Wall clock time and date at job start Tue Mar 31 2020 06:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47456 * 2 1 4 4 C 1.35672 * 117.00233 * 180.02562 * 3 2 1 5 5 C 1.38918 * 119.68285 * 180.02562 * 4 3 2 6 6 C 1.38381 * 119.10755 * 180.02562 * 5 4 3 7 7 C 1.38824 * 118.48953 * 359.97438 * 6 5 4 8 8 C 1.38051 * 119.28671 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.58034 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47342 * 95.00243 * 9 8 7 11 11 C 1.46895 * 110.99989 * 190.00093 * 10 9 8 12 12 C 1.53241 * 109.33538 * 187.25118 * 11 10 9 13 13 N 1.47082 * 108.52509 * 306.16899 * 12 11 10 14 14 C 1.36935 * 120.87800 * 231.18634 * 13 12 11 15 15 H 1.07994 * 120.00243 * 27.12925 * 14 13 12 16 16 C 1.38815 * 119.99552 * 206.84012 * 14 13 12 17 17 N 1.31614 * 119.99986 * 17.18837 * 16 14 13 18 18 Si 1.86797 * 120.00057 * 197.17547 * 16 14 13 19 19 H 1.48508 * 109.47149 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47196 * 120.00464 * 18 16 14 21 21 H 1.48497 * 109.47565 * 240.00842 * 18 16 14 22 22 C 1.47072 * 118.23374 * 51.45730 * 13 12 11 23 23 C 1.46908 * 110.99894 * 314.30181 * 10 9 8 24 24 N 1.31957 * 120.83765 * 0.27796 * 8 7 6 25 25 H 1.09000 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46798 * 299.99626 * 1 2 3 27 27 H 1.08999 * 109.47226 * 59.99561 * 1 2 3 28 28 H 1.09014 * 109.46933 * 240.00561 * 2 1 3 29 29 H 1.09004 * 109.47621 * 120.00693 * 2 1 3 30 30 H 1.07992 * 120.44671 * 0.02562 * 5 4 3 31 31 H 1.08004 * 120.75187 * 179.97438 * 6 5 4 32 32 H 1.08003 * 120.35668 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.46889 * 334.99938 * 9 8 7 34 34 H 1.08999 * 109.46899 * 215.00166 * 9 8 7 35 35 H 1.08994 * 109.49506 * 67.29451 * 11 10 9 36 36 H 1.08997 * 109.49438 * 307.21030 * 11 10 9 37 37 H 1.09003 * 109.62622 * 186.45689 * 12 11 10 38 38 H 1.09001 * 109.79122 * 65.97420 * 12 11 10 39 39 H 0.97002 * 120.00194 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.62781 * 68.25550 * 22 13 12 41 41 H 1.09007 * 109.62956 * 188.83247 * 22 13 12 42 42 H 1.09005 * 109.49135 * 292.70628 * 23 10 9 43 43 H 1.09003 * 109.49306 * 52.75396 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8753 2.8116 0.0000 6 6 5.2489 2.9791 -0.0011 7 6 6.0540 1.8481 -0.0022 8 6 5.4646 0.5997 -0.0015 9 6 6.3322 -0.6325 -0.0032 10 7 6.5176 -1.1028 1.3760 11 6 7.5425 -2.1531 1.4408 12 6 7.5777 -2.7411 2.8555 13 7 7.7540 -1.6402 3.8148 14 6 8.7355 -1.6894 4.7684 15 1 9.6338 -2.2617 4.5897 16 6 8.5785 -0.9987 5.9622 17 7 7.3850 -0.5837 6.3303 18 14 10.0611 -0.6585 7.0464 19 1 11.2786 -1.2250 6.4122 20 1 10.2268 0.8078 7.2126 21 1 9.8569 -1.2875 8.3760 22 6 6.8442 -0.4881 3.7265 23 6 6.8415 0.0139 2.2739 24 7 4.1513 0.4717 -0.0055 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8902 29 1 1.8934 -0.5139 0.8899 30 1 3.2194 3.6696 0.0012 31 1 5.6848 3.9673 -0.0012 32 1 7.1297 1.9439 -0.0035 33 1 7.3022 -0.3932 -0.4391 34 1 5.8521 -1.4140 -0.5921 35 1 8.5161 -1.7267 1.1998 36 1 7.3025 -2.9400 0.7257 37 1 8.4109 -3.4386 2.9414 38 1 6.6423 -3.2609 3.0625 39 1 7.2753 -0.1008 7.1644 40 1 5.8379 -0.7933 4.0135 41 1 7.1921 0.3049 4.3887 42 1 7.8250 0.4103 2.0213 43 1 6.0935 0.7989 2.1626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129931530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:28 Heat of formation + Delta-G solvation = 11.471593 kcal Electronic energy + Delta-G solvation = -23617.052349 eV Core-core repulsion = 20276.686585 eV Total energy + Delta-G solvation = -3340.365764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73903 -39.87941 -38.82292 -36.28031 -33.87527 -33.26379 -32.78115 -31.66321 -31.15127 -28.91687 -26.67391 -25.05839 -24.27139 -24.25450 -23.40737 -22.43035 -20.80839 -19.25801 -18.75790 -17.56020 -17.35918 -17.03181 -16.92972 -16.29919 -15.94788 -15.63721 -15.34837 -15.14550 -15.04071 -14.67760 -14.58001 -14.52093 -13.79120 -13.40288 -13.35159 -13.23430 -12.98300 -12.87444 -12.83106 -12.63943 -12.42412 -12.30825 -12.06650 -11.92190 -11.73948 -11.56711 -11.47141 -10.83599 -10.61975 -10.53033 -9.47234 -9.19798 -8.70142 -7.88473 -5.34172 0.11338 0.35468 1.46067 1.47263 1.58570 2.07799 2.50208 2.64299 3.13170 3.17494 3.27968 3.66349 3.79551 4.06045 4.08113 4.16067 4.17413 4.25058 4.28499 4.34695 4.42557 4.47465 4.49380 4.63081 4.64923 4.68972 4.82418 4.85619 4.88517 4.94985 5.00142 5.04600 5.16608 5.20223 5.24492 5.33973 5.52356 5.60304 5.62979 6.14426 6.20935 6.27665 6.36015 6.92320 7.11198 7.81827 8.37208 9.18721 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.003832 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.550428 B = 7305.003525 C = 7317.020099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 O -0.318 6.318 4 C 0.298 3.702 5 C -0.198 4.198 6 C -0.035 4.035 7 C -0.207 4.207 8 C 0.160 3.840 9 C 0.106 3.894 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.143 3.857 13 N -0.613 5.613 14 C -0.263 4.263 15 H 0.072 0.928 16 C -0.053 4.053 17 N -0.939 5.939 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.293 1.293 22 C 0.190 3.810 23 C 0.059 3.941 24 N -0.545 5.545 25 H 0.096 0.904 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.160 0.840 31 H 0.177 0.823 32 H 0.150 0.850 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.011 0.989 39 H 0.250 0.750 40 H -0.014 1.014 41 H 0.056 0.944 42 H 0.029 0.971 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 5.497 -17.485 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.011 4.011 3 O -0.226 6.226 4 C 0.119 3.881 5 C -0.218 4.218 6 C -0.060 4.060 7 C -0.228 4.228 8 C 0.024 3.976 9 C -0.022 4.022 10 N -0.264 5.264 11 C -0.072 4.072 12 C 0.017 3.983 13 N -0.337 5.337 14 C -0.393 4.393 15 H 0.089 0.911 16 C -0.248 4.248 17 N -0.585 5.585 18 Si 0.798 3.202 19 H -0.188 1.188 20 H -0.216 1.216 21 H -0.220 1.220 22 C 0.064 3.936 23 C -0.070 4.070 24 N -0.270 5.270 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.178 0.822 31 H 0.194 0.806 32 H 0.167 0.833 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.029 0.971 39 H 0.059 0.941 40 H 0.004 0.996 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.869 4.685 -17.205 19.491 hybrid contribution 1.463 0.949 0.899 1.962 sum -6.406 5.635 -16.306 18.403 Atomic orbital electron populations 1.21811 0.90778 1.04143 1.03417 1.22687 0.96342 0.80352 1.01683 1.86195 1.16871 1.31584 1.87982 1.20169 0.84231 0.90680 0.93046 1.21386 0.96814 0.95518 1.08123 1.21786 0.91743 1.00542 0.91919 1.22110 1.02458 0.92577 1.05645 1.20875 0.88573 0.95268 0.92922 1.21074 0.96945 0.93794 0.90341 1.61967 1.46663 1.11501 1.06279 1.22492 0.92187 0.94438 0.98054 1.21148 0.98193 0.90153 0.88769 1.44439 1.36682 1.17274 1.35332 1.19614 0.95960 1.29167 0.94585 0.91062 1.25841 0.98733 1.02333 0.97875 1.70219 1.22205 1.42937 1.23174 0.85166 0.79573 0.77291 0.78167 1.18806 1.21581 1.21986 1.20634 0.90763 0.90075 0.92160 1.22603 0.97765 0.92567 0.94108 1.67045 1.06620 1.34016 1.19283 0.88566 0.91826 0.90935 0.91887 0.93386 0.82199 0.80551 0.83251 0.91371 0.88803 0.94727 0.88439 0.91594 0.97148 0.94129 0.99587 0.92579 0.95248 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.06 1.57 6.03 71.98 0.43 2.00 16 3 O -0.32 -8.86 10.12 -89.89 -0.91 -9.76 16 4 C 0.30 8.67 7.49 84.79 0.63 9.31 16 5 C -0.20 -4.61 10.04 22.47 0.23 -4.38 16 6 C -0.03 -0.71 10.17 22.44 0.23 -0.48 16 7 C -0.21 -4.99 8.20 22.37 0.18 -4.81 16 8 C 0.16 4.65 4.81 42.50 0.20 4.86 16 9 C 0.11 2.98 5.59 85.56 0.48 3.46 16 10 N -0.54 -19.31 4.77 -898.88 -4.29 -23.60 16 11 C 0.06 1.95 5.58 86.38 0.48 2.43 16 12 C 0.14 6.15 6.69 86.35 0.58 6.73 16 13 N -0.61 -32.17 3.03 -697.26 -2.11 -34.29 16 14 C -0.26 -14.79 9.63 84.03 0.81 -13.98 16 15 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 16 C -0.05 -3.01 4.93 84.86 0.42 -2.59 16 17 N -0.94 -57.28 11.16 21.65 0.24 -57.04 16 18 Si 0.97 45.29 29.59 68.60 2.03 47.32 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 C 0.19 9.84 5.45 86.50 0.47 10.31 16 23 C 0.06 2.38 4.89 86.53 0.42 2.80 16 24 N -0.55 -17.24 9.13 -296.99 -2.71 -19.96 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.51 8.10 -2.38 -0.02 1.49 16 29 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 33 H 0.07 1.63 7.98 -2.38 -0.02 1.61 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.10 2.70 8.11 -2.39 -0.02 2.68 16 37 H 0.07 2.66 7.95 -2.39 -0.02 2.64 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 40 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H 0.06 3.22 6.12 -2.38 -0.01 3.21 16 42 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 2.48 5.74 -2.39 -0.01 2.47 16 Total: -1.00 -70.40 346.51 -0.46 -70.86 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.98 Total: 12.52 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.31 Total: 13.95 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -8.87 Total: -134.88 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.91 Total: -9.76 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.40 -0.46 -70.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129931530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.332 kcal (2) G-P(sol) polarization free energy of solvation -70.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds