Wall clock time and date at job start Tue Mar 31 2020 06:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47108 * 2 1 4 4 C 1.36840 * 120.00062 * 260.95409 * 3 2 1 5 5 H 1.07997 * 119.99768 * 196.46331 * 4 3 2 6 6 C 1.39047 * 120.00072 * 16.46929 * 4 3 2 7 7 N 1.31369 * 120.00097 * 18.70821 * 6 4 3 8 8 Si 1.86803 * 119.99921 * 198.71678 * 6 4 3 9 9 H 1.48497 * 109.47269 * 89.99910 * 8 6 4 10 10 H 1.48506 * 109.46920 * 209.99879 * 8 6 4 11 11 H 1.48502 * 109.46750 * 329.99317 * 8 6 4 12 12 C 1.34780 * 119.99979 * 80.95094 * 3 2 1 13 13 O 1.21669 * 120.00037 * 183.26407 * 12 3 2 14 14 C 1.47027 * 119.99895 * 3.26943 * 12 3 2 15 15 C 1.38517 * 126.89600 * 170.68723 * 14 12 3 16 16 C 1.39647 * 105.34850 * 180.02562 * 15 14 12 17 17 C 1.50697 * 126.05704 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47137 * 35.00004 * 17 16 15 19 19 C 1.53001 * 109.47308 * 179.97438 * 18 17 16 20 20 C 1.53007 * 109.46819 * 59.99830 * 19 18 17 21 21 C 1.53005 * 109.47155 * 299.99867 * 20 19 18 22 22 C 1.52993 * 109.47195 * 274.99845 * 17 16 15 23 23 N 1.30873 * 107.87898 * 359.97438 * 16 15 14 24 24 N 1.28446 * 110.95384 * 359.97438 * 23 16 15 25 25 H 0.96997 * 125.19548 * 180.02562 * 24 23 16 26 26 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46779 * 299.99667 * 1 2 3 28 28 H 1.09001 * 109.47167 * 59.99761 * 1 2 3 29 29 H 1.09001 * 109.46983 * 240.00101 * 2 1 3 30 30 H 1.09001 * 109.47167 * 120.00239 * 2 1 3 31 31 H 0.97002 * 119.99711 * 179.97438 * 7 6 4 32 32 H 1.07998 * 127.32545 * 359.75832 * 15 14 12 33 33 H 1.09004 * 109.46878 * 154.99699 * 17 16 15 34 34 H 1.08993 * 109.47402 * 299.99709 * 18 17 16 35 35 H 1.09001 * 109.47237 * 59.99615 * 18 17 16 36 36 H 1.09002 * 109.46900 * 300.00440 * 19 18 17 37 37 H 1.08994 * 109.47415 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.46718 * 180.02562 * 20 19 18 39 39 H 1.08993 * 109.46933 * 60.00511 * 20 19 18 40 40 H 1.08994 * 109.47214 * 300.00238 * 21 20 19 41 41 H 1.08996 * 109.46951 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47593 * 299.99988 * 22 17 16 43 43 H 1.08994 * 109.47374 * 60.00038 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4221 1.9642 -1.1703 5 1 3.0207 2.8628 -1.1475 6 6 2.0616 1.3996 -2.3888 7 7 1.0593 0.5526 -2.4494 8 14 3.0028 1.8455 -3.9396 9 1 4.1352 0.9019 -4.1199 10 1 2.0949 1.7589 -5.1117 11 1 3.5262 3.2300 -3.8201 12 6 2.0699 2.0777 1.1527 13 8 2.4190 3.2432 1.1441 14 6 1.7044 1.4291 2.4205 15 6 1.8732 1.9422 3.6961 16 6 1.3770 0.9615 4.5576 17 6 1.3351 1.0411 6.0618 18 6 1.0655 2.4854 6.4888 19 6 1.0223 2.5662 8.0160 20 6 2.3646 2.1070 8.5892 21 6 2.6341 0.6626 8.1623 22 6 2.6775 0.5822 6.6345 23 7 0.9549 -0.0389 3.8270 24 7 1.1293 0.1995 2.5769 25 1 0.8899 -0.4017 1.8544 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.8076 0.1591 -3.2996 32 1 2.3018 2.8957 3.9669 33 1 0.5403 0.3968 6.4378 34 1 1.8602 3.1298 6.1129 35 1 0.1091 2.8124 6.0808 36 1 0.2274 1.9218 8.3916 37 1 0.8307 3.5952 8.3202 38 1 2.3336 2.1641 9.6773 39 1 3.1595 2.7513 8.2137 40 1 1.8392 0.0184 8.5378 41 1 3.5905 0.3357 8.5702 42 1 2.8696 -0.4468 6.3304 43 1 3.4722 1.2264 6.2586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159741625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:02 Heat of formation + Delta-G solvation = 29.695397 kcal Electronic energy + Delta-G solvation = -23812.679824 eV Core-core repulsion = 20473.104304 eV Total energy + Delta-G solvation = -3339.575520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.63437 -40.37557 -39.22371 -37.38167 -34.52274 -33.46864 -31.87550 -31.75606 -31.45441 -30.06322 -27.32157 -24.67306 -24.29936 -23.73897 -23.20779 -21.62442 -21.18470 -20.30054 -19.33267 -18.52736 -17.48905 -16.69849 -16.66007 -16.20218 -16.00601 -15.49206 -15.23941 -14.95300 -14.91765 -14.70342 -14.46070 -14.03802 -13.85370 -13.42178 -13.32330 -13.17980 -12.98598 -12.96869 -12.83145 -12.35546 -12.21578 -12.15998 -11.98215 -11.91847 -11.65555 -11.25683 -11.09514 -11.06992 -10.97247 -10.70742 -10.09210 -9.99381 -9.82464 -8.44672 -6.02825 0.36436 1.39921 1.42710 1.53441 1.61128 1.93862 2.22038 2.30685 2.80007 3.00199 3.43450 3.65430 3.87096 3.95160 3.98274 4.11969 4.31896 4.41456 4.45908 4.46618 4.52390 4.53893 4.66718 4.69805 4.74774 4.77310 4.84304 4.89837 5.10869 5.15007 5.24667 5.32455 5.34454 5.35499 5.36591 5.41992 5.53066 5.59883 5.67629 5.72639 5.89144 6.07252 6.37118 6.98920 7.07036 7.23068 7.80002 8.52922 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.003567 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.250045 B = 7847.224836 C = 8199.145255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 N -0.432 5.432 4 C -0.348 4.348 5 H 0.079 0.921 6 C 0.008 3.992 7 N -0.867 5.867 8 Si 0.994 3.006 9 H -0.265 1.265 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.486 3.514 13 O -0.620 6.620 14 C -0.018 4.018 15 C -0.182 4.182 16 C 0.037 3.963 17 C 0.007 3.993 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.107 4.107 23 N -0.299 5.299 24 N -0.386 5.386 25 H 0.453 0.547 26 H 0.085 0.915 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.280 0.720 32 H 0.156 0.844 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -4.527 15.620 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.149 5.149 4 C -0.476 4.476 5 H 0.097 0.903 6 C -0.196 4.196 7 N -0.504 5.504 8 Si 0.817 3.183 9 H -0.190 1.190 10 H -0.195 1.195 11 H -0.203 1.203 12 C 0.276 3.724 13 O -0.507 6.507 14 C -0.147 4.147 15 C -0.211 4.211 16 C -0.122 4.122 17 C -0.013 4.013 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.145 4.145 23 N -0.131 5.131 24 N -0.113 5.113 25 H 0.312 0.688 26 H 0.103 0.897 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.174 0.826 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.132 -5.188 15.438 16.326 hybrid contribution 0.566 0.828 -1.734 2.004 sum -0.566 -4.360 13.704 14.392 Atomic orbital electron populations 1.22324 0.94681 1.02813 1.02200 1.21846 0.95793 0.82794 1.01414 1.43887 1.53362 1.11595 1.06034 1.19735 1.32040 1.12453 0.83355 0.90277 1.26056 0.95795 0.96441 1.01342 1.70028 1.22833 1.29402 1.28157 0.84925 0.78231 0.78670 0.76469 1.19031 1.19544 1.20273 1.17271 0.86042 0.86015 0.83082 1.90596 1.55904 1.17578 1.86622 1.21912 1.06758 0.89609 0.96402 1.21993 1.07471 1.02181 0.89475 1.22376 1.01525 0.90552 0.97716 1.19534 0.99407 0.98588 0.83816 1.21567 1.01681 0.94559 0.97122 1.21513 0.98153 1.01963 0.93425 1.21568 0.97195 0.96113 1.00858 1.21523 1.02408 0.97419 0.93647 1.21547 0.95586 1.00781 0.96627 1.72955 1.22711 1.26888 0.90548 1.45288 1.45051 1.14283 1.06693 0.68846 0.89675 0.95318 0.89776 0.87930 0.92719 0.90944 0.82593 0.89347 0.92083 0.92482 0.91183 0.91032 0.90569 0.92311 0.91147 0.91042 0.92581 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.29 8.41 71.98 0.61 -5.69 16 2 C 0.11 4.46 4.81 86.38 0.42 4.88 16 3 N -0.43 -22.30 2.64 -639.70 -1.69 -23.99 16 4 C -0.35 -19.22 9.35 84.11 0.79 -18.44 16 5 H 0.08 4.72 7.37 -2.91 -0.02 4.70 16 6 C 0.01 0.39 4.95 84.96 0.42 0.81 16 7 N -0.87 -41.24 8.50 21.68 0.18 -41.06 16 8 Si 0.99 39.91 29.59 68.60 2.03 41.94 16 9 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 10 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 C 0.49 25.68 7.52 86.55 0.65 26.34 16 13 O -0.62 -37.10 16.58 -4.25 -0.07 -37.17 16 14 C -0.02 -0.79 6.50 40.77 0.27 -0.52 16 15 C -0.18 -7.07 10.01 22.68 0.23 -6.84 16 16 C 0.04 1.23 6.13 43.04 0.26 1.49 16 17 C 0.01 0.16 2.65 -11.54 -0.03 0.13 16 18 C -0.11 -2.43 4.80 30.59 0.15 -2.29 16 19 C -0.11 -1.82 5.92 30.60 0.18 -1.64 16 20 C -0.12 -1.77 5.92 30.60 0.18 -1.58 16 21 C -0.11 -1.78 5.93 30.61 0.18 -1.60 16 22 C -0.11 -2.32 5.19 30.61 0.16 -2.16 16 23 N -0.30 -10.62 12.14 -47.51 -0.58 -11.20 16 24 N -0.39 -14.64 5.12 -48.00 -0.25 -14.88 16 25 H 0.45 15.84 3.58 -220.01 -0.79 15.05 16 26 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.03 1.11 6.44 -2.39 -0.02 1.09 16 28 H 0.08 3.80 6.15 -2.39 -0.01 3.78 16 29 H 0.10 4.56 6.04 -2.39 -0.01 4.55 16 30 H 0.06 2.08 5.10 -2.39 -0.01 2.07 16 31 H 0.28 12.35 8.31 -92.71 -0.77 11.58 16 32 H 0.16 5.86 7.52 -2.91 -0.02 5.84 16 33 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.06 1.43 7.37 -2.39 -0.02 1.41 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -63.39 331.42 4.31 -59.08 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.23 Total: 34.40 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 4.45 Total: -7.11 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -2.33 Total: -91.13 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.07 Total: -37.17 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -63.39 4.31 -59.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159741625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.776 kcal (2) G-P(sol) polarization free energy of solvation -63.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds