Wall clock time and date at job start Tue Mar 31 2020 06:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47321 * 2 1 4 4 C 1.46506 * 119.99783 * 270.00100 * 3 2 1 5 5 C 1.50698 * 109.46979 * 269.99697 * 4 3 2 6 6 H 1.07996 * 119.99949 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99555 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00010 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99618 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47317 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47216 * 119.99996 * 9 7 5 12 12 H 1.48506 * 109.46864 * 240.00081 * 9 7 5 13 13 C 1.34774 * 120.00221 * 89.99832 * 3 2 1 14 14 O 1.21279 * 119.99915 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99816 * 0.02562 * 13 3 2 16 16 N 1.46907 * 109.47015 * 180.02562 * 15 13 3 17 17 C 1.46902 * 110.99975 * 66.04813 * 16 15 13 18 18 C 1.46904 * 111.00099 * 190.00413 * 16 15 13 19 19 C 1.50695 * 109.47190 * 170.00111 * 18 16 15 20 20 C 1.38678 * 120.41675 * 270.25239 * 19 18 16 21 21 C 1.38627 * 118.41930 * 180.24221 * 20 19 18 22 22 C 1.38232 * 119.16085 * 359.75178 * 21 20 19 23 23 N 1.31857 * 120.76541 * 359.97438 * 22 21 20 24 24 C 1.31889 * 121.72235 * 0.02562 * 23 22 21 25 25 H 1.09010 * 109.47012 * 300.00013 * 1 2 3 26 26 H 1.09001 * 109.47127 * 59.99915 * 1 2 3 27 27 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47107 * 240.00120 * 2 1 3 29 29 H 1.08994 * 109.47242 * 119.99391 * 2 1 3 30 30 H 1.09003 * 109.47104 * 30.00057 * 4 3 2 31 31 H 1.09001 * 109.46795 * 149.99248 * 4 3 2 32 32 H 0.97004 * 119.99742 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47112 * 60.00510 * 15 13 3 34 34 H 1.08994 * 109.47892 * 300.00270 * 15 13 3 35 35 H 1.09002 * 109.46973 * 183.95386 * 17 16 15 36 36 H 1.08998 * 109.46823 * 303.95614 * 17 16 15 37 37 H 1.08996 * 109.47167 * 63.95467 * 17 16 15 38 38 H 1.09001 * 109.46737 * 49.99930 * 18 16 15 39 39 H 1.08996 * 109.46745 * 289.99849 * 18 16 15 40 40 H 1.07994 * 120.78944 * 359.96926 * 20 19 18 41 41 H 1.07997 * 120.42083 * 179.72800 * 21 20 19 42 42 H 1.07999 * 119.61954 * 180.02562 * 22 21 20 43 43 H 1.08002 * 119.61237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1490 2.3896 -2.8781 8 7 3.3489 3.1256 -3.6182 9 14 5.9130 2.0955 -3.4177 10 1 6.6008 1.2405 -2.4170 11 1 5.9200 1.4162 -4.7382 12 1 6.6208 3.3965 -3.5264 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3061 2.4722 16 7 2.3098 2.2064 3.5888 17 6 1.3824 3.3450 3.6271 18 6 2.3068 1.4817 4.8666 19 6 2.8708 2.3673 5.9477 20 6 4.2315 2.3690 6.2152 21 6 4.7049 3.1959 7.2220 22 6 3.8120 3.9896 7.9174 23 7 2.5249 3.9662 7.6321 24 6 2.0393 3.1921 6.6810 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0954 3.1410 -1.1385 32 1 3.6748 3.5155 -4.4445 33 1 2.6229 0.4189 2.5298 34 1 0.9445 1.0115 2.5302 35 1 1.6824 4.0314 4.4189 36 1 1.4044 3.8638 2.6687 37 1 0.3724 2.9846 3.8220 38 1 2.9183 0.5839 4.7766 39 1 1.2852 1.2013 5.1228 40 1 4.9057 1.7377 5.6555 41 1 5.7580 3.2195 7.4604 42 1 4.1728 4.6370 8.7030 43 1 0.9790 3.1997 6.4761 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132507894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:14 Heat of formation + Delta-G solvation = -11.450367 kcal Electronic energy + Delta-G solvation = -23176.919658 eV Core-core repulsion = 19835.559924 eV Total energy + Delta-G solvation = -3341.359735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25363 -40.69886 -38.02927 -36.77836 -34.90292 -33.63637 -32.56848 -31.58547 -30.05045 -28.40950 -28.05351 -25.25382 -24.47983 -24.29382 -23.57120 -22.07307 -19.84729 -18.61876 -18.08812 -17.86433 -17.34396 -17.26662 -16.69307 -16.47843 -16.02574 -15.73612 -15.48751 -14.90279 -14.62150 -14.58252 -14.32585 -14.14051 -13.93656 -13.81040 -13.57620 -13.27666 -13.10584 -12.88615 -12.74549 -12.65960 -12.55331 -12.46114 -12.34784 -12.13806 -11.80075 -11.65824 -10.72171 -10.64318 -10.49230 -10.35078 -9.96305 -9.40947 -9.19674 -8.21406 -6.36018 0.16874 0.39254 1.36009 1.38852 1.50490 1.91420 2.25992 2.41775 2.81740 3.07981 3.21980 3.56064 3.73823 3.82164 3.96311 4.12658 4.12715 4.15098 4.25555 4.36054 4.44207 4.47151 4.49489 4.60269 4.67079 4.71642 4.77324 4.90925 4.96061 5.00596 5.07596 5.12515 5.23335 5.23951 5.39515 5.40850 5.60584 5.79355 5.87155 5.95540 6.08332 6.09399 6.73157 6.87885 7.04307 7.30812 7.58890 8.85597 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.003621 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.179310 B = 7731.088754 C = 8620.545075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.495 3.505 14 O -0.581 6.581 15 C 0.053 3.947 16 N -0.542 5.542 17 C 0.027 3.973 18 C 0.101 3.899 19 C -0.134 4.134 20 C -0.067 4.067 21 C -0.174 4.174 22 C 0.082 3.918 23 N -0.515 5.515 24 C 0.092 3.908 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.020 0.980 31 H -0.007 1.007 32 H 0.266 0.734 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.043 0.957 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.146 0.854 41 H 0.159 0.841 42 H 0.176 0.824 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -9.204 20.610 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.283 3.717 14 O -0.461 6.461 15 C -0.077 4.077 16 N -0.267 5.267 17 C -0.121 4.121 18 C -0.026 4.026 19 C -0.136 4.136 20 C -0.093 4.093 21 C -0.193 4.193 22 C -0.075 4.075 23 N -0.224 5.224 24 C -0.065 4.065 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.037 0.963 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.164 0.836 41 H 0.177 0.823 42 H 0.193 0.807 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.217 -7.816 20.831 22.480 hybrid contribution 0.606 -0.256 -1.312 1.468 sum -2.611 -8.072 19.519 21.283 Atomic orbital electron populations 1.22152 0.94747 1.03448 1.01506 1.21744 0.95146 0.81368 1.03998 1.48298 1.64242 1.15164 1.06126 1.18639 0.95147 0.91354 0.80562 1.21756 0.97941 1.31716 1.06338 0.92821 1.25874 1.02377 0.94547 0.96528 1.70065 1.37707 1.34420 1.14820 0.85368 0.79065 0.77947 0.78422 1.18978 1.19385 1.20976 1.21245 0.77350 0.86719 0.86366 1.90621 1.47142 1.20624 1.87732 1.22004 1.02847 0.95671 0.87189 1.61500 1.53195 1.09554 1.02439 1.22408 0.93425 0.93915 1.02338 1.21069 1.01239 0.95012 0.85252 1.20854 0.95027 0.99667 0.98065 1.21810 0.95031 0.97145 0.95321 1.22463 1.02630 0.97329 0.96878 1.23208 0.88398 0.97057 0.98829 1.67688 1.16827 1.20996 1.16884 1.22868 1.00813 0.91500 0.91285 0.92207 0.94583 0.88577 0.91140 0.87867 0.96250 0.98912 0.92503 0.85662 0.89305 0.91821 0.93075 0.93844 0.87763 0.91432 0.83635 0.82297 0.80710 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.00 16 2 C 0.10 2.87 5.93 86.38 0.51 3.39 16 3 N -0.61 -25.24 2.46 -826.16 -2.03 -27.27 16 4 C 0.26 14.40 5.16 85.63 0.44 14.84 16 5 C -0.54 -31.36 9.39 25.60 0.24 -31.12 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 9 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 C 0.49 20.22 7.36 87.66 0.65 20.86 16 14 O -0.58 -30.36 13.91 -3.03 -0.04 -30.40 16 15 C 0.05 1.40 4.00 85.55 0.34 1.74 16 16 N -0.54 -14.64 4.49 -931.65 -4.18 -18.83 16 17 C 0.03 0.78 8.79 127.69 1.12 1.90 16 18 C 0.10 1.85 5.14 85.55 0.44 2.29 16 19 C -0.13 -2.75 4.89 -19.77 -0.10 -2.85 16 20 C -0.07 -1.30 9.86 22.47 0.22 -1.08 16 21 C -0.17 -3.01 10.11 22.36 0.23 -2.78 16 22 C 0.08 1.57 11.18 84.69 0.95 2.51 16 23 N -0.52 -12.16 10.36 -195.83 -2.03 -14.19 16 24 C 0.09 2.00 9.15 84.67 0.77 2.78 16 25 H 0.06 1.27 7.22 -2.38 -0.02 1.25 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 29 H 0.10 2.15 6.44 -2.39 -0.02 2.13 16 30 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 31 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.13 2.61 7.19 -2.39 -0.02 2.59 16 34 H 0.09 1.81 7.17 -2.39 -0.02 1.79 16 35 H 0.06 1.80 6.17 -2.39 -0.01 1.78 16 36 H 0.05 1.92 5.83 -2.39 -0.01 1.91 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.10 1.52 7.89 -2.39 -0.02 1.50 16 39 H 0.07 0.96 8.07 -2.39 -0.02 0.94 16 40 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 42 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.16 2.92 8.04 -2.91 -0.02 2.89 16 Total: -1.00 -79.70 354.34 2.03 -77.67 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.99 Total: 12.08 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 7.02 Total: 10.26 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -7.96 Total: -117.05 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.04 Total: -30.40 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -79.70 2.03 -77.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132507894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.223 kcal (2) G-P(sol) polarization free energy of solvation -79.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds