Wall clock time and date at job start Tue Mar 31 2020 07:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00090 * 2 1 4 4 C 1.50701 * 109.47049 * 269.99872 * 3 2 1 5 5 H 1.08005 * 119.99615 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00436 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99557 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47067 * 90.00436 * 8 6 4 10 10 H 1.48504 * 109.46760 * 209.99766 * 8 6 4 11 11 H 1.48491 * 109.47201 * 329.99722 * 8 6 4 12 12 C 1.34772 * 120.00140 * 179.97438 * 2 1 3 13 13 O 1.21632 * 120.00367 * 180.91236 * 12 2 1 14 14 C 1.47162 * 120.00125 * 0.91449 * 12 2 1 15 15 C 1.38405 * 126.88710 * 169.28877 * 14 12 2 16 16 C 1.39673 * 105.36183 * 180.02562 * 15 14 12 17 17 C 1.50695 * 126.07270 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47179 * 34.99157 * 17 16 15 19 19 C 1.53005 * 109.47454 * 180.02562 * 18 17 16 20 20 C 1.53007 * 109.46892 * 59.99867 * 19 18 17 21 21 C 1.52997 * 109.47180 * 300.00302 * 20 19 18 22 22 C 1.53005 * 109.46726 * 274.99598 * 17 16 15 23 23 N 1.30868 * 107.85782 * 359.97438 * 16 15 14 24 24 N 1.28440 * 110.93191 * 0.02562 * 23 16 15 25 25 H 0.96996 * 125.19410 * 180.02562 * 24 23 16 26 26 H 1.08997 * 109.47490 * 263.39506 * 1 2 3 27 27 H 1.09000 * 109.47160 * 23.40015 * 1 2 3 28 28 H 1.09001 * 109.47226 * 143.40096 * 1 2 3 29 29 H 1.09000 * 109.47088 * 29.99261 * 3 2 1 30 30 H 1.08997 * 109.47662 * 149.99863 * 3 2 1 31 31 H 0.97006 * 120.00294 * 179.97438 * 7 6 4 32 32 H 1.07996 * 127.32002 * 359.76738 * 15 14 12 33 33 H 1.09000 * 109.47804 * 154.99709 * 17 16 15 34 34 H 1.09000 * 109.47488 * 300.00452 * 18 17 16 35 35 H 1.09000 * 109.47083 * 60.00194 * 18 17 16 36 36 H 1.09000 * 109.46945 * 300.00544 * 19 18 17 37 37 H 1.08997 * 109.47183 * 179.97438 * 19 18 17 38 38 H 1.08993 * 109.46905 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46533 * 60.00076 * 20 19 18 40 40 H 1.08992 * 109.47250 * 300.00026 * 21 20 19 41 41 H 1.08998 * 109.46734 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47004 * 299.99422 * 22 17 16 43 43 H 1.08992 * 109.47406 * 59.99925 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1260 2.8779 -1.6729 7 7 3.5524 3.6185 -0.6733 8 14 3.4367 3.4174 -3.4341 9 1 2.3064 4.2600 -3.9004 10 1 4.6967 4.2007 -3.4968 11 1 3.5541 2.2204 -4.3050 12 6 2.1388 -1.1671 0.0005 13 8 3.3550 -1.1673 0.0173 14 6 1.4032 -2.4416 -0.0192 15 6 1.9327 -3.7033 -0.2272 16 6 0.8458 -4.5774 -0.1541 17 6 0.8989 -6.0747 -0.3156 18 6 2.2067 -6.6053 0.2750 19 6 2.2610 -8.1255 0.1106 20 6 2.1917 -8.4805 -1.3761 21 6 0.8838 -7.9499 -1.9667 22 6 0.8294 -6.4301 -1.8021 23 7 -0.2270 -3.8651 0.0794 24 7 0.0608 -2.6162 0.1638 25 1 -0.5775 -1.9056 0.3324 26 1 -0.3634 -0.1182 1.0208 27 1 -0.3633 0.9431 -0.4081 28 1 -0.3634 -0.8250 -0.6127 29 1 1.6083 2.0284 0.5137 30 1 3.1499 1.1385 0.5138 31 1 4.0293 4.4445 -0.8505 32 1 2.9661 -3.9575 -0.4114 33 1 0.0550 -6.5266 0.2058 34 1 3.0506 -6.1535 -0.2464 35 1 2.2563 -6.3521 1.3340 36 1 1.4171 -8.5777 0.6317 37 1 3.1929 -8.5034 0.5309 38 1 2.2299 -9.5634 -1.4932 39 1 3.0355 -8.0282 -1.8972 40 1 0.0401 -8.4020 -1.4456 41 1 0.8348 -8.2024 -3.0259 42 1 -0.1023 -6.0522 -2.2229 43 1 1.6732 -5.9783 -2.3236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159549088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:12 Heat of formation + Delta-G solvation = 28.918632 kcal Electronic energy + Delta-G solvation = -23189.846617 eV Core-core repulsion = 19850.237413 eV Total energy + Delta-G solvation = -3339.609204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.47920 -38.89881 -38.40632 -35.22362 -33.15899 -32.54693 -30.94771 -30.56751 -29.69207 -27.78441 -26.36787 -23.88329 -23.39418 -22.69807 -21.59960 -20.50628 -19.89350 -19.39110 -17.19341 -16.65269 -16.01252 -15.55062 -15.48564 -15.38175 -14.48180 -14.33043 -14.30992 -14.12914 -13.92652 -13.39200 -12.94237 -12.73309 -12.61869 -12.41733 -12.30259 -12.24207 -11.94152 -11.39470 -11.30809 -11.23331 -10.98904 -10.78610 -10.67636 -10.47808 -10.40126 -10.27292 -10.21369 -9.76221 -9.32612 -8.96202 -8.86618 -8.51441 -7.87983 -6.12530 -4.18096 1.61069 2.68844 2.99880 3.25925 3.33084 3.37168 3.61350 3.82201 4.36103 4.38992 4.60242 4.66710 4.79358 4.88666 5.10352 5.13992 5.15767 5.22420 5.33735 5.38021 5.39185 5.44624 5.46019 5.52575 5.64641 5.71025 5.86926 5.88899 5.91253 6.03296 6.04057 6.09605 6.12459 6.23569 6.37984 6.64393 6.84879 7.11013 7.26757 7.35749 7.82793 8.08757 8.11426 8.18932 8.72221 8.88848 9.47434 10.95643 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.003285 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.452368 B = 8520.641191 C = 8879.160401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.595 5.595 3 C 0.245 3.755 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.576 3.424 13 O -0.518 6.518 14 C -0.017 4.017 15 C -0.161 4.161 16 C 0.031 3.969 17 C 0.003 3.997 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.110 4.110 23 N -0.286 5.286 24 N -0.388 5.388 25 H 0.446 0.554 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 -20.051 1.251 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.328 5.328 3 C 0.127 3.873 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.360 3.640 13 O -0.392 6.392 14 C -0.146 4.146 15 C -0.190 4.190 16 C -0.128 4.128 17 C -0.017 4.017 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.148 4.148 23 N -0.119 5.119 24 N -0.112 5.112 25 H 0.300 0.700 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.177 0.823 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.520 -19.867 1.484 21.668 hybrid contribution 0.554 1.021 -1.019 1.546 sum -7.966 -18.846 0.464 20.466 Atomic orbital electron populations 1.22018 0.82431 1.03886 0.99975 1.48120 1.05694 1.07973 1.70973 1.19415 0.92700 0.77278 0.97908 1.21409 1.37085 1.06479 0.92080 0.92341 1.24933 0.95145 0.96281 0.97622 1.69925 1.38121 1.14297 1.30831 0.86463 0.77754 0.78642 0.84408 1.20593 1.20962 1.19806 1.17009 0.86908 0.81592 0.78459 1.90815 1.12321 1.86169 1.49932 1.22199 0.84753 0.97199 1.10459 1.21937 1.00579 0.89616 1.06903 1.21892 0.89125 0.96482 1.05284 1.19399 0.98978 0.86578 0.96715 1.21582 0.97067 0.95222 1.01187 1.21530 1.01769 0.95841 0.96397 1.21564 0.98054 1.00234 0.96052 1.21524 0.97813 0.95567 1.00627 1.21562 1.02494 0.95636 0.95155 1.72985 1.27563 0.90835 1.20525 1.44889 1.07326 1.06582 1.52370 0.70038 0.93013 0.88788 0.92460 0.94530 0.93333 0.92563 0.82284 0.90020 0.91203 0.91608 0.92036 0.91886 0.92269 0.91813 0.92015 0.92011 0.91832 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 8.91 59.84 0.53 1.45 16 2 N -0.60 -12.39 2.86 -184.34 -0.53 -12.92 16 3 C 0.25 6.25 5.14 -5.19 -0.03 6.23 16 4 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 C 0.58 12.35 7.66 -12.64 -0.10 12.25 16 13 O -0.52 -13.17 16.51 5.25 0.09 -13.08 16 14 C -0.02 -0.30 6.73 -82.06 -0.55 -0.85 16 15 C -0.16 -2.58 10.01 -38.98 -0.39 -2.97 16 16 C 0.03 0.43 6.13 -82.47 -0.51 -0.08 16 17 C 0.00 0.04 2.65 -91.77 -0.24 -0.21 16 18 C -0.11 -1.08 4.80 -26.73 -0.13 -1.21 16 19 C -0.12 -0.92 5.92 -26.72 -0.16 -1.08 16 20 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 21 C -0.12 -0.94 5.92 -26.75 -0.16 -1.10 16 22 C -0.11 -1.09 5.18 -26.75 -0.14 -1.23 16 23 N -0.29 -4.21 12.14 33.64 0.41 -3.80 16 24 N -0.39 -5.66 5.95 33.48 0.20 -5.46 16 25 H 0.45 5.34 4.98 -190.46 -0.95 4.39 16 26 H 0.05 0.61 7.76 -51.93 -0.40 0.21 16 27 H 0.09 1.38 8.02 -51.93 -0.42 0.97 16 28 H 0.06 0.75 5.20 -51.93 -0.27 0.48 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.39 7.41 -51.93 -0.38 1.01 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.16 2.43 7.52 -52.49 -0.39 2.03 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.70 7.37 -51.93 -0.38 0.32 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -32.59 345.29 -8.75 -41.34 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.39 Total: 0.84 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.44 Total: -3.35 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.82 Total: -47.50 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.59 -8.75 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159549088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.259 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds