Wall clock time and date at job start Tue Mar 31 2020 07:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 120.00089 * 2 1 4 4 C 1.39923 * 119.99665 * 179.97438 * 2 1 3 5 5 C 1.38874 * 120.00110 * 174.25797 * 4 2 1 6 6 C 1.38078 * 119.99283 * 179.81314 * 5 4 2 7 7 C 1.38841 * 120.00438 * 0.44061 * 6 5 4 8 8 N 1.40194 * 119.99679 * 179.77010 * 7 6 5 9 9 C 1.34779 * 119.99905 * 215.15107 * 8 7 6 10 10 O 1.21590 * 120.00087 * 355.53964 * 9 8 7 11 11 N 1.34772 * 119.99826 * 175.53347 * 9 8 7 12 12 C 1.46501 * 120.00068 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47112 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46875 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46955 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00396 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99815 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99870 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47342 * 89.99505 * 19 17 15 21 21 H 1.48502 * 109.47031 * 209.99681 * 19 17 15 22 22 H 1.48503 * 109.47307 * 329.99724 * 19 17 15 23 23 C 1.38840 * 120.00626 * 359.78904 * 7 6 5 24 24 C 1.38066 * 120.00927 * 0.02562 * 23 7 6 25 25 H 1.09003 * 109.47622 * 185.03625 * 1 2 3 26 26 H 1.08996 * 109.47387 * 305.03823 * 1 2 3 27 27 H 1.09004 * 109.47246 * 65.03397 * 1 2 3 28 28 H 1.09003 * 109.46929 * 269.99756 * 3 2 1 29 29 H 1.09000 * 109.47313 * 29.99589 * 3 2 1 30 30 H 1.09001 * 109.47146 * 149.99636 * 3 2 1 31 31 H 1.07995 * 120.00531 * 0.02562 * 5 4 2 32 32 H 1.07998 * 120.00043 * 180.18850 * 6 5 4 33 33 H 0.96994 * 120.00018 * 35.14862 * 8 7 6 34 34 H 0.97003 * 120.00188 * 0.02562 * 11 9 8 35 35 H 1.09005 * 109.46684 * 299.99864 * 12 11 9 36 36 H 1.08992 * 109.47154 * 60.00131 * 12 11 9 37 37 H 1.08999 * 109.47583 * 299.99682 * 13 12 11 38 38 H 1.09004 * 109.47542 * 60.00174 * 13 12 11 39 39 H 1.08997 * 109.47321 * 299.99909 * 14 13 12 40 40 H 1.09000 * 109.46863 * 60.00385 * 14 13 12 41 41 H 0.96997 * 120.00073 * 180.02562 * 18 17 15 42 42 H 1.08005 * 119.99369 * 179.97438 * 23 7 6 43 43 H 1.07997 * 120.00589 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1645 -1.2118 0.0005 5 6 3.5481 -1.2150 -0.1198 6 6 4.2385 -2.4107 -0.1153 7 6 3.5490 -3.6102 0.0002 8 7 4.2498 -4.8244 -0.0002 9 6 3.7079 -5.9151 -0.5774 10 8 2.5787 -5.8680 -1.0258 11 7 4.4176 -7.0580 -0.6576 12 6 3.8288 -8.2434 -1.2855 13 6 4.8356 -9.3948 -1.2457 14 6 4.2203 -10.6330 -1.9010 15 6 5.2122 -11.7670 -1.8623 16 1 6.1842 -11.6193 -1.4156 17 6 4.8789 -12.9929 -2.3984 18 7 3.6954 -13.1728 -2.9429 19 14 6.1081 -14.3987 -2.3499 20 1 5.9236 -15.1746 -1.0972 21 1 5.8899 -15.2875 -3.5193 22 1 7.4879 -13.8516 -2.3945 23 6 2.1654 -3.6074 0.1157 24 6 1.4749 -2.4118 0.1152 25 1 -0.3634 -1.0237 0.0902 26 1 -0.3634 0.5900 0.8414 27 1 -0.3634 0.4338 -0.9317 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1383 0.5139 31 1 4.0842 -0.2822 -0.2134 32 1 5.3147 -2.4132 -0.2059 33 1 5.1247 -4.8795 0.4149 34 1 5.3184 -7.0957 -0.2996 35 1 2.9270 -8.5309 -0.7448 36 1 3.5751 -8.0178 -2.3212 37 1 5.7376 -9.1077 -1.7861 38 1 5.0889 -9.6204 -0.2098 39 1 3.3185 -10.9201 -1.3603 40 1 3.9667 -10.4078 -2.9369 41 1 3.4609 -14.0353 -3.3196 42 1 1.6292 -4.5406 0.2051 43 1 0.3986 -2.4097 0.2046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170902625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:35 Heat of formation + Delta-G solvation = 2.732179 kcal Electronic energy + Delta-G solvation = -21795.494382 eV Core-core repulsion = 18454.749649 eV Total energy + Delta-G solvation = -3340.744733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53108 -39.23268 -36.75285 -35.31611 -34.08089 -33.24585 -31.29433 -31.17012 -28.99998 -28.42066 -26.63226 -24.72378 -23.12293 -22.66758 -21.24786 -20.73714 -20.18963 -18.27376 -17.81310 -16.92610 -16.27202 -15.92712 -15.42850 -15.31764 -14.93995 -14.61826 -14.39692 -14.18995 -14.03964 -13.82423 -13.44219 -12.88156 -12.74262 -12.60441 -12.28995 -12.27109 -12.22536 -11.80612 -11.76293 -11.13029 -10.90489 -10.72145 -10.59244 -10.55365 -9.98593 -9.85319 -9.43711 -9.20767 -9.12074 -8.95338 -8.71488 -8.36511 -7.15584 -6.01114 -4.04190 1.35745 1.49102 2.76006 2.93241 3.28384 3.31280 3.37671 3.40438 3.86735 4.32686 4.45639 4.62130 4.69553 4.90309 4.99054 5.04614 5.24065 5.27162 5.34440 5.34613 5.41724 5.47848 5.52151 5.68766 5.81251 5.92265 6.01711 6.12889 6.18746 6.37178 6.47540 6.57050 6.62343 6.82425 6.90478 7.01607 7.04804 7.09116 7.33807 7.64533 7.77295 7.97747 8.08896 8.38557 8.69697 9.02475 9.59869 11.10138 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.053982 B = 0.002046 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.564836 B =13680.629949 C =14072.089445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.643 5.643 3 C 0.097 3.903 4 C 0.194 3.806 5 C -0.179 4.179 6 C -0.101 4.101 7 C 0.113 3.887 8 N -0.689 5.689 9 C 0.699 3.301 10 O -0.579 6.579 11 N -0.738 5.738 12 C 0.134 3.866 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.069 4.069 24 C -0.180 4.180 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.403 0.597 34 H 0.395 0.605 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.142 0.858 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 28.751 8.592 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.357 5.357 3 C -0.046 4.046 4 C 0.093 3.907 5 C -0.202 4.202 6 C -0.122 4.122 7 C 0.017 3.983 8 N -0.338 5.338 9 C 0.399 3.601 10 O -0.456 6.456 11 N -0.392 5.392 12 C 0.011 3.989 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.090 4.090 24 C -0.202 4.202 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.237 0.763 34 H 0.228 0.772 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.159 0.841 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.365 28.724 8.044 29.923 hybrid contribution 1.506 -0.850 0.280 1.752 sum -0.859 27.874 8.324 29.103 Atomic orbital electron populations 1.21667 0.79735 1.03133 1.00707 1.46259 1.04805 1.02988 1.81621 1.21547 0.97086 0.85061 1.00930 1.17831 0.91215 0.85623 0.96005 1.20371 0.92070 0.97828 1.09945 1.20609 0.99497 0.90781 1.01339 1.17322 0.91500 0.84087 1.05397 1.42568 1.22355 1.08157 1.60673 1.16017 0.84843 0.80244 0.78997 1.90906 1.17724 1.83469 1.53511 1.45402 1.18565 1.11068 1.64125 1.21550 0.97253 0.82656 0.97402 1.21897 0.97498 0.95275 1.01194 1.19032 0.96277 0.90170 0.95926 1.21204 1.00626 0.95912 1.38328 0.92648 1.25036 0.95343 0.98808 0.95326 1.69965 1.20114 1.24070 1.39077 0.86578 0.81535 0.82209 0.77552 1.20674 1.21214 1.19920 1.21145 0.92900 0.98536 0.96453 1.20643 0.99734 0.90626 1.09211 0.90288 0.92885 0.93216 0.93686 0.91842 0.91477 0.85942 0.85933 0.76269 0.77181 0.91806 0.91804 0.92723 0.92724 0.96216 0.96214 0.92928 0.84055 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.63 59.85 0.64 1.24 16 2 N -0.64 -5.52 3.42 -187.49 -0.64 -6.16 16 3 C 0.10 0.58 10.10 59.84 0.60 1.19 16 4 C 0.19 2.06 6.54 -83.69 -0.55 1.51 16 5 C -0.18 -1.78 9.16 -39.40 -0.36 -2.14 16 6 C -0.10 -1.04 9.96 -39.42 -0.39 -1.43 16 7 C 0.11 1.42 6.30 -83.59 -0.53 0.89 16 8 N -0.69 -8.21 5.35 -14.17 -0.08 -8.29 16 9 C 0.70 10.86 8.41 -86.92 -0.73 10.13 16 10 O -0.58 -11.25 13.78 5.29 0.07 -11.18 16 11 N -0.74 -10.65 5.56 -65.23 -0.36 -11.01 16 12 C 0.13 2.38 5.67 -4.04 -0.02 2.36 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.07 -0.94 8.69 -39.42 -0.34 -1.29 16 24 C -0.18 -2.10 9.31 -39.41 -0.37 -2.46 16 25 H 0.08 0.53 5.31 -51.93 -0.28 0.26 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.28 8.07 -51.93 -0.42 -0.14 16 30 H 0.07 0.37 6.46 -51.93 -0.34 0.03 16 31 H 0.12 0.95 6.30 -52.49 -0.33 0.62 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.40 3.36 8.84 -40.82 -0.36 3.00 16 34 H 0.39 4.45 8.49 -40.82 -0.35 4.10 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.14 2.19 6.22 -52.48 -0.33 1.86 16 43 H 0.13 1.25 5.73 -52.49 -0.30 0.95 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -34.00 354.65 -9.15 -43.15 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.46 Total: 3.18 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.74 Total: -5.41 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.34 Total: -51.57 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.00 -9.15 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170902625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.883 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds