Wall clock time and date at job start Tue Mar 31 2020 07:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35748 * 117.00429 * 2 1 4 4 C 1.39489 * 120.80094 * 359.97438 * 3 2 1 5 5 C 1.37798 * 119.25788 * 180.02562 * 4 3 2 6 6 N 1.32062 * 120.91499 * 0.02562 * 5 4 3 7 7 C 1.32489 * 121.75457 * 359.97438 * 6 5 4 8 8 N 1.39026 * 119.67121 * 179.97438 * 7 6 5 9 9 C 1.46948 * 111.00359 * 0.02562 * 8 7 6 10 10 C 1.53049 * 109.36764 * 183.19113 * 9 8 7 11 11 N 1.46961 * 109.36177 * 301.59566 * 10 9 8 12 12 C 1.46896 * 111.00124 * 183.18463 * 11 10 9 13 13 C 1.52996 * 109.47256 * 170.00033 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.46956 * 110.87704 * 59.32220 * 11 10 9 23 23 C 1.46963 * 110.99903 * 123.80289 * 8 7 6 24 24 C 1.38897 * 120.65086 * 0.25580 * 7 6 5 25 25 H 1.09004 * 109.46955 * 300.00281 * 1 2 3 26 26 H 1.09003 * 109.47316 * 60.00119 * 1 2 3 27 27 H 1.09006 * 109.47651 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.37013 * 0.04021 * 4 3 2 29 29 H 1.07998 * 119.54754 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.48998 * 63.22184 * 9 8 7 31 31 H 1.09002 * 109.48626 * 303.15709 * 9 8 7 32 32 H 1.09001 * 109.49268 * 181.63226 * 10 9 8 33 33 H 1.09000 * 109.49067 * 61.56179 * 10 9 8 34 34 H 1.09004 * 109.46774 * 50.00232 * 12 11 10 35 35 H 1.09000 * 109.47723 * 290.00621 * 12 11 10 36 36 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 37 37 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 38 38 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.49195 * 60.64478 * 22 11 10 40 40 H 1.09002 * 109.48564 * 180.71036 * 22 11 10 41 41 H 1.09000 * 109.48524 * 296.77516 * 23 8 7 42 42 H 1.09001 * 109.48887 * 56.81685 * 23 8 7 43 43 H 1.08000 * 120.48481 * 179.72004 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3021 2.3899 -0.0005 5 6 1.9606 3.6003 -0.0011 6 7 3.2801 3.6549 -0.0016 7 6 4.0233 2.5581 -0.0011 8 7 5.4094 2.6660 -0.0022 9 6 5.8280 4.0746 -0.0032 10 6 7.3545 4.1503 -0.0848 11 7 7.9396 3.4308 1.0553 12 6 9.4042 3.5447 1.0541 13 6 9.9588 3.0046 2.3737 14 6 11.4612 3.1220 2.3727 15 1 11.9697 3.5404 1.5167 16 6 12.1864 2.7010 3.4673 17 7 13.4971 2.8085 3.4687 18 14 11.3069 1.9779 4.9483 19 1 11.1794 0.5081 4.7792 20 1 12.0871 2.2688 6.1779 21 1 9.9554 2.5819 5.0651 22 6 7.5210 2.0222 1.0562 23 6 5.9945 1.9469 1.1381 24 6 3.4313 1.3016 -0.0054 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2226 2.3555 -0.0003 29 1 1.3898 4.5172 -0.0011 30 1 5.4886 4.5555 0.9142 31 1 5.3922 4.5828 -0.8634 32 1 7.6689 5.1936 -0.0564 33 1 7.6921 3.6936 -1.0151 34 1 9.6871 4.5914 0.9423 35 1 9.8129 2.9674 0.2248 36 1 9.6759 1.9579 2.4855 37 1 9.5502 3.5819 3.2030 38 1 14.0072 2.5120 4.2386 39 1 7.8604 1.5412 0.1389 40 1 7.9568 1.5139 1.9164 41 1 5.6569 2.4041 2.0683 42 1 5.6798 0.9037 1.1105 43 1 4.0398 0.4093 -0.0095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104718373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:21 Heat of formation + Delta-G solvation = -1.143245 kcal Electronic energy + Delta-G solvation = -22949.301251 eV Core-core repulsion = 19608.388467 eV Total energy + Delta-G solvation = -3340.912784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.93635 -40.44217 -39.07751 -36.87365 -34.99937 -32.95997 -32.55707 -31.80922 -30.92055 -28.62718 -27.63561 -25.40952 -25.28848 -23.72535 -23.02295 -21.89782 -20.90428 -19.46502 -18.97964 -18.07540 -17.21924 -16.86201 -16.72050 -16.46359 -16.15212 -15.99935 -15.97324 -15.50906 -15.34167 -15.01687 -14.71569 -14.61407 -14.52054 -14.01955 -13.40440 -13.36658 -13.13729 -12.85605 -12.50700 -12.48034 -12.33235 -12.18998 -12.16454 -11.78833 -11.69501 -11.44663 -11.35716 -10.95286 -10.74275 -10.53695 -9.90165 -9.30555 -9.17689 -8.28963 -6.33053 0.10553 0.35405 1.36685 1.39407 1.52301 2.04332 2.37452 2.51131 2.87370 2.95378 3.06679 3.51048 3.74186 3.85272 3.98702 4.06481 4.06737 4.19837 4.28635 4.34450 4.35946 4.38613 4.47186 4.50225 4.60086 4.65101 4.73362 4.76875 4.80127 4.88188 4.90794 4.96223 5.01897 5.09214 5.26669 5.30794 5.46811 5.60892 5.64096 6.01369 6.13354 6.17800 6.25671 6.30762 6.74631 7.04250 7.31577 8.87750 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027271 B = 0.003018 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.472359 B = 9276.000099 C = 9917.003450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.181 3.819 4 C -0.282 4.282 5 C 0.155 3.845 6 N -0.563 5.563 7 C 0.335 3.665 8 N -0.485 5.485 9 C 0.086 3.914 10 C 0.054 3.946 11 N -0.550 5.550 12 C 0.084 3.916 13 C 0.001 3.999 14 C -0.532 4.532 15 H 0.032 0.968 16 C 0.006 3.994 17 N -0.951 5.951 18 Si 0.951 3.049 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.248 1.248 22 C 0.054 3.946 23 C 0.073 3.927 24 C -0.239 4.239 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.120 0.880 28 H 0.169 0.831 29 H 0.188 0.812 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.267 0.733 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.861 -3.333 -7.331 32.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.127 3.873 4 C -0.303 4.303 5 C -0.002 4.002 6 N -0.282 5.282 7 C 0.104 3.896 8 N -0.202 5.202 9 C -0.041 4.041 10 C -0.074 4.074 11 N -0.275 5.275 12 C -0.043 4.043 13 C -0.037 4.037 14 C -0.571 4.571 15 H 0.051 0.949 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.774 3.226 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.172 1.172 22 C -0.075 4.075 23 C -0.052 4.052 24 C -0.263 4.263 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.138 0.862 28 H 0.186 0.814 29 H 0.205 0.795 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -31.152 -2.791 -7.232 32.102 hybrid contribution 0.047 -0.976 0.360 1.042 sum -31.105 -3.767 -6.872 32.077 Atomic orbital electron populations 1.23462 0.75482 1.05987 1.02867 1.86051 1.24264 1.26117 1.87530 1.19203 0.91719 0.85498 0.90868 1.22358 1.02833 0.92085 1.13060 1.22885 0.88678 0.98648 0.89954 1.67707 1.08731 1.31253 1.20472 1.19605 0.89327 0.88870 0.91770 1.59263 1.04024 1.15775 1.41179 1.21911 0.93575 0.86086 1.02533 1.22276 0.93867 0.99669 0.91589 1.62229 1.09470 1.12824 1.42980 1.21803 0.85050 1.00238 0.97200 1.19436 0.93241 0.96163 0.94856 1.21413 0.92145 1.41094 1.02398 0.94931 1.25980 0.95395 0.95818 1.01907 1.70064 1.07457 1.49527 1.32103 0.85643 0.79573 0.79390 0.77967 1.18945 1.21020 1.17166 1.22222 0.94149 0.89433 1.01656 1.22302 0.93678 0.99437 0.89823 1.20807 0.93082 0.98215 1.14159 0.91104 0.91037 0.86171 0.81367 0.79496 0.93254 0.88886 0.89111 0.94466 0.91725 0.96144 0.96193 0.96089 0.92464 0.94094 0.89694 0.93379 0.87803 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 113.37 1.12 1.23 16 2 O -0.33 -5.58 10.51 -90.73 -0.95 -6.53 16 3 C 0.18 3.48 6.73 22.73 0.15 3.64 16 4 C -0.28 -4.15 9.10 22.47 0.20 -3.94 16 5 C 0.16 2.64 11.17 84.55 0.94 3.58 16 6 N -0.56 -13.46 8.70 -193.49 -1.68 -15.14 16 7 C 0.33 8.47 6.40 132.97 0.85 9.32 16 8 N -0.48 -12.98 4.73 -701.52 -3.32 -16.30 16 9 C 0.09 2.30 4.78 86.31 0.41 2.71 16 10 C 0.05 1.57 5.61 86.31 0.48 2.05 16 11 N -0.55 -18.86 4.71 -895.71 -4.22 -23.07 16 12 C 0.08 3.45 4.90 86.30 0.42 3.87 16 13 C 0.00 0.04 3.97 29.85 0.12 0.16 16 14 C -0.53 -31.18 9.66 25.60 0.25 -30.93 16 15 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 16 C 0.01 0.34 5.47 84.66 0.46 0.81 16 17 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 18 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 19 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 22 C 0.05 1.66 5.41 86.31 0.47 2.13 16 23 C 0.07 1.93 5.37 86.31 0.46 2.39 16 24 C -0.24 -5.49 9.17 22.59 0.21 -5.28 16 25 H 0.07 0.35 7.71 -2.38 -0.02 0.33 16 26 H 0.07 0.34 7.71 -2.39 -0.02 0.32 16 27 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.17 1.27 6.46 -2.91 -0.02 1.25 16 29 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 30 H 0.05 1.42 8.05 -2.39 -0.02 1.40 16 31 H 0.09 2.36 7.82 -2.39 -0.02 2.34 16 32 H 0.09 2.46 8.07 -2.39 -0.02 2.44 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 2.66 8.03 -2.38 -0.02 2.64 16 35 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 36 H 0.02 0.92 5.93 -2.38 -0.01 0.91 16 37 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 38 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 2.75 6.34 -2.39 -0.02 2.73 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 2.32 6.80 -2.39 -0.02 2.30 16 43 H 0.14 3.12 7.19 -2.91 -0.02 3.10 16 Total: -1.00 -71.56 340.74 -0.50 -72.06 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.93 Total: 10.45 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 6.55 Total: -8.26 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -8.92 Total: -114.57 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.95 Total: -6.53 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -71.56 -0.50 -72.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104718373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.917 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds