Wall clock time and date at job start Tue Mar 31 2020 07:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 120.00089 * 2 1 4 4 C 1.39923 * 119.99665 * 179.97438 * 2 1 3 5 5 C 1.38874 * 120.00110 * 174.25797 * 4 2 1 6 6 C 1.38078 * 119.99283 * 179.81314 * 5 4 2 7 7 C 1.38841 * 120.00438 * 0.44061 * 6 5 4 8 8 N 1.40194 * 119.99679 * 179.77010 * 7 6 5 9 9 C 1.34779 * 119.99905 * 215.15107 * 8 7 6 10 10 O 1.21590 * 120.00087 * 355.53964 * 9 8 7 11 11 N 1.34772 * 119.99826 * 175.53347 * 9 8 7 12 12 C 1.46501 * 120.00068 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47112 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46875 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46955 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00396 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99815 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99870 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47342 * 89.99505 * 19 17 15 21 21 H 1.48502 * 109.47031 * 209.99681 * 19 17 15 22 22 H 1.48503 * 109.47307 * 329.99724 * 19 17 15 23 23 C 1.38840 * 120.00626 * 359.78904 * 7 6 5 24 24 C 1.38066 * 120.00927 * 0.02562 * 23 7 6 25 25 H 1.09003 * 109.47622 * 185.03625 * 1 2 3 26 26 H 1.08996 * 109.47387 * 305.03823 * 1 2 3 27 27 H 1.09004 * 109.47246 * 65.03397 * 1 2 3 28 28 H 1.09003 * 109.46929 * 269.99756 * 3 2 1 29 29 H 1.09000 * 109.47313 * 29.99589 * 3 2 1 30 30 H 1.09001 * 109.47146 * 149.99636 * 3 2 1 31 31 H 1.07995 * 120.00531 * 0.02562 * 5 4 2 32 32 H 1.07998 * 120.00043 * 180.18850 * 6 5 4 33 33 H 0.96994 * 120.00018 * 35.14862 * 8 7 6 34 34 H 0.97003 * 120.00188 * 0.02562 * 11 9 8 35 35 H 1.09005 * 109.46684 * 299.99864 * 12 11 9 36 36 H 1.08992 * 109.47154 * 60.00131 * 12 11 9 37 37 H 1.08999 * 109.47583 * 299.99682 * 13 12 11 38 38 H 1.09004 * 109.47542 * 60.00174 * 13 12 11 39 39 H 1.08997 * 109.47321 * 299.99909 * 14 13 12 40 40 H 1.09000 * 109.46863 * 60.00385 * 14 13 12 41 41 H 0.96997 * 120.00073 * 180.02562 * 18 17 15 42 42 H 1.08005 * 119.99369 * 179.97438 * 23 7 6 43 43 H 1.07997 * 120.00589 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1645 -1.2118 0.0005 5 6 3.5481 -1.2150 -0.1198 6 6 4.2385 -2.4107 -0.1153 7 6 3.5490 -3.6102 0.0002 8 7 4.2498 -4.8244 -0.0002 9 6 3.7079 -5.9151 -0.5774 10 8 2.5787 -5.8680 -1.0258 11 7 4.4176 -7.0580 -0.6576 12 6 3.8288 -8.2434 -1.2855 13 6 4.8356 -9.3948 -1.2457 14 6 4.2203 -10.6330 -1.9010 15 6 5.2122 -11.7670 -1.8623 16 1 6.1842 -11.6193 -1.4156 17 6 4.8789 -12.9929 -2.3984 18 7 3.6954 -13.1728 -2.9429 19 14 6.1081 -14.3987 -2.3499 20 1 5.9236 -15.1746 -1.0972 21 1 5.8899 -15.2875 -3.5193 22 1 7.4879 -13.8516 -2.3945 23 6 2.1654 -3.6074 0.1157 24 6 1.4749 -2.4118 0.1152 25 1 -0.3634 -1.0237 0.0902 26 1 -0.3634 0.5900 0.8414 27 1 -0.3634 0.4338 -0.9317 28 1 2.3792 1.5833 -1.0277 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1383 0.5139 31 1 4.0842 -0.2822 -0.2134 32 1 5.3147 -2.4132 -0.2059 33 1 5.1247 -4.8795 0.4149 34 1 5.3184 -7.0957 -0.2996 35 1 2.9270 -8.5309 -0.7448 36 1 3.5751 -8.0178 -2.3212 37 1 5.7376 -9.1077 -1.7861 38 1 5.0889 -9.6204 -0.2098 39 1 3.3185 -10.9201 -1.3603 40 1 3.9667 -10.4078 -2.9369 41 1 3.4609 -14.0353 -3.3196 42 1 1.6292 -4.5406 0.2051 43 1 0.3986 -2.4097 0.2046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170902625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:35 Heat of formation + Delta-G solvation = -19.768812 kcal Electronic energy + Delta-G solvation = -21796.470098 eV Core-core repulsion = 18454.749649 eV Total energy + Delta-G solvation = -3341.720450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60141 -40.15961 -37.68262 -36.75785 -35.28518 -34.94219 -32.93065 -32.08997 -29.98097 -28.97119 -28.34949 -25.69170 -24.69330 -23.58228 -22.32524 -22.23382 -21.36654 -19.38896 -18.81725 -18.43319 -17.68050 -16.95873 -16.57358 -16.44053 -16.07804 -15.90057 -15.59270 -15.46592 -15.23353 -14.62664 -14.38389 -14.24714 -13.74444 -13.68162 -13.46731 -13.35487 -13.31492 -12.89853 -12.80898 -12.74611 -12.53308 -12.36053 -11.94331 -11.67137 -11.63026 -11.44106 -11.22148 -11.04476 -10.54316 -10.25151 -9.85974 -9.81056 -8.18389 -7.92918 -6.29813 0.51716 0.59265 1.42415 1.43930 1.54741 1.64811 2.09625 2.31120 2.42864 2.98948 3.15319 3.27853 3.91180 4.05778 4.16992 4.24457 4.26090 4.46083 4.49558 4.56030 4.57036 4.59750 4.69449 4.81347 4.91137 4.94472 4.97011 4.98985 5.07984 5.18210 5.22983 5.31640 5.45170 5.50312 5.55117 5.65691 5.72528 5.85593 6.00058 6.06068 6.23735 6.40689 6.58869 6.87571 7.06522 7.39610 7.53450 8.93716 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.053982 B = 0.002046 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.564836 B =13680.629949 C =14072.089445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.647 5.647 3 C 0.091 3.909 4 C 0.192 3.808 5 C -0.180 4.180 6 C -0.090 4.090 7 C 0.085 3.915 8 N -0.669 5.669 9 C 0.695 3.305 10 O -0.623 6.623 11 N -0.725 5.725 12 C 0.150 3.850 13 C -0.100 4.100 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.260 1.260 23 C -0.092 4.092 24 C -0.194 4.194 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.422 0.578 34 H 0.414 0.586 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.069 0.931 39 H -0.008 1.008 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.112 0.888 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 30.711 9.487 32.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.360 5.360 3 C -0.051 4.051 4 C 0.090 3.910 5 C -0.203 4.203 6 C -0.111 4.111 7 C -0.010 4.010 8 N -0.319 5.319 9 C 0.396 3.604 10 O -0.504 6.504 11 N -0.380 5.380 12 C 0.025 3.975 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.184 1.184 23 C -0.113 4.113 24 C -0.217 4.217 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.260 0.740 34 H 0.251 0.749 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.011 0.989 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.130 0.870 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.112 30.749 8.981 32.034 hybrid contribution 0.668 -1.303 0.010 1.465 sum 0.780 29.445 8.992 30.798 Atomic orbital electron populations 1.21797 0.78990 1.03184 1.01839 1.46547 1.05609 1.03117 1.80697 1.21743 0.97587 0.84188 1.01629 1.18005 0.91876 0.86033 0.95083 1.20724 0.91875 0.98793 1.08925 1.20889 1.00872 0.89765 0.99554 1.17520 0.91340 0.84855 1.07293 1.42281 1.22857 1.07042 1.59702 1.16163 0.84341 0.80994 0.78936 1.90888 1.19797 1.84263 1.55404 1.45008 1.19268 1.09864 1.63876 1.21103 0.96402 0.83405 0.96568 1.21592 0.97652 0.93098 1.01483 1.18952 0.95404 0.92619 0.94540 1.21687 1.01398 0.96721 1.38017 0.91443 1.26044 0.97331 1.02004 0.94878 1.70115 1.22336 1.24900 1.40182 0.85400 0.79300 0.78397 0.77641 1.19846 1.21101 1.18396 1.21033 0.93807 0.98074 0.98360 1.20720 1.00242 0.90742 1.09967 0.90962 0.91186 0.92441 0.93200 0.90098 0.90683 0.83294 0.83036 0.74027 0.74946 0.93363 0.93465 0.91261 0.91214 0.98920 0.98952 0.92847 0.87039 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.63 127.77 1.36 2.37 16 2 N -0.65 -9.84 3.42 -747.10 -2.55 -12.39 16 3 C 0.09 0.83 10.10 127.77 1.29 2.12 16 4 C 0.19 3.84 6.54 38.16 0.25 4.09 16 5 C -0.18 -3.13 9.16 22.38 0.20 -2.93 16 6 C -0.09 -1.65 9.96 22.38 0.22 -1.43 16 7 C 0.09 2.10 6.30 38.09 0.24 2.34 16 8 N -0.67 -15.37 5.35 -317.02 -1.70 -17.07 16 9 C 0.70 21.74 8.41 179.06 1.51 23.25 16 10 O -0.62 -25.33 13.78 -4.00 -0.06 -25.39 16 11 N -0.72 -20.45 5.56 -478.54 -2.66 -23.11 16 12 C 0.15 5.40 5.67 86.38 0.49 5.89 16 13 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 14 C 0.02 1.18 4.97 29.85 0.15 1.33 16 15 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 17 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 18 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 19 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 23 C -0.09 -2.60 8.69 22.37 0.19 -2.41 16 24 C -0.19 -4.62 9.31 22.38 0.21 -4.41 16 25 H 0.07 0.96 5.31 -2.39 -0.01 0.95 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.47 8.07 -2.39 -0.02 0.45 16 30 H 0.07 0.57 6.46 -2.39 -0.02 0.55 16 31 H 0.15 1.75 6.30 -2.91 -0.02 1.74 16 32 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.42 6.16 8.84 -92.71 -0.82 5.34 16 34 H 0.41 8.48 8.49 -92.71 -0.79 7.69 16 35 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.11 3.78 6.22 -2.91 -0.02 3.76 16 43 H 0.13 2.76 5.73 -2.91 -0.02 2.75 16 Total: -1.00 -75.69 354.65 1.74 -73.96 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -0.58 Total: 18.50 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.97 Total: -3.28 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -6.62 Total: -109.75 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.39 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.69 1.74 -73.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170902625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.187 kcal (2) G-P(sol) polarization free energy of solvation -75.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds