Wall clock time and date at job start Tue Mar 31 2020 07:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00090 * 2 1 4 4 C 1.50701 * 109.47049 * 269.99872 * 3 2 1 5 5 H 1.08005 * 119.99615 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00436 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99557 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47067 * 90.00436 * 8 6 4 10 10 H 1.48504 * 109.46760 * 209.99766 * 8 6 4 11 11 H 1.48491 * 109.47201 * 329.99722 * 8 6 4 12 12 C 1.34772 * 120.00140 * 179.97438 * 2 1 3 13 13 O 1.21632 * 120.00367 * 180.91236 * 12 2 1 14 14 C 1.47162 * 120.00125 * 0.91449 * 12 2 1 15 15 C 1.38405 * 126.88710 * 169.28877 * 14 12 2 16 16 C 1.39673 * 105.36183 * 180.02562 * 15 14 12 17 17 C 1.50695 * 126.07270 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47179 * 34.99157 * 17 16 15 19 19 C 1.53005 * 109.47454 * 180.02562 * 18 17 16 20 20 C 1.53007 * 109.46892 * 59.99867 * 19 18 17 21 21 C 1.52997 * 109.47180 * 300.00302 * 20 19 18 22 22 C 1.53005 * 109.46726 * 274.99598 * 17 16 15 23 23 N 1.30868 * 107.85782 * 359.97438 * 16 15 14 24 24 N 1.28440 * 110.93191 * 0.02562 * 23 16 15 25 25 H 0.96996 * 125.19410 * 180.02562 * 24 23 16 26 26 H 1.08997 * 109.47490 * 263.39506 * 1 2 3 27 27 H 1.09000 * 109.47160 * 23.40015 * 1 2 3 28 28 H 1.09001 * 109.47226 * 143.40096 * 1 2 3 29 29 H 1.09000 * 109.47088 * 29.99261 * 3 2 1 30 30 H 1.08997 * 109.47662 * 149.99863 * 3 2 1 31 31 H 0.97006 * 120.00294 * 179.97438 * 7 6 4 32 32 H 1.07996 * 127.32002 * 359.76738 * 15 14 12 33 33 H 1.09000 * 109.47804 * 154.99709 * 17 16 15 34 34 H 1.09000 * 109.47488 * 300.00452 * 18 17 16 35 35 H 1.09000 * 109.47083 * 60.00194 * 18 17 16 36 36 H 1.09000 * 109.46945 * 300.00544 * 19 18 17 37 37 H 1.08997 * 109.47183 * 179.97438 * 19 18 17 38 38 H 1.08993 * 109.46905 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46533 * 60.00076 * 20 19 18 40 40 H 1.08992 * 109.47250 * 300.00026 * 21 20 19 41 41 H 1.08998 * 109.46734 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47004 * 299.99422 * 22 17 16 43 43 H 1.08992 * 109.47406 * 59.99925 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1260 2.8779 -1.6729 7 7 3.5524 3.6185 -0.6733 8 14 3.4367 3.4174 -3.4341 9 1 2.3064 4.2600 -3.9004 10 1 4.6967 4.2007 -3.4968 11 1 3.5541 2.2204 -4.3050 12 6 2.1388 -1.1671 0.0005 13 8 3.3550 -1.1673 0.0173 14 6 1.4032 -2.4416 -0.0192 15 6 1.9327 -3.7033 -0.2272 16 6 0.8458 -4.5774 -0.1541 17 6 0.8989 -6.0747 -0.3156 18 6 2.2067 -6.6053 0.2750 19 6 2.2610 -8.1255 0.1106 20 6 2.1917 -8.4805 -1.3761 21 6 0.8838 -7.9499 -1.9667 22 6 0.8294 -6.4301 -1.8021 23 7 -0.2270 -3.8651 0.0794 24 7 0.0608 -2.6162 0.1638 25 1 -0.5775 -1.9056 0.3324 26 1 -0.3634 -0.1182 1.0208 27 1 -0.3633 0.9431 -0.4081 28 1 -0.3634 -0.8250 -0.6127 29 1 1.6083 2.0284 0.5137 30 1 3.1499 1.1385 0.5138 31 1 4.0293 4.4445 -0.8505 32 1 2.9661 -3.9575 -0.4114 33 1 0.0550 -6.5266 0.2058 34 1 3.0506 -6.1535 -0.2464 35 1 2.2563 -6.3521 1.3340 36 1 1.4171 -8.5777 0.6317 37 1 3.1929 -8.5034 0.5309 38 1 2.2299 -9.5634 -1.4932 39 1 3.0355 -8.0282 -1.8972 40 1 0.0401 -8.4020 -1.4456 41 1 0.8348 -8.2024 -3.0259 42 1 -0.1023 -6.0522 -2.2229 43 1 1.6732 -5.9783 -2.3236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159549088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:12 Heat of formation + Delta-G solvation = 9.049421 kcal Electronic energy + Delta-G solvation = -23190.708210 eV Core-core repulsion = 19850.237413 eV Total energy + Delta-G solvation = -3340.470797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.72927 -40.48846 -39.26562 -36.94352 -34.93968 -33.86657 -32.08994 -31.53341 -30.79862 -29.50600 -27.87464 -25.71453 -24.30932 -23.56895 -23.01761 -21.64900 -21.11175 -20.28295 -18.78512 -18.64407 -17.33701 -17.21182 -16.91771 -16.30628 -16.25414 -15.73594 -15.18130 -15.00744 -14.91921 -14.65943 -14.37427 -14.28853 -14.06443 -13.55658 -13.36192 -13.32884 -13.11795 -12.99472 -12.87262 -12.57742 -12.34808 -12.23738 -11.92854 -11.79431 -11.72735 -11.27484 -11.12293 -11.06049 -10.99643 -10.67340 -10.23947 -10.08356 -9.62162 -8.26939 -6.41720 0.20153 1.35821 1.38802 1.48475 1.49918 1.74457 2.03264 2.26221 2.37872 3.03547 3.28514 3.47075 3.83309 3.91283 3.96516 4.06171 4.24842 4.32577 4.36291 4.44786 4.49350 4.64751 4.65652 4.67007 4.71976 4.73317 4.83112 4.93107 5.08291 5.15505 5.23921 5.32721 5.33553 5.35078 5.37483 5.40935 5.51230 5.51793 5.66186 5.70372 5.94583 5.98322 6.44787 6.65779 6.92123 7.09170 7.30212 8.80565 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.003285 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.452368 B = 8520.641191 C = 8879.160401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.600 5.600 3 C 0.259 3.741 4 C -0.549 4.549 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.571 3.429 13 O -0.573 6.573 14 C -0.036 4.036 15 C -0.162 4.162 16 C 0.036 3.964 17 C 0.005 3.995 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.108 4.108 23 N -0.280 5.280 24 N -0.373 5.373 25 H 0.456 0.544 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.005 0.995 31 H 0.269 0.731 32 H 0.160 0.840 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 -21.762 0.413 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.331 5.331 3 C 0.139 3.861 4 C -0.587 4.587 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.359 3.641 13 O -0.451 6.451 14 C -0.165 4.165 15 C -0.191 4.191 16 C -0.122 4.122 17 C -0.015 4.015 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.147 4.147 23 N -0.113 5.113 24 N -0.098 5.098 25 H 0.313 0.687 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.078 0.922 32 H 0.177 0.823 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.318 -21.580 0.654 23.929 hybrid contribution 1.052 1.505 -0.711 1.969 sum -9.267 -20.075 -0.057 22.111 Atomic orbital electron populations 1.22349 0.78623 1.05006 1.02871 1.48069 1.08109 1.06381 1.70504 1.18922 0.91469 0.79284 0.96457 1.21664 1.37466 1.06726 0.92841 0.92944 1.25817 0.94696 0.96308 1.01970 1.70032 1.38637 1.14758 1.33000 0.85415 0.78192 0.78183 0.79038 1.18725 1.20494 1.19966 1.17469 0.86563 0.82777 0.77336 1.90771 1.14742 1.87129 1.52497 1.21610 0.86022 0.95628 1.13221 1.22129 1.01289 0.89608 1.06106 1.22352 0.87963 0.97850 1.04032 1.19545 0.99965 0.84338 0.97616 1.21580 0.96087 0.96719 1.00632 1.21513 1.02600 0.94185 0.96839 1.21573 0.97576 1.01097 0.95635 1.21504 0.98406 0.93831 1.01353 1.21541 1.01709 0.97246 0.94164 1.73017 1.27562 0.90685 1.20046 1.44846 1.06281 1.06977 1.51746 0.68732 0.89296 0.88536 0.90354 0.94569 0.97642 0.92216 0.82282 0.88999 0.92082 0.92063 0.91099 0.91166 0.90801 0.92431 0.91062 0.91278 0.92369 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.53 8.91 127.77 1.14 2.66 16 2 N -0.60 -25.36 2.86 -855.38 -2.44 -27.80 16 3 C 0.26 13.70 5.14 85.63 0.44 14.14 16 4 C -0.55 -31.21 9.39 25.60 0.24 -30.97 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.67 5.46 84.66 0.46 1.13 16 7 N -0.92 -54.94 13.29 21.45 0.28 -54.66 16 8 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 C 0.57 25.20 7.66 86.59 0.66 25.86 16 13 O -0.57 -30.67 16.51 -4.13 -0.07 -30.74 16 14 C -0.04 -1.26 6.73 40.79 0.27 -0.98 16 15 C -0.16 -5.14 10.01 22.66 0.23 -4.91 16 16 C 0.04 0.96 6.13 43.05 0.26 1.22 16 17 C 0.01 0.11 2.65 -11.54 -0.03 0.08 16 18 C -0.11 -2.00 4.80 30.60 0.15 -1.86 16 19 C -0.11 -1.52 5.92 30.60 0.18 -1.34 16 20 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 21 C -0.11 -1.52 5.92 30.58 0.18 -1.34 16 22 C -0.11 -1.96 5.18 30.58 0.16 -1.81 16 23 N -0.28 -7.65 12.14 -47.50 -0.58 -8.23 16 24 N -0.37 -10.23 5.95 -47.99 -0.29 -10.52 16 25 H 0.46 9.84 4.98 -220.01 -1.10 8.74 16 26 H 0.09 1.88 7.76 -2.39 -0.02 1.86 16 27 H 0.10 2.71 8.02 -2.39 -0.02 2.69 16 28 H 0.08 1.88 5.20 -2.39 -0.01 1.87 16 29 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 30 H 0.01 0.33 7.41 -2.39 -0.02 0.31 16 31 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 32 H 0.16 4.97 7.52 -2.91 -0.02 4.95 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.19 7.37 -2.39 -0.02 1.18 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.21 345.29 3.37 -68.84 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.09 Total: 16.16 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 4.53 Total: 0.52 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.02 Total: -101.20 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.07 Total: -30.74 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.21 3.37 -68.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159549088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.888 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds