Wall clock time and date at job start Tue Mar 31 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47108 * 2 1 4 4 C 1.36840 * 120.00062 * 260.95409 * 3 2 1 5 5 H 1.07997 * 119.99768 * 196.46331 * 4 3 2 6 6 C 1.39047 * 120.00072 * 16.46929 * 4 3 2 7 7 N 1.31369 * 120.00097 * 18.70821 * 6 4 3 8 8 Si 1.86803 * 119.99921 * 198.71678 * 6 4 3 9 9 H 1.48497 * 109.47269 * 89.99910 * 8 6 4 10 10 H 1.48506 * 109.46920 * 209.99879 * 8 6 4 11 11 H 1.48502 * 109.46750 * 329.99317 * 8 6 4 12 12 C 1.34780 * 119.99979 * 80.95094 * 3 2 1 13 13 O 1.21669 * 120.00037 * 183.26407 * 12 3 2 14 14 C 1.47027 * 119.99895 * 3.26943 * 12 3 2 15 15 C 1.38517 * 126.89600 * 170.68723 * 14 12 3 16 16 C 1.39647 * 105.34850 * 180.02562 * 15 14 12 17 17 C 1.50697 * 126.05704 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47137 * 35.00004 * 17 16 15 19 19 C 1.53001 * 109.47308 * 179.97438 * 18 17 16 20 20 C 1.53007 * 109.46819 * 59.99830 * 19 18 17 21 21 C 1.53005 * 109.47155 * 299.99867 * 20 19 18 22 22 C 1.52993 * 109.47195 * 274.99845 * 17 16 15 23 23 N 1.30873 * 107.87898 * 359.97438 * 16 15 14 24 24 N 1.28446 * 110.95384 * 359.97438 * 23 16 15 25 25 H 0.96997 * 125.19548 * 180.02562 * 24 23 16 26 26 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46779 * 299.99667 * 1 2 3 28 28 H 1.09001 * 109.47167 * 59.99761 * 1 2 3 29 29 H 1.09001 * 109.46983 * 240.00101 * 2 1 3 30 30 H 1.09001 * 109.47167 * 120.00239 * 2 1 3 31 31 H 0.97002 * 119.99711 * 179.97438 * 7 6 4 32 32 H 1.07998 * 127.32545 * 359.75832 * 15 14 12 33 33 H 1.09004 * 109.46878 * 154.99699 * 17 16 15 34 34 H 1.08993 * 109.47402 * 299.99709 * 18 17 16 35 35 H 1.09001 * 109.47237 * 59.99615 * 18 17 16 36 36 H 1.09002 * 109.46900 * 300.00440 * 19 18 17 37 37 H 1.08994 * 109.47415 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.46718 * 180.02562 * 20 19 18 39 39 H 1.08993 * 109.46933 * 60.00511 * 20 19 18 40 40 H 1.08994 * 109.47214 * 300.00238 * 21 20 19 41 41 H 1.08996 * 109.46951 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47593 * 299.99988 * 22 17 16 43 43 H 1.08994 * 109.47374 * 60.00038 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4221 1.9642 -1.1703 5 1 3.0207 2.8628 -1.1475 6 6 2.0616 1.3996 -2.3888 7 7 1.0593 0.5526 -2.4494 8 14 3.0028 1.8455 -3.9396 9 1 4.1352 0.9019 -4.1199 10 1 2.0949 1.7589 -5.1117 11 1 3.5262 3.2300 -3.8201 12 6 2.0699 2.0777 1.1527 13 8 2.4190 3.2432 1.1441 14 6 1.7044 1.4291 2.4205 15 6 1.8732 1.9422 3.6961 16 6 1.3770 0.9615 4.5576 17 6 1.3351 1.0411 6.0618 18 6 1.0655 2.4854 6.4888 19 6 1.0223 2.5662 8.0160 20 6 2.3646 2.1070 8.5892 21 6 2.6341 0.6626 8.1623 22 6 2.6775 0.5822 6.6345 23 7 0.9549 -0.0389 3.8270 24 7 1.1293 0.1995 2.5769 25 1 0.8899 -0.4017 1.8544 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.8076 0.1591 -3.2996 32 1 2.3018 2.8957 3.9669 33 1 0.5403 0.3968 6.4378 34 1 1.8602 3.1298 6.1129 35 1 0.1091 2.8124 6.0808 36 1 0.2274 1.9218 8.3916 37 1 0.8307 3.5952 8.3202 38 1 2.3336 2.1641 9.6773 39 1 3.1595 2.7513 8.2137 40 1 1.8392 0.0184 8.5378 41 1 3.5905 0.3357 8.5702 42 1 2.8696 -0.4468 6.3304 43 1 3.4722 1.2264 6.2586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159741625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:03 Heat of formation + Delta-G solvation = 44.899308 kcal Electronic energy + Delta-G solvation = -23812.020533 eV Core-core repulsion = 20473.104304 eV Total energy + Delta-G solvation = -3338.916229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.09119 -38.67342 -38.14398 -35.46363 -32.98042 -31.89907 -30.76118 -30.17595 -30.02715 -28.74773 -25.42034 -23.23698 -22.95604 -22.54605 -21.81570 -20.26122 -19.77553 -19.21760 -17.50275 -16.74033 -15.85229 -15.28878 -15.08640 -14.83601 -14.25356 -14.15225 -14.14183 -13.74785 -13.62802 -13.21215 -12.85190 -12.45990 -12.34198 -12.23475 -12.15232 -12.05558 -11.57094 -11.31048 -11.18657 -11.09032 -11.05613 -10.57106 -10.48665 -10.43566 -10.29871 -10.23443 -10.17407 -10.01934 -9.19894 -8.74250 -8.56212 -8.41187 -7.95426 -6.54541 -4.02627 2.05651 3.03052 3.11267 3.15841 3.20674 3.49292 3.96109 4.16572 4.55239 4.65221 4.77359 4.81401 4.93028 5.07420 5.25767 5.30590 5.41628 5.51103 5.53058 5.55911 5.62704 5.67042 5.75330 5.86197 6.00798 6.04154 6.07612 6.13207 6.17632 6.19272 6.20238 6.28341 6.35576 6.41077 6.47081 6.58036 6.90189 7.05422 7.23881 7.50989 7.53997 7.90521 8.28126 8.58848 8.95633 9.15453 9.73268 10.45096 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.003567 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.250045 B = 7847.224836 C = 8199.145255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.104 3.896 3 N -0.427 5.427 4 C -0.301 4.301 5 H 0.108 0.892 6 C 0.030 3.970 7 N -0.868 5.868 8 Si 0.931 3.069 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.501 3.499 13 O -0.573 6.573 14 C 0.008 3.992 15 C -0.184 4.184 16 C 0.026 3.974 17 C 0.005 3.995 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.109 4.109 23 N -0.302 5.302 24 N -0.392 5.392 25 H 0.450 0.550 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.034 0.966 31 H 0.271 0.729 32 H 0.153 0.847 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -3.094 14.327 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 N -0.145 5.145 4 C -0.429 4.429 5 H 0.126 0.874 6 C -0.174 4.174 7 N -0.508 5.508 8 Si 0.757 3.243 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.192 1.192 12 C 0.289 3.711 13 O -0.456 6.456 14 C -0.121 4.121 15 C -0.214 4.214 16 C -0.132 4.132 17 C -0.015 4.015 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.147 4.147 23 N -0.134 5.134 24 N -0.119 5.119 25 H 0.307 0.693 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.170 0.830 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.661 -3.697 14.152 14.642 hybrid contribution 0.477 0.423 -1.338 1.482 sum -0.184 -3.274 12.814 13.227 Atomic orbital electron populations 1.22481 0.95986 1.00980 1.03757 1.21740 0.94821 0.84585 1.00911 1.43687 1.53967 1.10417 1.06432 1.19820 1.29775 1.11626 0.81692 0.87404 1.25362 0.95572 0.96936 0.99500 1.69960 1.23492 1.30319 1.27001 0.85835 0.79134 0.79427 0.79877 1.20196 1.20835 1.19162 1.16798 0.86204 0.86211 0.81872 1.90658 1.53630 1.15610 1.85681 1.22302 1.04364 0.88134 0.97332 1.21769 1.08170 1.01683 0.89744 1.21773 1.03420 0.92057 0.95970 1.19338 0.98148 0.97283 0.86700 1.21567 1.02451 0.95849 0.95094 1.21534 0.97408 1.00989 0.95603 1.21558 0.97788 0.96693 0.99771 1.21545 1.01367 0.96751 0.95858 1.21567 0.96955 1.01567 0.94661 1.72921 1.22876 1.26661 0.90951 1.45396 1.45157 1.15085 1.06215 0.69272 0.93287 0.95122 0.87002 0.86881 0.94890 0.91822 0.82951 0.90310 0.91272 0.91683 0.92101 0.92022 0.92401 0.91884 0.92068 0.92156 0.91917 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 8.41 37.16 0.31 -3.12 16 2 C 0.10 2.20 4.81 -4.04 -0.02 2.18 16 3 N -0.43 -10.65 2.64 -116.18 -0.31 -10.96 16 4 C -0.30 -8.00 9.35 -15.02 -0.14 -8.14 16 5 H 0.11 3.01 7.37 -52.49 -0.39 2.63 16 6 C 0.03 0.73 4.95 -17.45 -0.09 0.65 16 7 N -0.87 -20.86 8.50 55.50 0.47 -20.38 16 8 Si 0.93 19.48 29.59 -169.99 -5.03 14.45 16 9 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 12 C 0.50 12.67 7.52 -12.70 -0.10 12.57 16 13 O -0.57 -16.19 16.58 5.22 0.09 -16.10 16 14 C 0.01 0.17 6.50 -82.06 -0.53 -0.36 16 15 C -0.18 -3.55 10.01 -38.95 -0.39 -3.94 16 16 C 0.03 0.45 6.13 -82.48 -0.51 -0.06 16 17 C 0.01 0.07 2.65 -91.78 -0.24 -0.17 16 18 C -0.11 -1.30 4.80 -26.73 -0.13 -1.43 16 19 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 20 C -0.12 -1.06 5.92 -26.72 -0.16 -1.22 16 21 C -0.12 -1.10 5.93 -26.70 -0.16 -1.25 16 22 C -0.11 -1.28 5.19 -26.71 -0.14 -1.42 16 23 N -0.30 -5.55 12.14 33.63 0.41 -5.14 16 24 N -0.39 -7.53 5.12 33.48 0.17 -7.36 16 25 H 0.45 8.07 3.58 -190.46 -0.68 7.38 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.60 6.44 -51.93 -0.33 0.26 16 28 H 0.11 2.54 6.15 -51.93 -0.32 2.22 16 29 H 0.11 2.52 6.04 -51.93 -0.31 2.21 16 30 H 0.03 0.64 5.10 -51.93 -0.26 0.37 16 31 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 32 H 0.15 2.79 7.52 -52.49 -0.39 2.39 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.83 7.37 -51.93 -0.38 0.45 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -28.55 331.42 -8.51 -37.06 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -6.86 Total: 10.40 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.44 Total: -6.96 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.74 Total: -43.84 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.55 -8.51 -37.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159741625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.960 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds