.25 16 6 C -0.11 -3.17 4.23 29.85 0.13 -3.04 16 7 C 0.50 20.79 7.67 87.66 0.67 21.46 16 8 O -0.60 -31.36 15.56 -3.04 -0.05 -31.41 16 9 N -0.60 -25.97 2.46 -826.16 -2.03 -28.00 16 10 C 0.26 14.59 5.16 85.63 0.44 15.04 16 11 C -0.54 -31.96 9.38 25.60 0.24 -31.72 16 12 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 13 C 0.01 0.41 5.46 84.65 0.46 0.88 16 14 N -0.93 -57.28 13.29 21.44 0.28 -57.00 16 15 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 C 0.14 4.58 5.49 86.38 0.47 5.05 16 20 C -0.19 -5.12 5.95 -10.79 -0.06 -5.18 16 21 C -0.16 -2.96 9.18 30.59 0.28 -2.68 16 22 C -0.16 -3.26 10.25 30.60 0.31 -2.94 16 23 C 0.04 1.02 11.96 85.24 1.02 2.04 16 24 N -0.33 -8.10 12.58 -57.02 -0.72 -8.82 16 25 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.20 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 31 H 0.10 2.52 7.40 -2.39 -0.02 2.50 16 32 H 0.11 2.57 6.84 -2.39 -0.02 2.55 16 33 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 34 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 37 H 0.10 2.50 6.17 -2.39 -0.01 2.48 16 38 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.11 1.70 7.87 -2.39 -0.02 1.68 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.19 3.82 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -80.15 363.99 5.44 -74.71 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.98 Total: 13.98 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 6.43 Total: -2.61 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -3.94 Total: -102.30 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.05 Total: -31.41 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -80.15 5.44 -74.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.856 kcal (2) G-P(sol) polarization free energy of solvation -80.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds