Wall clock time and date at job start Tue Mar 31 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47456 * 2 1 4 4 C 1.35672 * 117.00233 * 180.02562 * 3 2 1 5 5 C 1.38918 * 119.68285 * 180.02562 * 4 3 2 6 6 C 1.38381 * 119.10755 * 180.02562 * 5 4 3 7 7 C 1.38824 * 118.48953 * 359.97438 * 6 5 4 8 8 C 1.38051 * 119.28671 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.58034 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47342 * 95.00243 * 9 8 7 11 11 C 1.46895 * 110.99989 * 190.00093 * 10 9 8 12 12 C 1.53241 * 109.33538 * 187.25118 * 11 10 9 13 13 N 1.47082 * 108.52509 * 306.16899 * 12 11 10 14 14 C 1.36935 * 120.87800 * 231.18634 * 13 12 11 15 15 H 1.07994 * 120.00243 * 27.12925 * 14 13 12 16 16 C 1.38815 * 119.99552 * 206.84012 * 14 13 12 17 17 N 1.31614 * 119.99986 * 17.18837 * 16 14 13 18 18 Si 1.86797 * 120.00057 * 197.17547 * 16 14 13 19 19 H 1.48508 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47196 * 120.00464 * 18 16 14 21 21 H 1.48497 * 109.47565 * 240.00842 * 18 16 14 22 22 C 1.47072 * 118.23374 * 51.45730 * 13 12 11 23 23 C 1.46908 * 110.99894 * 314.30181 * 10 9 8 24 24 N 1.31957 * 120.83765 * 0.27796 * 8 7 6 25 25 H 1.09000 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46798 * 299.99626 * 1 2 3 27 27 H 1.08999 * 109.47226 * 59.99561 * 1 2 3 28 28 H 1.09014 * 109.46933 * 240.00561 * 2 1 3 29 29 H 1.09004 * 109.47621 * 120.00693 * 2 1 3 30 30 H 1.07992 * 120.44671 * 0.02562 * 5 4 3 31 31 H 1.08004 * 120.75187 * 179.97438 * 6 5 4 32 32 H 1.08003 * 120.35668 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.46889 * 334.99938 * 9 8 7 34 34 H 1.08999 * 109.46899 * 215.00166 * 9 8 7 35 35 H 1.08994 * 109.49506 * 67.29451 * 11 10 9 36 36 H 1.08997 * 109.49438 * 307.21030 * 11 10 9 37 37 H 1.09003 * 109.62622 * 186.45689 * 12 11 10 38 38 H 1.09001 * 109.79122 * 65.97420 * 12 11 10 39 39 H 0.97002 * 120.00194 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.62781 * 68.25550 * 22 13 12 41 41 H 1.09007 * 109.62956 * 188.83247 * 22 13 12 42 42 H 1.09005 * 109.49135 * 292.70628 * 23 10 9 43 43 H 1.09003 * 109.49306 * 52.75396 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8753 2.8116 0.0000 6 6 5.2489 2.9791 -0.0011 7 6 6.0540 1.8481 -0.0022 8 6 5.4646 0.5997 -0.0015 9 6 6.3322 -0.6325 -0.0032 10 7 6.5176 -1.1028 1.3760 11 6 7.5425 -2.1531 1.4408 12 6 7.5777 -2.7411 2.8555 13 7 7.7540 -1.6402 3.8148 14 6 8.7355 -1.6894 4.7684 15 1 9.6338 -2.2617 4.5897 16 6 8.5785 -0.9987 5.9622 17 7 7.3850 -0.5837 6.3303 18 14 10.0611 -0.6585 7.0464 19 1 11.2786 -1.2250 6.4122 20 1 10.2268 0.8078 7.2126 21 1 9.8569 -1.2875 8.3760 22 6 6.8442 -0.4881 3.7265 23 6 6.8415 0.0139 2.2739 24 7 4.1513 0.4717 -0.0055 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8902 29 1 1.8934 -0.5139 0.8899 30 1 3.2194 3.6696 0.0012 31 1 5.6848 3.9673 -0.0012 32 1 7.1297 1.9439 -0.0035 33 1 7.3022 -0.3932 -0.4391 34 1 5.8521 -1.4140 -0.5921 35 1 8.5161 -1.7267 1.1998 36 1 7.3025 -2.9400 0.7257 37 1 8.4109 -3.4386 2.9414 38 1 6.6423 -3.2609 3.0625 39 1 7.2753 -0.1008 7.1644 40 1 5.8379 -0.7933 4.0135 41 1 7.1921 0.3049 4.3887 42 1 7.8250 0.4103 2.0213 43 1 6.0935 0.7989 2.1626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129931530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:29 Heat of formation + Delta-G solvation = 33.646508 kcal Electronic energy + Delta-G solvation = -23616.090772 eV Core-core repulsion = 20276.686585 eV Total energy + Delta-G solvation = -3339.404187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68882 -38.56337 -37.51015 -34.55344 -32.56220 -32.17151 -31.33500 -30.02543 -29.79539 -27.39718 -25.07335 -23.92407 -22.80474 -22.57795 -22.31903 -21.22380 -19.04818 -18.22632 -16.88346 -16.41251 -16.26879 -15.97326 -15.31718 -14.64204 -14.52828 -14.33918 -13.87130 -13.77140 -13.58052 -13.37779 -13.04612 -12.96144 -12.70315 -12.55814 -12.28786 -11.83349 -11.64703 -11.50616 -11.38989 -11.06017 -10.76753 -10.69061 -10.47788 -10.29045 -10.06104 -9.85726 -9.74937 -9.57763 -9.44910 -8.49345 -8.38841 -7.76609 -6.64384 -5.76007 -3.17438 1.15154 1.34571 3.03310 3.37865 3.45624 3.47828 3.74306 4.18607 4.49565 4.55652 4.80126 4.95594 4.97116 5.04643 5.13403 5.20502 5.35401 5.40432 5.46742 5.53220 5.54347 5.67294 5.77048 5.85395 5.88588 5.91959 5.95617 6.06033 6.15575 6.20088 6.26130 6.34730 6.46741 6.55999 6.72233 6.95983 7.26074 7.30080 7.58312 7.67412 7.72606 7.83810 7.98228 8.45470 9.23113 9.86789 10.45769 11.32687 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.003832 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.550428 B = 7305.003525 C = 7317.020099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.323 3.677 5 C -0.199 4.199 6 C -0.041 4.041 7 C -0.205 4.205 8 C 0.186 3.814 9 C 0.100 3.900 10 N -0.522 5.522 11 C 0.045 3.955 12 C 0.149 3.851 13 N -0.596 5.596 14 C -0.251 4.251 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.903 5.903 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.181 3.819 23 C 0.034 3.966 24 N -0.521 5.521 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.026 0.974 39 H 0.253 0.747 40 H 0.025 0.975 41 H 0.087 0.913 42 H 0.025 0.975 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.744 4.687 -15.769 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.218 6.218 4 C 0.144 3.856 5 C -0.219 4.219 6 C -0.066 4.066 7 C -0.226 4.226 8 C 0.049 3.951 9 C -0.028 4.028 10 N -0.247 5.247 11 C -0.084 4.084 12 C 0.022 3.978 13 N -0.319 5.319 14 C -0.381 4.381 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.055 3.945 23 C -0.095 4.095 24 N -0.245 5.245 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.105 0.895 42 H 0.044 0.956 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.817 3.898 -15.449 18.210 hybrid contribution 1.820 1.239 0.398 2.237 sum -6.997 5.137 -15.051 17.375 Atomic orbital electron populations 1.21812 0.93266 1.02817 1.03025 1.22596 0.94420 0.81046 1.02881 1.86198 1.16966 1.30780 1.87860 1.19768 0.83996 0.89869 0.92000 1.21002 0.95836 0.95683 1.09422 1.21335 0.92298 0.99280 0.93709 1.21855 1.01439 0.92805 1.06492 1.20746 0.88672 0.94450 0.91268 1.21073 0.95728 0.93282 0.92743 1.62104 1.46450 1.11915 1.04249 1.22645 0.91871 0.93743 1.00124 1.20969 0.98634 0.90802 0.87380 1.44158 1.36989 1.15882 1.34864 1.19237 0.95297 1.29465 0.94096 0.91584 1.25028 0.96192 1.02158 0.96361 1.70045 1.20042 1.41889 1.22775 0.86240 0.82521 0.77764 0.80365 1.20301 1.21611 1.21711 1.20924 0.93190 0.90978 0.89458 1.23062 0.97483 0.92110 0.96889 1.67127 1.05950 1.32925 1.18499 0.90350 0.91679 0.91956 0.91754 0.91145 0.84431 0.84237 0.84804 0.93608 0.89548 0.95252 0.91827 0.92538 0.95635 0.93691 0.95712 0.89463 0.95640 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.07 0.79 6.03 37.16 0.22 1.02 16 3 O -0.31 -4.33 10.12 -18.72 -0.19 -4.52 16 4 C 0.32 4.78 7.49 -17.12 -0.13 4.66 16 5 C -0.20 -2.50 10.04 -39.28 -0.39 -2.89 16 6 C -0.04 -0.47 10.17 -39.31 -0.40 -0.87 16 7 C -0.21 -2.71 8.20 -39.43 -0.32 -3.03 16 8 C 0.19 2.82 4.81 -82.61 -0.40 2.43 16 9 C 0.10 1.51 5.59 -4.98 -0.03 1.48 16 10 N -0.52 -9.66 4.77 -235.47 -1.12 -10.78 16 11 C 0.05 0.82 5.58 -3.70 -0.02 0.80 16 12 C 0.15 3.22 6.69 -3.60 -0.02 3.20 16 13 N -0.60 -15.40 3.03 -171.74 -0.52 -15.92 16 14 C -0.25 -7.01 9.63 -15.06 -0.15 -7.15 16 15 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 16 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 17 N -0.90 -26.69 11.16 55.49 0.62 -26.07 16 18 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.18 4.53 5.45 -3.37 -0.02 4.51 16 23 C 0.03 0.68 4.89 -3.46 -0.02 0.67 16 24 N -0.52 -8.33 9.13 -9.55 -0.09 -8.42 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.76 8.10 -51.92 -0.42 0.34 16 29 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.05 0.62 7.98 -51.93 -0.41 0.21 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.18 5.74 -51.93 -0.30 0.88 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -31.65 346.51 -9.39 -41.04 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.91 Total: -1.14 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.38 Total: 3.78 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -1.11 Total: -61.19 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.19 Total: -4.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.65 -9.39 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129931530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.690 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds