Wall clock time and date at job start Tue Mar 31 2020 06:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47321 * 2 1 4 4 C 1.46506 * 119.99783 * 270.00100 * 3 2 1 5 5 C 1.50698 * 109.46979 * 269.99697 * 4 3 2 6 6 H 1.07996 * 119.99949 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99555 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00010 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99618 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47317 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47216 * 119.99996 * 9 7 5 12 12 H 1.48506 * 109.46864 * 240.00081 * 9 7 5 13 13 C 1.34774 * 120.00221 * 89.99832 * 3 2 1 14 14 O 1.21279 * 119.99915 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99816 * 0.02562 * 13 3 2 16 16 N 1.46907 * 109.47015 * 180.02562 * 15 13 3 17 17 C 1.46902 * 110.99975 * 66.04813 * 16 15 13 18 18 C 1.46904 * 111.00099 * 190.00413 * 16 15 13 19 19 C 1.50695 * 109.47190 * 170.00111 * 18 16 15 20 20 C 1.38678 * 120.41675 * 270.25239 * 19 18 16 21 21 C 1.38627 * 118.41930 * 180.24221 * 20 19 18 22 22 C 1.38232 * 119.16085 * 359.75178 * 21 20 19 23 23 N 1.31857 * 120.76541 * 359.97438 * 22 21 20 24 24 C 1.31889 * 121.72235 * 0.02562 * 23 22 21 25 25 H 1.09010 * 109.47012 * 300.00013 * 1 2 3 26 26 H 1.09001 * 109.47127 * 59.99915 * 1 2 3 27 27 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47107 * 240.00120 * 2 1 3 29 29 H 1.08994 * 109.47242 * 119.99391 * 2 1 3 30 30 H 1.09003 * 109.47104 * 30.00057 * 4 3 2 31 31 H 1.09001 * 109.46795 * 149.99248 * 4 3 2 32 32 H 0.97004 * 119.99742 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47112 * 60.00510 * 15 13 3 34 34 H 1.08994 * 109.47892 * 300.00270 * 15 13 3 35 35 H 1.09002 * 109.46973 * 183.95386 * 17 16 15 36 36 H 1.08998 * 109.46823 * 303.95614 * 17 16 15 37 37 H 1.08996 * 109.47167 * 63.95467 * 17 16 15 38 38 H 1.09001 * 109.46737 * 49.99930 * 18 16 15 39 39 H 1.08996 * 109.46745 * 289.99849 * 18 16 15 40 40 H 1.07994 * 120.78944 * 359.96926 * 20 19 18 41 41 H 1.07997 * 120.42083 * 179.72800 * 21 20 19 42 42 H 1.07999 * 119.61954 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.61237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1490 2.3896 -2.8781 8 7 3.3489 3.1256 -3.6182 9 14 5.9130 2.0955 -3.4177 10 1 6.6008 1.2405 -2.4170 11 1 5.9200 1.4162 -4.7382 12 1 6.6208 3.3965 -3.5264 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3061 2.4722 16 7 2.3098 2.2064 3.5888 17 6 1.3824 3.3450 3.6271 18 6 2.3068 1.4817 4.8666 19 6 2.8708 2.3673 5.9477 20 6 4.2315 2.3690 6.2152 21 6 4.7049 3.1959 7.2220 22 6 3.8120 3.9896 7.9174 23 7 2.5249 3.9662 7.6321 24 6 2.0393 3.1921 6.6810 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0954 3.1410 -1.1385 32 1 3.6748 3.5155 -4.4445 33 1 2.6229 0.4189 2.5298 34 1 0.9445 1.0115 2.5302 35 1 1.6824 4.0314 4.4189 36 1 1.4044 3.8638 2.6687 37 1 0.3724 2.9846 3.8220 38 1 2.9183 0.5839 4.7766 39 1 1.2852 1.2013 5.1228 40 1 4.9057 1.7377 5.6555 41 1 5.7580 3.2195 7.4604 42 1 4.1728 4.6370 8.7030 43 1 0.9790 3.1997 6.4761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132507894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:14 Heat of formation + Delta-G solvation = 12.403627 kcal Electronic energy + Delta-G solvation = -23175.885272 eV Core-core repulsion = 19835.559924 eV Total energy + Delta-G solvation = -3340.325348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39187 -39.26186 -36.88166 -35.18514 -32.91566 -32.67288 -31.73316 -30.09970 -28.61243 -27.34466 -26.49167 -23.87411 -23.49129 -23.01190 -22.22356 -21.10893 -18.32565 -17.21212 -16.73355 -16.52661 -16.31183 -15.87540 -15.48222 -15.13342 -14.76148 -14.27820 -14.17081 -13.75260 -13.63525 -13.37151 -13.16598 -13.05556 -12.79270 -12.49518 -12.04906 -11.92124 -11.84826 -11.62464 -11.45151 -11.24130 -11.15931 -10.88300 -10.71950 -10.52718 -10.10961 -9.90668 -9.59049 -9.58161 -9.17141 -8.88397 -8.42498 -8.18544 -7.62522 -6.03104 -4.07405 0.94851 1.18238 3.30538 3.37728 3.40406 3.46676 3.51074 3.85763 4.26282 4.30317 4.46963 4.60971 4.67947 4.87395 4.89713 5.03755 5.20007 5.24408 5.26969 5.31540 5.38693 5.47697 5.51680 5.59467 5.62993 5.67539 5.72570 5.77128 5.99303 6.00681 6.17093 6.21258 6.32050 6.45376 6.55463 6.90068 7.06616 7.14549 7.46338 7.57950 7.82806 7.94001 8.25442 8.45221 8.93081 9.15069 9.57843 11.04986 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.003621 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.179310 B = 7731.088754 C = 8620.545075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.037 3.963 16 N -0.518 5.518 17 C 0.018 3.982 18 C 0.096 3.904 19 C -0.123 4.123 20 C -0.053 4.053 21 C -0.174 4.174 22 C 0.092 3.908 23 N -0.488 5.488 24 C 0.104 3.896 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.019 0.981 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.153 0.847 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -6.702 18.911 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.094 4.094 16 N -0.242 5.242 17 C -0.130 4.130 18 C -0.032 4.032 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.193 4.193 22 C -0.065 4.065 23 N -0.196 5.196 24 C -0.053 4.053 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.037 0.963 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.170 0.830 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.775 -5.258 19.108 20.174 hybrid contribution 0.800 -1.069 -0.828 1.572 sum -2.975 -6.328 18.279 19.571 Atomic orbital electron populations 1.22223 0.96912 1.01344 1.02238 1.21395 0.93390 0.84380 1.02591 1.48269 1.64077 1.13219 1.07693 1.19245 0.96222 0.93588 0.78075 1.21479 0.96954 1.31711 1.06124 0.92427 1.24938 0.97823 0.94961 0.96441 1.69943 1.35587 1.33600 1.14327 0.86451 0.84712 0.78056 0.78247 1.19811 1.21016 1.20898 1.20087 0.78879 0.87148 0.84682 1.90645 1.44642 1.17864 1.86729 1.22099 1.00417 0.96061 0.90814 1.61617 1.52714 1.09022 1.00819 1.22620 0.91845 0.93645 1.04901 1.21008 0.99537 0.95118 0.87524 1.20735 0.94705 0.99336 0.97789 1.21513 0.94850 0.96707 0.94882 1.22157 1.01382 0.98197 0.97605 1.22739 0.88768 0.96710 0.98256 1.67683 1.15656 1.20194 1.16069 1.22653 1.00110 0.91393 0.91163 0.93272 0.92003 0.92209 0.89935 0.91926 0.95118 0.93976 0.92819 0.88500 0.92480 0.91681 0.88790 0.96301 0.89642 0.93638 0.84638 0.84816 0.82968 0.83234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.15 0.38 -1.79 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.38 2.46 -175.06 -0.43 -12.81 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 5 C -0.52 -14.84 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.51 10.32 7.36 -10.99 -0.08 10.24 16 14 O -0.52 -13.04 13.91 5.56 0.08 -12.97 16 15 C 0.04 0.54 4.00 -4.98 -0.02 0.52 16 16 N -0.52 -7.50 4.49 -245.83 -1.10 -8.60 16 17 C 0.02 0.26 8.79 60.07 0.53 0.78 16 18 C 0.10 1.03 5.14 -4.98 -0.03 1.01 16 19 C -0.12 -1.39 4.89 -104.48 -0.51 -1.90 16 20 C -0.05 -0.57 9.86 -39.28 -0.39 -0.95 16 21 C -0.17 -1.67 10.11 -39.44 -0.40 -2.07 16 22 C 0.09 0.95 11.18 -17.54 -0.20 0.75 16 23 N -0.49 -5.99 10.36 -13.25 -0.14 -6.12 16 24 C 0.10 1.20 9.15 -17.55 -0.16 1.03 16 25 H 0.05 0.60 7.22 -51.92 -0.38 0.22 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.33 8.07 -51.93 -0.42 0.92 16 29 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.10 1.23 7.19 -51.93 -0.37 0.86 16 34 H 0.06 0.71 7.17 -51.93 -0.37 0.34 16 35 H 0.06 0.92 6.17 -51.93 -0.32 0.60 16 36 H 0.09 1.70 5.83 -51.93 -0.30 1.39 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 0.80 7.89 -51.93 -0.41 0.39 16 39 H 0.05 0.42 8.07 -51.93 -0.42 0.00 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.15 1.47 8.04 -52.49 -0.42 1.05 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -34.36 354.34 -8.52 -42.87 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.63 Total: -0.83 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.34 Total: 2.11 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.93 Total: -53.47 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.36 -8.52 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132507894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.276 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds