Wall clock time and date at job start Tue Mar 31 2020 07:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35748 * 117.00429 * 2 1 4 4 C 1.39489 * 120.80094 * 359.97438 * 3 2 1 5 5 C 1.37798 * 119.25788 * 180.02562 * 4 3 2 6 6 N 1.32062 * 120.91499 * 0.02562 * 5 4 3 7 7 C 1.32489 * 121.75457 * 359.97438 * 6 5 4 8 8 N 1.39026 * 119.67121 * 179.97438 * 7 6 5 9 9 C 1.46948 * 111.00359 * 0.02562 * 8 7 6 10 10 C 1.53049 * 109.36764 * 183.19113 * 9 8 7 11 11 N 1.46961 * 109.36177 * 301.59566 * 10 9 8 12 12 C 1.46896 * 111.00124 * 183.18463 * 11 10 9 13 13 C 1.52996 * 109.47256 * 170.00033 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.46956 * 110.87704 * 59.32220 * 11 10 9 23 23 C 1.46963 * 110.99903 * 123.80289 * 8 7 6 24 24 C 1.38897 * 120.65086 * 0.25580 * 7 6 5 25 25 H 1.09004 * 109.46955 * 300.00281 * 1 2 3 26 26 H 1.09003 * 109.47316 * 60.00119 * 1 2 3 27 27 H 1.09006 * 109.47651 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.37013 * 0.04021 * 4 3 2 29 29 H 1.07998 * 119.54754 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.48998 * 63.22184 * 9 8 7 31 31 H 1.09002 * 109.48626 * 303.15709 * 9 8 7 32 32 H 1.09001 * 109.49268 * 181.63226 * 10 9 8 33 33 H 1.09000 * 109.49067 * 61.56179 * 10 9 8 34 34 H 1.09004 * 109.46774 * 50.00232 * 12 11 10 35 35 H 1.09000 * 109.47723 * 290.00621 * 12 11 10 36 36 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 37 37 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 38 38 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.49195 * 60.64478 * 22 11 10 40 40 H 1.09002 * 109.48564 * 180.71036 * 22 11 10 41 41 H 1.09000 * 109.48524 * 296.77516 * 23 8 7 42 42 H 1.09001 * 109.48887 * 56.81685 * 23 8 7 43 43 H 1.08000 * 120.48481 * 179.72004 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3021 2.3899 -0.0005 5 6 1.9606 3.6003 -0.0011 6 7 3.2801 3.6549 -0.0016 7 6 4.0233 2.5581 -0.0011 8 7 5.4094 2.6660 -0.0022 9 6 5.8280 4.0746 -0.0032 10 6 7.3545 4.1503 -0.0848 11 7 7.9396 3.4308 1.0553 12 6 9.4042 3.5447 1.0541 13 6 9.9588 3.0046 2.3737 14 6 11.4612 3.1220 2.3727 15 1 11.9697 3.5404 1.5167 16 6 12.1864 2.7010 3.4673 17 7 13.4971 2.8085 3.4687 18 14 11.3069 1.9779 4.9483 19 1 11.1794 0.5081 4.7792 20 1 12.0871 2.2688 6.1779 21 1 9.9554 2.5819 5.0651 22 6 7.5210 2.0222 1.0562 23 6 5.9945 1.9469 1.1381 24 6 3.4313 1.3016 -0.0054 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2226 2.3555 -0.0003 29 1 1.3898 4.5172 -0.0011 30 1 5.4886 4.5555 0.9142 31 1 5.3922 4.5828 -0.8634 32 1 7.6689 5.1936 -0.0564 33 1 7.6921 3.6936 -1.0151 34 1 9.6871 4.5914 0.9423 35 1 9.8129 2.9674 0.2248 36 1 9.6759 1.9579 2.4855 37 1 9.5502 3.5819 3.2030 38 1 14.0072 2.5120 4.2386 39 1 7.8604 1.5412 0.1389 40 1 7.9568 1.5139 1.9164 41 1 5.6569 2.4041 2.0683 42 1 5.6798 0.9037 1.1105 43 1 4.0398 0.4093 -0.0095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104718373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:21 Heat of formation + Delta-G solvation = 21.797733 kcal Electronic energy + Delta-G solvation = -22948.306456 eV Core-core repulsion = 19608.388467 eV Total energy + Delta-G solvation = -3339.917989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09830 -39.50945 -38.12801 -35.61743 -32.98734 -32.03242 -31.10818 -30.73998 -29.63381 -27.93714 -26.36948 -24.38790 -23.65743 -22.75123 -22.06571 -20.20800 -19.67684 -18.63333 -17.32695 -16.85690 -16.26118 -16.23780 -15.88571 -15.17031 -15.00628 -14.83344 -14.43289 -14.39087 -14.09910 -13.81407 -13.70829 -13.39441 -12.80548 -12.78133 -12.54375 -12.01348 -11.89724 -11.65606 -11.48404 -11.15754 -11.12295 -10.98436 -10.78958 -10.10272 -9.89958 -9.84987 -9.72133 -9.63035 -9.19369 -9.15522 -8.51464 -8.27821 -7.86957 -6.03014 -4.01073 0.90946 1.14379 2.69717 3.32712 3.36417 3.40504 3.46234 3.72163 4.29226 4.31191 4.45333 4.47446 4.66513 4.69847 4.74549 4.92019 4.99987 5.02752 5.16588 5.22917 5.31648 5.41775 5.49662 5.50117 5.55780 5.64878 5.79077 5.90696 5.94086 6.06658 6.09469 6.14468 6.23865 6.37421 6.64216 6.76876 6.85442 7.03668 7.16463 7.29497 7.57336 7.62752 7.85527 7.86836 8.54472 9.01323 9.59469 11.10382 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027271 B = 0.003018 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.472359 B = 9276.000099 C = 9917.003450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.187 3.813 4 C -0.294 4.294 5 C 0.163 3.837 6 N -0.541 5.541 7 C 0.354 3.646 8 N -0.478 5.478 9 C 0.073 3.927 10 C 0.052 3.948 11 N -0.544 5.544 12 C 0.072 3.928 13 C -0.007 4.007 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.263 1.263 22 C 0.054 3.946 23 C 0.064 3.936 24 C -0.225 4.225 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.136 0.864 29 H 0.158 0.842 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.011 0.989 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.221 -2.700 -7.745 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.133 3.867 4 C -0.317 4.317 5 C 0.005 3.995 6 N -0.259 5.259 7 C 0.123 3.877 8 N -0.194 5.194 9 C -0.053 4.053 10 C -0.077 4.077 11 N -0.269 5.269 12 C -0.055 4.055 13 C -0.045 4.045 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.187 1.187 22 C -0.074 4.074 23 C -0.062 4.062 24 C -0.248 4.248 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.154 0.846 29 H 0.175 0.825 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -27.467 -2.155 -7.625 28.587 hybrid contribution -0.979 -1.175 0.580 1.636 sum -28.446 -3.330 -7.045 29.494 Atomic orbital electron populations 1.23123 0.77778 1.04259 1.01662 1.86064 1.21876 1.26480 1.87805 1.19064 0.91918 0.84439 0.91266 1.22023 1.01252 0.93171 1.15235 1.22311 0.89413 0.96942 0.90804 1.67730 1.07267 1.31179 1.19691 1.19605 0.89718 0.88184 0.90238 1.59241 1.03018 1.16120 1.41068 1.22081 0.94785 0.85651 1.02826 1.22233 0.93139 0.99630 0.92699 1.62296 1.11664 1.11492 1.41476 1.22120 0.82948 1.00944 0.99471 1.19574 0.96322 0.95540 0.93051 1.21085 0.89602 1.41706 1.03540 0.91114 1.25001 0.94689 0.95331 0.98378 1.69914 1.05567 1.48021 1.30796 0.86773 0.80407 0.79698 0.82433 1.20361 1.21450 1.18735 1.22206 0.92520 0.90557 1.02155 1.22418 0.95486 0.98310 0.89985 1.20740 0.92014 0.98646 1.13420 0.92337 0.92347 0.87935 0.84642 0.82519 0.92196 0.89574 0.89874 0.94393 0.91305 0.95369 0.97121 0.95727 0.92744 0.93944 0.88869 0.92558 0.89652 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.84 101.05 0.99 1.13 16 2 O -0.31 -2.99 10.51 -18.95 -0.20 -3.19 16 3 C 0.19 1.99 6.73 -38.87 -0.26 1.73 16 4 C -0.29 -2.63 9.10 -39.28 -0.36 -2.99 16 5 C 0.16 1.61 11.17 -17.61 -0.20 1.41 16 6 N -0.54 -6.89 8.70 -12.51 -0.11 -7.00 16 7 C 0.35 4.67 6.40 -155.01 -0.99 3.68 16 8 N -0.48 -6.58 4.73 -173.08 -0.82 -7.40 16 9 C 0.07 1.01 4.78 -3.77 -0.02 0.99 16 10 C 0.05 0.76 5.61 -3.77 -0.02 0.74 16 11 N -0.54 -9.45 4.71 -234.47 -1.10 -10.56 16 12 C 0.07 1.45 4.90 -3.83 -0.02 1.43 16 13 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 14 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 18 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 C 0.05 0.85 5.41 -3.77 -0.02 0.83 16 23 C 0.06 0.86 5.37 -3.76 -0.02 0.84 16 24 C -0.22 -2.70 9.17 -39.09 -0.36 -3.06 16 25 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 26 H 0.06 0.24 7.71 -51.93 -0.40 -0.16 16 27 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.14 0.81 6.46 -52.49 -0.34 0.47 16 29 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 31 H 0.09 1.13 7.82 -51.93 -0.41 0.72 16 32 H 0.08 1.15 8.07 -51.93 -0.42 0.74 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.39 8.03 -51.93 -0.42 0.98 16 35 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.01 0.25 5.93 -51.93 -0.31 -0.06 16 37 H 0.02 0.61 7.19 -51.93 -0.37 0.23 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.54 6.34 -51.93 -0.33 1.22 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.00 6.80 -51.93 -0.35 0.64 16 43 H 0.14 1.62 7.19 -52.49 -0.38 1.24 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -32.67 340.74 -9.47 -42.14 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.66 Total: -2.17 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.81 Total: -6.90 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -1.26 Total: -52.22 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: -0.20 Total: -3.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.67 -9.47 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104718373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.935 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds