Wall clock time and date at job start Tue Mar 31 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46875 * 2 1 4 4 C 1.35670 * 117.00153 * 180.02562 * 3 2 1 5 5 C 1.38774 * 119.64197 * 179.97438 * 4 3 2 6 6 C 1.38590 * 119.27630 * 179.97438 * 5 4 3 7 7 C 1.38495 * 118.57000 * 0.02562 * 6 5 4 8 8 C 1.38984 * 119.22036 * 359.97438 * 7 6 5 9 9 N 1.38995 * 119.66557 * 180.02562 * 8 7 6 10 10 C 1.46959 * 110.99641 * 179.97438 * 9 8 7 11 11 C 1.53058 * 109.36419 * 183.18917 * 10 9 8 12 12 N 1.46955 * 109.36051 * 301.59955 * 11 10 9 13 13 C 1.46906 * 110.99744 * 183.18754 * 12 11 10 14 14 C 1.50703 * 109.47109 * 169.99905 * 13 12 11 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99989 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99944 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47418 * 89.99710 * 18 16 14 20 20 H 1.48498 * 109.47091 * 209.99770 * 18 16 14 21 21 H 1.48498 * 109.46997 * 329.99580 * 18 16 14 22 22 C 1.46959 * 110.88319 * 59.32174 * 12 11 10 23 23 C 1.46959 * 111.00211 * 303.79780 * 9 8 7 24 24 N 1.32328 * 119.63599 * 0.24869 * 4 3 2 25 25 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47250 * 299.99366 * 1 2 3 27 27 H 1.08998 * 109.47054 * 59.99936 * 1 2 3 28 28 H 1.08999 * 109.47250 * 240.00634 * 2 1 3 29 29 H 1.08994 * 109.47511 * 120.00010 * 2 1 3 30 30 H 1.07999 * 120.36185 * 0.02562 * 5 4 3 31 31 H 1.08004 * 120.71618 * 179.97438 * 6 5 4 32 32 H 1.08002 * 120.39150 * 180.02562 * 7 6 5 33 33 H 1.08995 * 109.48972 * 63.22092 * 10 9 8 34 34 H 1.08993 * 109.50763 * 303.16801 * 10 9 8 35 35 H 1.08994 * 109.48935 * 181.63483 * 11 10 9 36 36 H 1.08999 * 109.48934 * 61.56553 * 11 10 9 37 37 H 1.08992 * 109.47459 * 289.99824 * 13 12 11 38 38 H 1.09004 * 109.47040 * 49.99975 * 13 12 11 39 39 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.48972 * 60.64434 * 22 12 11 41 41 H 1.08998 * 109.48999 * 180.71033 * 22 12 11 42 42 H 1.08999 * 109.48803 * 296.78107 * 23 9 8 43 43 H 1.09000 * 109.48812 * 56.82743 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5252 -0.0005 5 6 3.8736 2.8109 -0.0011 6 6 5.2486 2.9838 -0.0011 7 6 6.0576 1.8596 -0.0011 8 6 5.4692 0.6004 -0.0005 9 7 6.2723 -0.5341 0.0000 10 6 5.4566 -1.7565 0.0012 11 6 6.3743 -2.9788 0.0821 12 7 7.3011 -2.9685 -1.0583 13 6 8.1498 -4.1676 -1.0577 14 6 8.9076 -4.2474 -2.3579 15 1 8.7726 -3.4834 -3.1093 16 6 9.7732 -5.2955 -2.5882 17 7 9.9380 -6.2255 -1.6729 18 14 10.7130 -5.3940 -4.1995 19 1 12.0080 -4.6803 -4.0617 20 1 10.9659 -6.8174 -4.5388 21 1 9.9122 -4.7626 -5.2789 22 6 8.1168 -1.7461 -1.0594 23 6 7.1995 -0.5236 -1.1400 24 7 4.1507 0.4707 -0.0060 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2157 3.6674 -0.0007 31 1 5.6802 3.9739 -0.0020 32 1 7.1329 1.9602 -0.0007 33 1 4.8694 -1.8028 -0.9159 34 1 4.7874 -1.7467 0.8614 35 1 5.7730 -3.8875 0.0538 36 1 6.9417 -2.9466 1.0122 37 1 8.8554 -4.1130 -0.2288 38 1 7.5258 -5.0544 -0.9458 39 1 10.5472 -6.9627 -1.8348 40 1 8.7040 -1.6999 -0.1424 41 1 8.7858 -1.7561 -1.9199 42 1 6.6324 -0.5556 -2.0703 43 1 7.8006 0.3853 -1.1116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106873907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:32 Heat of formation + Delta-G solvation = -2.960750 kcal Electronic energy + Delta-G solvation = -23272.196422 eV Core-core repulsion = 19931.204825 eV Total energy + Delta-G solvation = -3340.991597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93853 -40.31455 -38.82539 -36.54838 -34.60124 -33.41480 -32.72086 -31.98250 -30.77754 -29.21051 -26.90739 -25.30481 -24.58626 -23.69536 -23.20930 -22.75350 -20.83358 -19.47620 -18.54147 -18.17401 -17.31450 -17.01878 -16.88876 -16.50682 -15.96119 -15.92258 -15.69752 -15.30878 -15.20378 -14.73417 -14.56067 -14.28631 -13.98830 -13.52784 -13.43972 -13.26592 -13.09070 -12.92155 -12.75529 -12.58281 -12.48457 -12.35677 -12.19687 -12.09760 -11.75855 -11.64628 -11.24217 -10.98236 -10.65355 -10.62189 -10.31072 -9.10421 -8.92675 -8.20938 -6.31506 0.18557 0.38177 1.41941 1.43420 1.54981 2.05407 2.39670 2.41561 2.84039 3.11220 3.22565 3.37223 3.84878 4.04154 4.06293 4.10162 4.11955 4.18253 4.24820 4.28323 4.34878 4.37744 4.44820 4.50313 4.58509 4.78442 4.86531 4.87681 4.93557 4.93880 4.97019 4.99777 5.16629 5.19668 5.22812 5.29868 5.42316 5.61788 5.63750 5.95135 6.02619 6.26143 6.36426 6.55593 6.83952 6.90961 7.38431 8.90427 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.003335 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.797893 B = 8394.347849 C = 9030.434055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 O -0.316 6.316 4 C 0.322 3.678 5 C -0.223 4.223 6 C -0.010 4.010 7 C -0.226 4.226 8 C 0.332 3.668 9 N -0.483 5.483 10 C 0.092 3.908 11 C 0.054 3.946 12 N -0.546 5.546 13 C 0.209 3.791 14 C -0.524 4.524 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.068 3.932 23 C 0.077 3.923 24 N -0.594 5.594 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.155 0.845 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.025 0.975 37 H -0.036 1.036 38 H 0.004 0.996 39 H 0.265 0.735 40 H 0.025 0.975 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.585 19.399 3.637 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.010 4.010 3 O -0.224 6.224 4 C 0.143 3.857 5 C -0.244 4.244 6 C -0.035 4.035 7 C -0.249 4.249 8 C 0.102 3.898 9 N -0.201 5.201 10 C -0.035 4.035 11 C -0.075 4.075 12 N -0.271 5.271 13 C 0.083 3.917 14 C -0.562 4.562 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.575 5.575 18 Si 0.795 3.205 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.189 1.189 22 C -0.061 4.061 23 C -0.048 4.048 24 N -0.324 5.324 25 H 0.112 0.888 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.178 0.822 31 H 0.200 0.800 32 H 0.172 0.828 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.043 0.957 37 H -0.019 1.019 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.052 18.520 3.654 23.534 hybrid contribution 1.031 -0.452 -0.261 1.156 sum -13.021 18.068 3.393 22.528 Atomic orbital electron populations 1.21810 0.90813 1.04076 1.03507 1.22671 0.96347 0.80429 1.01601 1.86217 1.16908 1.31389 1.87860 1.19942 0.83708 0.90271 0.91783 1.21262 0.96829 0.95133 1.11191 1.21669 0.91371 1.00175 0.90299 1.21701 1.02612 0.90706 1.09875 1.19696 0.86523 0.91364 0.92213 1.59375 1.17878 1.01510 1.41321 1.21789 0.93565 0.86422 1.01726 1.22200 0.95184 0.98104 0.91978 1.62237 1.20395 1.03240 1.41250 1.19355 0.89871 0.87194 0.95253 1.21441 1.23628 1.09019 1.02087 0.91667 1.25930 0.97913 0.95051 1.00747 1.70092 1.38046 1.13177 1.36227 0.85359 0.78752 0.77309 0.79061 1.19605 1.20903 1.18872 1.22023 0.94691 0.88544 1.00830 1.22338 0.93709 0.99386 0.89404 1.67075 1.05952 1.34944 1.24438 0.88767 0.91206 0.91396 0.92898 0.92511 0.82227 0.80033 0.82767 0.93808 0.89568 0.90611 0.95657 1.01880 0.97812 0.92660 0.95630 0.89952 0.93806 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.06 1.38 6.03 71.98 0.43 1.82 16 3 O -0.32 -7.70 10.11 -89.87 -0.91 -8.60 16 4 C 0.32 8.25 7.48 84.75 0.63 8.88 16 5 C -0.22 -4.31 10.03 22.48 0.23 -4.09 16 6 C -0.01 -0.16 10.16 22.42 0.23 0.06 16 7 C -0.23 -4.81 9.21 22.51 0.21 -4.60 16 8 C 0.33 9.30 6.40 133.00 0.85 10.15 16 9 N -0.48 -14.96 4.73 -701.46 -3.32 -18.28 16 10 C 0.09 3.06 4.78 86.31 0.41 3.47 16 11 C 0.05 2.07 5.61 86.31 0.48 2.56 16 12 N -0.55 -24.26 4.70 -900.28 -4.23 -28.49 16 13 C 0.21 11.34 4.72 85.56 0.40 11.74 16 14 C -0.52 -29.63 8.47 25.60 0.22 -29.41 16 15 H 0.07 3.59 7.13 -2.91 -0.02 3.56 16 16 C 0.00 0.09 5.46 84.65 0.46 0.56 16 17 N -0.94 -56.46 13.29 21.45 0.28 -56.18 16 18 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.07 2.60 5.43 86.31 0.47 3.07 16 23 C 0.08 2.35 5.37 86.31 0.46 2.81 16 24 N -0.59 -17.18 7.55 -306.33 -2.31 -19.49 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 29 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 30 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.15 2.71 7.17 -2.91 -0.02 2.69 16 33 H 0.04 1.54 8.04 -2.39 -0.02 1.53 16 34 H 0.09 2.71 7.83 -2.39 -0.02 2.69 16 35 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 38 H 0.00 0.22 8.03 -2.38 -0.02 0.20 16 39 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 41 H 0.08 3.33 6.79 -2.39 -0.02 3.31 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.11 2.71 6.78 -2.39 -0.02 2.69 16 Total: -1.00 -67.91 348.11 -1.25 -69.16 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.98 Total: 10.19 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.23 Total: 5.66 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -9.58 Total: -122.44 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.91 Total: -8.60 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.91 -1.25 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106873907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.200 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds