Wall clock time and date at job start Tue Mar 31 2020 06:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.47217 * 2 1 4 4 C 1.46504 * 119.99787 * 264.49650 * 3 2 1 5 5 C 1.50694 * 109.47375 * 269.99761 * 4 3 2 6 6 H 1.08004 * 119.99594 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00175 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99777 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99712 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47394 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46703 * 120.00344 * 9 7 5 12 12 H 1.48500 * 109.46650 * 239.99603 * 9 7 5 13 13 C 1.34777 * 119.99775 * 84.49605 * 3 2 1 14 14 O 1.21598 * 119.99521 * 185.91787 * 13 3 2 15 15 C 1.47422 * 120.00144 * 5.91971 * 13 3 2 16 16 C 1.39979 * 120.61221 * 54.02843 * 15 13 3 17 17 C 1.38323 * 118.36964 * 180.23873 * 16 15 13 18 18 C 1.38378 * 119.50887 * 359.51190 * 17 16 15 19 19 N 1.31852 * 121.21380 * 0.25043 * 18 17 16 20 20 C 1.32425 * 121.77668 * 0.02562 * 19 18 17 21 21 N 1.38274 * 119.82307 * 179.97438 * 20 19 18 22 22 C 1.46495 * 119.99952 * 355.04610 * 21 20 19 23 23 C 1.53005 * 109.46976 * 85.00280 * 22 21 20 24 24 C 1.53001 * 109.47178 * 204.99720 * 22 21 20 25 25 H 1.09003 * 109.47048 * 299.99856 * 1 2 3 26 26 H 1.08993 * 109.47204 * 59.99736 * 1 2 3 27 27 H 1.08998 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47215 * 240.00631 * 2 1 3 29 29 H 1.08998 * 109.47660 * 120.00321 * 2 1 3 30 30 H 1.08998 * 109.47007 * 30.00490 * 4 3 2 31 31 H 1.09002 * 109.46463 * 149.99887 * 4 3 2 32 32 H 0.97000 * 119.99799 * 179.97438 * 8 7 5 33 33 H 1.08003 * 120.81313 * 0.02562 * 16 15 13 34 34 H 1.07999 * 120.24857 * 179.78130 * 17 16 15 35 35 H 1.08002 * 119.39328 * 180.22908 * 18 17 16 36 36 H 0.96996 * 119.99881 * 175.04450 * 21 20 19 37 37 H 1.08999 * 109.47478 * 324.99595 * 22 21 20 38 38 H 1.08998 * 109.46854 * 180.02562 * 23 22 21 39 39 H 1.09002 * 109.46986 * 299.99364 * 23 22 21 40 40 H 1.08996 * 109.47414 * 59.99880 * 23 22 21 41 41 H 1.09002 * 109.46802 * 59.99762 * 24 22 21 42 42 H 1.09000 * 109.47402 * 180.02562 * 24 22 21 43 43 H 1.09003 * 109.46969 * 300.00767 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3772 2.0313 -1.2629 5 6 3.8336 1.7828 -1.5597 6 1 4.4320 1.1987 -0.8761 7 6 4.4023 2.3011 -2.7039 8 7 3.6737 3.0128 -3.5359 9 14 6.2074 1.9924 -3.0720 10 1 6.8003 1.1699 -1.9871 11 1 6.3328 1.2724 -4.3648 12 1 6.9242 3.2903 -3.1567 13 6 2.1374 2.0539 1.1618 14 8 2.4390 3.2319 1.1542 15 6 1.9021 1.3615 2.4419 16 6 2.5946 0.1858 2.7542 17 6 2.3340 -0.4283 3.9659 18 6 1.4135 0.1354 4.8318 19 7 0.7749 1.2465 4.5215 20 6 0.9820 1.8723 3.3730 21 7 0.2895 3.0349 3.0888 22 6 -0.7479 3.5125 4.0063 23 6 -0.1027 4.3424 5.1180 24 6 -1.7485 4.3787 3.2386 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.7673 1.6222 -2.0683 31 1 2.2007 3.1039 -1.1824 32 1 4.0738 3.3778 -4.3407 33 1 3.3121 -0.2335 2.0644 34 1 2.8484 -1.3387 4.2362 35 1 1.2143 -0.3436 5.7790 36 1 0.4906 3.5342 2.2819 37 1 -1.2666 2.6595 4.4440 38 1 -0.8745 4.6973 5.8010 39 1 0.6101 3.7253 5.6651 40 1 0.4159 5.1954 4.6804 41 1 -2.2080 3.7874 2.4465 42 1 -2.5201 4.7344 3.9213 43 1 -1.2297 5.2316 2.8008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133370119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:55 Heat of formation + Delta-G solvation = -21.415407 kcal Electronic energy + Delta-G solvation = -24037.581742 eV Core-core repulsion = 20695.789891 eV Total energy + Delta-G solvation = -3341.791851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.76094 -39.94797 -37.94173 -36.95800 -34.99180 -33.43727 -33.36627 -31.66198 -30.05542 -28.86892 -28.10054 -25.90516 -24.92033 -23.99175 -23.62091 -21.74208 -20.48846 -18.78625 -18.64194 -18.09300 -17.65053 -17.36538 -16.43385 -16.04869 -15.76290 -15.59312 -15.46133 -15.06450 -14.78997 -14.58522 -14.25591 -14.16002 -13.84733 -13.61049 -13.33896 -13.24437 -13.13798 -13.10884 -12.96188 -12.70977 -12.56036 -12.43002 -12.21697 -11.98979 -11.91391 -11.71043 -11.15522 -11.01727 -10.69948 -10.60964 -10.27659 -9.48827 -8.66458 -8.23871 -6.39172 0.04655 0.52942 1.35768 1.38211 1.50000 1.78959 2.21421 2.28535 2.42707 2.95423 3.05738 3.51388 3.77709 3.90924 3.99660 4.10916 4.15676 4.21047 4.33001 4.36296 4.42185 4.54573 4.68017 4.71065 4.81973 4.87163 4.89233 4.89815 4.99998 5.00191 5.06399 5.18459 5.20594 5.27887 5.32756 5.35065 5.54947 5.67634 5.81920 6.03564 6.22825 6.34300 6.66035 6.72462 7.17883 7.24377 7.39712 8.83334 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.004754 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.302985 B = 5887.875017 C = 6423.872462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.591 5.591 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.559 3.441 14 O -0.596 6.596 15 C -0.266 4.266 16 C -0.010 4.010 17 C -0.227 4.227 18 C 0.166 3.834 19 N -0.550 5.550 20 C 0.430 3.570 21 N -0.718 5.718 22 C 0.146 3.854 23 C -0.155 4.155 24 C -0.158 4.158 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.023 0.977 31 H 0.000 1.000 32 H 0.267 0.733 33 H 0.138 0.862 34 H 0.172 0.828 35 H 0.198 0.802 36 H 0.403 0.597 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 -8.522 17.065 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 N -0.321 5.321 4 C 0.140 3.860 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.348 3.652 14 O -0.478 6.478 15 C -0.277 4.277 16 C -0.036 4.036 17 C -0.250 4.250 18 C 0.006 3.994 19 N -0.268 5.268 20 C 0.193 3.807 21 N -0.350 5.350 22 C 0.042 3.958 23 C -0.213 4.213 24 C -0.216 4.216 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.041 0.959 31 H 0.018 0.982 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.190 0.810 35 H 0.215 0.785 36 H 0.240 0.760 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.001 -7.388 17.545 21.505 hybrid contribution 1.745 0.330 -1.823 2.545 sum -8.256 -7.059 15.722 19.110 Atomic orbital electron populations 1.22063 0.94950 1.03249 1.00923 1.21853 0.95064 0.81729 1.03878 1.48175 1.62397 1.14884 1.06622 1.18780 0.94790 0.92184 0.80225 1.21719 0.96096 1.33652 1.06686 0.92710 1.25853 1.03030 0.94397 0.95713 1.70061 1.38167 1.35596 1.12905 0.85357 0.78900 0.78007 0.78487 1.18966 1.19338 1.20859 1.18490 0.76388 0.85883 0.84471 1.90697 1.50883 1.18138 1.88101 1.20098 1.08498 1.02399 0.96668 1.21619 0.94512 0.90306 0.97210 1.22054 1.03804 1.04468 0.94624 1.23320 0.88482 0.88230 0.99351 1.67390 1.30323 1.12682 1.16450 1.18248 0.87460 0.86714 0.88315 1.45020 1.39468 1.23535 1.26936 1.21041 0.87491 0.97387 0.89839 1.22131 1.01477 0.99258 0.98443 1.22081 0.99045 0.99387 1.01063 0.93864 0.93807 0.88696 0.90220 0.88759 0.95903 0.98228 0.92383 0.84389 0.81035 0.78502 0.76027 0.89297 0.89478 0.93383 0.93951 0.92614 0.88368 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 10.20 71.98 0.73 -3.65 16 2 C 0.10 3.24 5.90 86.38 0.51 3.75 16 3 N -0.59 -26.31 2.47 -830.04 -2.05 -28.36 16 4 C 0.26 14.39 5.18 85.63 0.44 14.83 16 5 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.53 5.46 84.66 0.46 0.99 16 8 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 9 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.56 25.12 6.48 86.66 0.56 25.68 16 14 O -0.60 -32.15 15.33 -4.03 -0.06 -32.22 16 15 C -0.27 -9.35 4.89 -19.88 -0.10 -9.45 16 16 C -0.01 -0.29 7.74 22.71 0.18 -0.11 16 17 C -0.23 -4.43 10.09 22.32 0.23 -4.21 16 18 C 0.17 3.24 11.16 84.72 0.95 4.19 16 19 N -0.55 -14.68 9.17 -192.51 -1.77 -16.44 16 20 C 0.43 13.90 7.45 133.64 1.00 14.90 16 21 N -0.72 -22.91 5.10 -323.94 -1.65 -24.56 16 22 C 0.15 3.53 3.15 44.99 0.14 3.67 16 23 C -0.15 -3.47 9.50 71.98 0.68 -2.79 16 24 C -0.16 -3.21 9.38 71.98 0.68 -2.53 16 25 H 0.04 1.28 8.03 -2.39 -0.02 1.26 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 2.70 8.03 -2.39 -0.02 2.68 16 29 H 0.09 2.67 4.49 -2.39 -0.01 2.66 16 30 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 31 H 0.00 -0.03 7.35 -2.39 -0.02 -0.04 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.14 3.71 7.34 -2.91 -0.02 3.69 16 34 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.40 14.94 6.56 -92.71 -0.61 14.33 16 37 H 0.09 2.08 7.62 -2.39 -0.02 2.06 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.21 8.08 -2.39 -0.02 1.19 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -74.98 356.96 3.87 -71.11 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.39 Total: 25.53 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.70 Total: 13.99 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.18 Total: -125.45 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.06 Total: -32.22 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -74.98 3.87 -71.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133370119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.697 kcal (2) G-P(sol) polarization free energy of solvation -74.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds