Wall clock time and date at job start Tue Mar 31 2020 06:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47555 * 2 1 4 4 C 1.46502 * 119.99871 * 270.00227 * 3 2 1 5 5 C 1.53005 * 109.47129 * 237.49628 * 4 3 2 6 6 C 1.34774 * 120.00125 * 89.99531 * 3 2 1 7 7 O 1.21584 * 119.99886 * 28.42595 * 6 3 2 8 8 N 1.34778 * 119.99878 * 208.41876 * 6 3 2 9 9 C 1.46498 * 120.00379 * 11.32654 * 8 6 3 10 10 C 1.50699 * 109.46950 * 265.47992 * 9 8 6 11 11 H 1.08001 * 119.99814 * 325.99504 * 10 9 8 12 12 C 1.37883 * 120.00215 * 145.98998 * 10 9 8 13 13 N 1.31513 * 119.99724 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99843 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47400 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46989 * 120.00567 * 14 12 10 17 17 H 1.48503 * 109.47022 * 239.99753 * 14 12 10 18 18 C 1.46504 * 119.99941 * 191.31780 * 8 6 3 19 19 C 1.50707 * 109.46710 * 90.00287 * 18 8 6 20 20 C 1.38231 * 119.61313 * 95.02654 * 19 18 8 21 21 C 1.38628 * 119.15616 * 179.74743 * 20 19 18 22 22 C 1.38679 * 118.42080 * 0.46833 * 21 20 19 23 23 C 1.38182 * 119.16276 * 359.50887 * 22 21 20 24 24 N 1.31852 * 119.62085 * 274.99944 * 19 18 8 25 25 H 1.09006 * 109.46792 * 59.99910 * 1 2 3 26 26 H 1.08999 * 109.47705 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47421 * 300.00694 * 1 2 3 28 28 H 1.08997 * 109.47178 * 239.99791 * 2 1 3 29 29 H 1.09005 * 109.47507 * 119.99889 * 2 1 3 30 30 H 1.09001 * 109.47154 * 357.49018 * 4 3 2 31 31 H 1.08993 * 109.47492 * 117.49997 * 4 3 2 32 32 H 1.08994 * 109.47287 * 215.05699 * 5 4 3 33 33 H 1.08998 * 109.46918 * 335.06281 * 5 4 3 34 34 H 1.09004 * 109.47307 * 95.05555 * 5 4 3 35 35 H 1.09007 * 109.47093 * 25.47356 * 9 8 6 36 36 H 1.08996 * 109.47599 * 145.47590 * 9 8 6 37 37 H 0.97002 * 119.99676 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.46928 * 330.00529 * 18 8 6 39 39 H 1.08996 * 109.47292 * 210.00470 * 18 8 6 40 40 H 1.07991 * 120.42161 * 359.94653 * 20 19 18 41 41 H 1.07998 * 120.78817 * 180.22991 * 21 20 19 42 42 H 1.07997 * 120.41539 * 179.78588 * 22 21 20 43 43 H 1.08000 * 119.61386 * 180.25655 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7183 2.5395 -1.3229 6 6 2.2429 2.0165 1.1672 7 8 2.5494 1.3800 2.1567 8 7 2.1280 3.3576 1.2374 9 6 1.5240 4.1001 0.1283 10 6 2.6077 4.5914 -0.7964 11 1 3.5679 4.8823 -0.3966 12 6 2.3736 4.6693 -2.1530 13 7 1.2046 4.3144 -2.6399 14 14 3.7172 5.2775 -3.2992 15 1 4.9295 5.6100 -2.5086 16 1 4.0452 4.2161 -4.2847 17 1 3.2453 6.4895 -4.0160 18 6 2.6068 4.0727 2.4230 19 6 4.0503 4.4592 2.2275 20 6 4.3615 5.7173 1.7468 21 6 5.6926 6.0647 1.5756 22 6 6.6650 5.1260 1.8863 23 6 6.2779 3.8879 2.3627 24 7 5.0017 3.5936 2.5174 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0690 1.3898 -2.0968 31 1 1.6008 2.9343 -1.3462 32 1 3.7745 3.4923 -1.8491 33 1 4.0987 2.6613 -0.3088 34 1 4.3189 1.7977 -1.8495 35 1 0.8468 3.4459 -0.4209 36 1 0.9680 4.9514 0.5210 37 1 1.0397 4.3696 -3.5942 38 1 2.5186 3.4273 3.2969 39 1 2.0073 4.9706 2.5725 40 1 3.5778 6.4218 1.5108 41 1 5.9657 7.0417 1.2053 42 1 7.7116 5.3612 1.7618 43 1 7.0292 3.1529 2.6109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108652166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:01 Heat of formation + Delta-G solvation = 63.950682 kcal Electronic energy + Delta-G solvation = -25561.801732 eV Core-core repulsion = 22223.711632 eV Total energy + Delta-G solvation = -3338.090100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68663 -40.69458 -37.77532 -36.83087 -35.04272 -33.28815 -32.80025 -32.07221 -30.16222 -29.06951 -27.16429 -25.72484 -24.29926 -24.10471 -23.35239 -22.47551 -20.06084 -18.75988 -17.80219 -17.65609 -17.26193 -16.98051 -16.88623 -16.60636 -16.30622 -15.48030 -15.00998 -14.92929 -14.59278 -14.33225 -14.28701 -14.04955 -13.87619 -13.66598 -13.36826 -13.29253 -12.92633 -12.70526 -12.66695 -12.55479 -12.49155 -12.12048 -11.93712 -11.70959 -11.48735 -11.05431 -10.69872 -10.60454 -10.32583 -10.27111 -9.79878 -9.48122 -8.85428 -8.17820 -6.08172 0.26068 0.50970 1.37179 1.45140 1.49434 2.06082 2.28398 2.37863 2.91470 3.08056 3.38055 3.52124 3.93984 4.07197 4.12629 4.28837 4.35145 4.38402 4.41730 4.54340 4.57747 4.67298 4.83163 4.83591 4.86940 4.90363 4.95302 4.99639 5.01094 5.13847 5.27843 5.31391 5.33249 5.36583 5.63402 5.67315 5.89447 5.91660 6.09007 6.16084 6.23556 6.35633 6.81409 7.19910 7.25443 7.41121 7.85895 8.84504 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.009680 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.051998 B = 2891.982575 C = 4391.333743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 N -0.642 5.642 4 C 0.070 3.930 5 C -0.137 4.137 6 C 0.714 3.286 7 O -0.636 6.636 8 N -0.609 5.609 9 C 0.220 3.780 10 C -0.518 4.518 11 H 0.064 0.936 12 C 0.037 3.963 13 N -0.903 5.903 14 Si 0.924 3.076 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.179 3.821 19 C 0.103 3.897 20 C -0.147 4.147 21 C -0.086 4.086 22 C -0.171 4.171 23 C 0.071 3.929 24 N -0.503 5.503 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.036 0.964 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.171 0.829 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.002 0.998 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.272 0.728 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 2.010 2.873 5.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.001 4.001 3 N -0.379 5.379 4 C -0.051 4.051 5 C -0.194 4.194 6 C 0.418 3.582 7 O -0.519 6.519 8 N -0.343 5.343 9 C 0.101 3.899 10 C -0.557 4.557 11 H 0.082 0.918 12 C -0.163 4.163 13 N -0.544 5.544 14 Si 0.750 3.250 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.054 3.946 19 C -0.035 4.035 20 C -0.168 4.168 21 C -0.112 4.112 22 C -0.191 4.191 23 C -0.086 4.086 24 N -0.213 5.213 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.187 0.813 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.021 0.979 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.181 0.819 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.826 0.836 3.529 5.272 hybrid contribution 1.028 0.865 -1.205 1.805 sum 4.854 1.701 2.324 5.644 Atomic orbital electron populations 1.22098 0.95231 1.02786 1.01185 1.21356 0.94739 0.81753 1.02281 1.47265 1.71413 1.14100 1.05153 1.23142 0.99659 1.00261 0.82003 1.22760 0.96046 1.00723 0.99861 1.15983 0.77001 0.82286 0.82923 1.90739 1.56465 1.66927 1.37752 1.47718 1.62055 1.04608 1.19915 1.19942 0.93689 0.92129 0.84162 1.21622 1.00325 1.42076 0.91634 0.91753 1.25251 0.96905 0.95275 0.98829 1.69722 1.22453 1.47687 1.14503 0.86134 0.80822 0.78260 0.79790 1.19421 1.20623 1.20582 1.20122 0.88762 0.97362 0.88324 1.21740 0.95974 0.90484 0.95332 1.22118 0.98414 0.97412 0.98812 1.21925 0.92317 1.00850 0.96110 1.22410 1.02043 0.94397 1.00249 1.23100 0.92501 0.96587 0.96401 1.67496 1.02072 1.35336 1.16353 0.92798 0.89294 0.94471 0.89993 0.91851 0.93671 0.81322 0.88993 0.95516 0.97939 0.92018 0.95432 0.91781 0.90915 0.87276 0.83858 0.82316 0.81930 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 10.24 71.98 0.74 -4.12 16 2 C 0.12 4.46 6.28 86.38 0.54 5.00 16 3 N -0.64 -28.18 2.45 -839.85 -2.05 -30.23 16 4 C 0.07 3.11 4.99 86.38 0.43 3.54 16 5 C -0.14 -6.30 7.99 71.98 0.57 -5.73 16 6 C 0.71 33.95 6.48 179.05 1.16 35.11 16 7 O -0.64 -33.33 15.65 -3.98 -0.06 -33.39 16 8 N -0.61 -26.74 2.17 -848.56 -1.84 -28.59 16 9 C 0.22 9.85 5.11 85.63 0.44 10.29 16 10 C -0.52 -23.67 5.15 25.60 0.13 -23.53 16 11 H 0.06 3.02 5.20 -2.91 -0.02 3.01 16 12 C 0.04 1.70 3.38 84.66 0.29 1.99 16 13 N -0.90 -43.03 11.40 21.45 0.24 -42.79 16 14 Si 0.92 38.26 27.40 68.60 1.88 40.14 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 18 C 0.18 6.99 5.84 85.63 0.50 7.49 16 19 C 0.10 3.96 5.88 42.56 0.25 4.21 16 20 C -0.15 -4.82 7.89 22.36 0.18 -4.65 16 21 C -0.09 -2.38 10.18 22.47 0.23 -2.16 16 22 C -0.17 -4.56 10.11 22.36 0.23 -4.34 16 23 C 0.07 2.30 11.18 84.67 0.95 3.25 16 24 N -0.50 -20.22 10.27 -183.88 -1.89 -22.11 16 25 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 2.65 7.90 -2.39 -0.02 2.63 16 29 H 0.06 2.43 7.32 -2.38 -0.02 2.42 16 30 H 0.04 1.93 7.78 -2.39 -0.02 1.91 16 31 H 0.17 7.98 1.00 -2.39 0.00 7.98 16 32 H 0.09 4.25 1.47 -2.39 0.00 4.25 16 33 H 0.03 1.32 6.39 -2.39 -0.02 1.30 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.06 3.01 4.97 -2.38 -0.01 3.00 16 36 H 0.03 1.20 7.96 -2.39 -0.02 1.18 16 37 H 0.27 12.47 8.31 -92.71 -0.77 11.70 16 38 H 0.07 3.03 7.30 -2.39 -0.02 3.01 16 39 H 0.11 3.55 7.84 -2.39 -0.02 3.53 16 40 H 0.14 4.34 8.06 -2.92 -0.02 4.31 16 41 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -60.54 329.63 3.92 -56.61 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 1.02 Total: 33.97 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 6.63 Total: 26.38 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -5.54 Total: -123.71 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.06 Total: -33.39 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.88 Total: 40.14 kcal Total: -60.54 3.92 -56.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108652166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.565 kcal (2) G-P(sol) polarization free energy of solvation -60.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds