Wall clock time and date at job start Tue Mar 31 2020 06:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46875 * 2 1 4 4 C 1.35670 * 117.00153 * 180.02562 * 3 2 1 5 5 C 1.38774 * 119.64197 * 179.97438 * 4 3 2 6 6 C 1.38590 * 119.27630 * 179.97438 * 5 4 3 7 7 C 1.38495 * 118.57000 * 0.02562 * 6 5 4 8 8 C 1.38984 * 119.22036 * 359.97438 * 7 6 5 9 9 N 1.38995 * 119.66557 * 180.02562 * 8 7 6 10 10 C 1.46959 * 110.99641 * 179.97438 * 9 8 7 11 11 C 1.53058 * 109.36419 * 183.18917 * 10 9 8 12 12 N 1.46955 * 109.36051 * 301.59955 * 11 10 9 13 13 C 1.46906 * 110.99744 * 183.18754 * 12 11 10 14 14 C 1.50703 * 109.47109 * 169.99905 * 13 12 11 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99989 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99944 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47418 * 89.99710 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99770 * 18 16 14 21 21 H 1.48498 * 109.46997 * 329.99580 * 18 16 14 22 22 C 1.46959 * 110.88319 * 59.32174 * 12 11 10 23 23 C 1.46959 * 111.00211 * 303.79780 * 9 8 7 24 24 N 1.32328 * 119.63599 * 0.24869 * 4 3 2 25 25 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47250 * 299.99366 * 1 2 3 27 27 H 1.08998 * 109.47054 * 59.99936 * 1 2 3 28 28 H 1.08999 * 109.47250 * 240.00634 * 2 1 3 29 29 H 1.08994 * 109.47511 * 120.00010 * 2 1 3 30 30 H 1.07999 * 120.36185 * 0.02562 * 5 4 3 31 31 H 1.08004 * 120.71618 * 179.97438 * 6 5 4 32 32 H 1.08002 * 120.39150 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.48972 * 63.22092 * 10 9 8 34 34 H 1.08993 * 109.50763 * 303.16801 * 10 9 8 35 35 H 1.08994 * 109.48935 * 181.63483 * 11 10 9 36 36 H 1.08999 * 109.48934 * 61.56553 * 11 10 9 37 37 H 1.08992 * 109.47459 * 289.99824 * 13 12 11 38 38 H 1.09004 * 109.47040 * 49.99975 * 13 12 11 39 39 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.48972 * 60.64434 * 22 12 11 41 41 H 1.08998 * 109.48999 * 180.71033 * 22 12 11 42 42 H 1.08999 * 109.48803 * 296.78107 * 23 9 8 43 43 H 1.09000 * 109.48812 * 56.82743 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5252 -0.0005 5 6 3.8736 2.8109 -0.0011 6 6 5.2486 2.9838 -0.0011 7 6 6.0576 1.8596 -0.0011 8 6 5.4692 0.6004 -0.0005 9 7 6.2723 -0.5341 0.0000 10 6 5.4566 -1.7565 0.0012 11 6 6.3743 -2.9788 0.0821 12 7 7.3011 -2.9685 -1.0583 13 6 8.1498 -4.1676 -1.0577 14 6 8.9076 -4.2474 -2.3579 15 1 8.7726 -3.4834 -3.1093 16 6 9.7732 -5.2955 -2.5882 17 7 9.9380 -6.2255 -1.6729 18 14 10.7130 -5.3940 -4.1995 19 1 12.0080 -4.6803 -4.0617 20 1 10.9659 -6.8174 -4.5388 21 1 9.9122 -4.7626 -5.2789 22 6 8.1168 -1.7461 -1.0594 23 6 7.1995 -0.5236 -1.1400 24 7 4.1507 0.4707 -0.0060 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2157 3.6674 -0.0007 31 1 5.6802 3.9739 -0.0020 32 1 7.1329 1.9602 -0.0007 33 1 4.8694 -1.8028 -0.9159 34 1 4.7874 -1.7467 0.8614 35 1 5.7730 -3.8875 0.0538 36 1 6.9417 -2.9466 1.0122 37 1 8.8554 -4.1130 -0.2288 38 1 7.5258 -5.0544 -0.9458 39 1 10.5472 -6.9627 -1.8348 40 1 8.7040 -1.6999 -0.1424 41 1 8.7858 -1.7561 -1.9199 42 1 6.6324 -0.5556 -2.0703 43 1 7.8006 0.3853 -1.1116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106873907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:33 Heat of formation + Delta-G solvation = 18.037784 kcal Electronic energy + Delta-G solvation = -23271.285857 eV Core-core repulsion = 19931.204825 eV Total energy + Delta-G solvation = -3340.081032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91630 -39.12782 -37.66295 -35.07115 -32.64559 -32.42564 -31.81028 -30.56942 -29.56090 -27.59326 -25.27912 -24.18947 -23.39246 -22.35245 -22.04622 -21.34711 -19.36743 -18.49834 -17.14666 -16.40865 -16.32783 -16.01464 -15.73646 -14.79525 -14.72796 -14.45336 -14.29093 -13.90998 -13.77920 -13.63275 -13.46716 -13.10551 -12.75941 -12.42307 -12.21569 -12.06579 -11.77275 -11.67683 -11.29176 -10.97970 -10.90310 -10.82273 -10.75239 -10.52312 -10.41282 -10.03911 -9.81511 -9.64844 -9.27737 -9.13999 -8.46060 -7.88643 -7.29749 -6.04935 -4.06753 1.15456 1.27487 2.92102 3.30095 3.36634 3.40671 3.49479 3.83927 4.39334 4.40161 4.83613 4.84604 4.86953 4.94944 5.03169 5.13335 5.18868 5.26983 5.30850 5.39961 5.46285 5.53067 5.63267 5.64605 5.73864 5.77777 5.80680 5.88127 5.95254 6.16744 6.17418 6.26645 6.39210 6.52130 6.56886 6.79902 7.02474 7.26150 7.30889 7.37026 7.76252 7.91225 8.04258 8.15049 8.50302 9.00535 9.57701 11.05910 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.003335 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.797893 B = 8394.347849 C = 9030.434055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.347 3.653 5 C -0.230 4.230 6 C -0.021 4.021 7 C -0.228 4.228 8 C 0.361 3.639 9 N -0.477 5.477 10 C 0.075 3.925 11 C 0.052 3.948 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.066 3.934 23 C 0.064 3.936 24 N -0.574 5.574 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.031 0.969 37 H -0.007 1.007 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.033 0.967 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 16.656 4.378 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.168 3.832 5 C -0.252 4.252 6 C -0.047 4.047 7 C -0.251 4.251 8 C 0.130 3.870 9 N -0.194 5.194 10 C -0.052 4.052 11 C -0.077 4.077 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.063 4.063 23 C -0.061 4.061 24 N -0.304 5.304 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.010 0.990 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.770 15.743 4.387 21.371 hybrid contribution 1.029 0.322 -0.547 1.209 sum -12.740 16.065 3.840 20.860 Atomic orbital electron populations 1.21816 0.93153 1.02907 1.03074 1.22584 0.94538 0.81072 1.02711 1.86215 1.17085 1.30684 1.87741 1.19536 0.83507 0.89551 0.90654 1.20834 0.95785 0.95369 1.13212 1.21191 0.92099 0.98940 0.92425 1.21419 1.01458 0.91278 1.10967 1.19579 0.86444 0.91067 0.89934 1.59328 1.17528 1.01374 1.41139 1.22063 0.94305 0.86807 1.02043 1.22177 0.95552 0.96658 0.93350 1.62316 1.20629 1.03756 1.39697 1.19713 0.90583 0.86122 0.96698 1.21145 1.23243 1.08799 1.01559 0.91892 1.24990 0.97001 0.95599 0.96986 1.69959 1.37242 1.12502 1.34033 0.86503 0.80052 0.77188 0.83716 1.20714 1.21254 1.19774 1.22038 0.94249 0.88226 1.01792 1.22472 0.94039 1.00059 0.89556 1.67212 1.05546 1.33672 1.23983 0.90283 0.91804 0.91754 0.91533 0.91635 0.84617 0.84217 0.84423 0.92627 0.90325 0.90469 0.95064 0.98950 0.95090 0.92889 0.94912 0.88782 0.92910 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.81 16 2 C 0.07 0.71 6.03 37.16 0.22 0.94 16 3 O -0.31 -3.91 10.11 -18.71 -0.19 -4.10 16 4 C 0.35 4.68 7.48 -17.14 -0.13 4.55 16 5 C -0.23 -2.59 10.03 -39.25 -0.39 -2.98 16 6 C -0.02 -0.21 10.16 -39.36 -0.40 -0.61 16 7 C -0.23 -2.77 9.21 -39.21 -0.36 -3.13 16 8 C 0.36 5.30 6.40 -155.01 -0.99 4.31 16 9 N -0.48 -7.52 4.73 -173.07 -0.82 -8.34 16 10 C 0.07 1.22 4.78 -3.76 -0.02 1.20 16 11 C 0.05 0.95 5.61 -3.76 -0.02 0.93 16 12 N -0.54 -11.56 4.70 -235.91 -1.11 -12.67 16 13 C 0.19 5.01 4.72 -4.97 -0.02 4.98 16 14 C -0.51 -14.08 8.47 -34.44 -0.29 -14.37 16 15 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 18 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.07 1.25 5.43 -3.77 -0.02 1.23 16 23 C 0.06 1.01 5.37 -3.77 -0.02 0.98 16 24 N -0.57 -8.49 7.55 -12.51 -0.09 -8.58 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.14 1.47 7.17 -52.49 -0.38 1.09 16 33 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 34 H 0.08 1.22 7.83 -51.93 -0.41 0.81 16 35 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 38 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.88 6.79 -51.93 -0.35 1.52 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.06 6.78 -51.93 -0.35 0.71 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -30.66 348.11 -10.31 -40.97 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.90 Total: -1.81 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.16 Total: -1.32 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -1.29 Total: -55.36 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.19 Total: -4.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.66 -10.31 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106873907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.008 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds