Wall clock time and date at job start Tue Mar 31 2020 07:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00129 * 2 1 4 4 C 1.39926 * 110.99756 * 236.04880 * 2 1 3 5 5 C 1.38707 * 120.10099 * 59.99851 * 4 2 1 6 6 C 1.38225 * 119.99795 * 180.02562 * 5 4 2 7 7 C 1.38275 * 120.18792 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.19810 * 359.97438 * 7 6 5 9 9 C 1.38658 * 120.00359 * 359.67706 * 8 7 6 10 10 N 1.40200 * 120.09870 * 180.29268 * 9 8 7 11 11 C 1.34780 * 119.99967 * 24.77478 * 10 9 8 12 12 O 1.21601 * 119.99783 * 5.63618 * 11 10 9 13 13 N 1.34773 * 120.00244 * 185.63348 * 11 10 9 14 14 C 1.46492 * 120.00145 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47540 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47324 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47098 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99725 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00362 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99709 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00129 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46921 * 90.00301 * 21 19 17 23 23 H 1.48501 * 109.47222 * 210.00063 * 21 19 17 24 24 H 1.48499 * 109.47426 * 330.00090 * 21 19 17 25 25 H 1.09003 * 109.47221 * 183.95251 * 1 2 3 26 26 H 1.09004 * 109.47432 * 63.95101 * 1 2 3 27 27 H 1.09002 * 109.47073 * 303.95245 * 1 2 3 28 28 H 1.09002 * 109.47308 * 56.04675 * 3 2 1 29 29 H 1.09004 * 109.47281 * 176.04611 * 3 2 1 30 30 H 1.09001 * 109.47252 * 296.05034 * 3 2 1 31 31 H 1.08001 * 120.00067 * 0.02918 * 5 4 2 32 32 H 1.07991 * 119.90934 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.90737 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.00353 * 180.02562 * 8 7 6 35 35 H 0.96993 * 120.00315 * 204.77612 * 10 9 8 36 36 H 0.97004 * 119.99911 * 0.02562 * 13 11 10 37 37 H 1.09005 * 109.47531 * 300.00064 * 14 13 11 38 38 H 1.09003 * 109.47345 * 60.00385 * 14 13 11 39 39 H 1.08996 * 109.47181 * 300.00553 * 15 14 13 40 40 H 1.09003 * 109.46340 * 59.99950 * 15 14 13 41 41 H 1.09004 * 109.47303 * 299.99748 * 16 15 14 42 42 H 1.08993 * 109.47034 * 60.00282 * 16 15 14 43 43 H 0.96999 * 119.99795 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9704 -0.7296 -1.0836 5 6 1.6594 -0.3503 -2.3811 6 6 2.1555 -1.0729 -3.4500 7 6 2.9615 -2.1747 -3.2302 8 6 3.2764 -2.5597 -1.9404 9 6 2.7892 -1.8365 -0.8624 10 7 3.1123 -2.2216 0.4464 11 6 4.2357 -2.9276 0.6832 12 8 5.0205 -3.1425 -0.2205 13 7 4.4893 -3.3953 1.9215 14 6 5.7106 -4.1622 2.1789 15 6 5.7552 -4.5707 3.6527 16 6 7.0311 -5.3711 3.9217 17 6 7.0747 -5.7740 5.3732 18 1 6.2728 -5.4874 6.0375 19 6 8.1388 -6.5076 5.8535 20 7 9.1160 -6.8552 5.0449 21 14 8.1931 -7.0063 7.6528 22 1 7.5294 -8.3240 7.8214 23 1 9.6068 -7.1037 8.0970 24 1 7.4864 -5.9878 8.4704 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3634 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 1.5898 1.9163 0.8524 29 1 3.0828 1.3432 0.0709 30 1 1.7043 1.8724 -0.9233 31 1 1.0298 0.5096 -2.5562 32 1 1.9128 -0.7761 -4.4596 33 1 3.3463 -2.7362 -4.0687 34 1 3.9066 -3.4206 -1.7724 35 1 2.5274 -1.9799 1.1814 36 1 3.8631 -3.2241 2.6422 37 1 5.7176 -5.0551 1.5537 38 1 6.5809 -3.5486 1.9460 39 1 5.7484 -3.6778 4.2777 40 1 4.8850 -5.1842 3.8861 41 1 7.0383 -6.2642 3.2968 42 1 7.9010 -4.7573 3.6884 43 1 9.8644 -7.3716 5.3827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171367943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:39 Heat of formation + Delta-G solvation = -0.195555 kcal Electronic energy + Delta-G solvation = -22404.556619 eV Core-core repulsion = 19063.684929 eV Total energy + Delta-G solvation = -3340.871689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84032 -39.32828 -36.72632 -35.58254 -34.59507 -33.32863 -31.30656 -30.15013 -29.32864 -27.92239 -26.59251 -24.79677 -23.60923 -22.42155 -21.23798 -20.85013 -20.26614 -18.24913 -17.70938 -16.79230 -16.29987 -15.82610 -15.42039 -15.27172 -15.10668 -14.57527 -14.38482 -14.33785 -14.08619 -13.78885 -13.60128 -12.93732 -12.55181 -12.50198 -12.28619 -12.04434 -12.03096 -11.82270 -11.75304 -11.51040 -10.91440 -10.73130 -10.59147 -10.52142 -9.98273 -9.85859 -9.44832 -9.12900 -8.95520 -8.85216 -8.83682 -8.37113 -7.99502 -6.01752 -4.04827 1.12641 1.27548 2.69489 3.17870 3.30979 3.37403 3.40164 3.52740 3.73972 4.27744 4.45016 4.70910 4.80423 4.92686 4.96450 5.06853 5.15566 5.20213 5.34123 5.39190 5.46907 5.51289 5.57367 5.67750 5.76076 5.79238 6.05193 6.15768 6.18028 6.38327 6.43096 6.50069 6.53592 6.60677 6.71156 6.81530 6.99726 7.04903 7.19202 7.63739 7.76355 7.97105 8.03571 8.37875 8.61571 9.01869 9.59368 11.09588 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029312 B = 0.002507 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.997672 B =11167.955547 C =11869.535256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.508 5.508 3 C 0.030 3.970 4 C 0.040 3.960 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.098 4.098 8 C -0.130 4.130 9 C 0.204 3.796 10 N -0.676 5.676 11 C 0.698 3.302 12 O -0.577 6.577 13 N -0.734 5.734 14 C 0.134 3.866 15 C -0.121 4.121 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.412 0.588 36 H 0.396 0.604 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.032 15.080 -13.814 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.229 5.229 3 C -0.117 4.117 4 C -0.057 4.057 5 C -0.147 4.147 6 C -0.160 4.160 7 C -0.117 4.117 8 C -0.151 4.151 9 C 0.105 3.895 10 N -0.321 5.321 11 C 0.398 3.602 12 O -0.454 6.454 13 N -0.388 5.388 14 C 0.011 3.989 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.171 0.829 35 H 0.249 0.751 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.924 14.507 -14.069 27.012 hybrid contribution -0.752 0.379 0.983 1.295 sum -18.676 14.885 -13.086 27.233 Atomic orbital electron populations 1.22478 0.86093 1.02659 1.00828 1.59513 1.08293 1.14338 1.40795 1.22435 1.01215 0.87330 1.00698 1.18392 1.02662 0.95244 0.89388 1.21272 1.00943 1.00131 0.92389 1.20937 0.99737 0.96823 0.98468 1.21110 0.97184 0.96712 0.96651 1.21533 1.01332 1.01291 0.90958 1.17413 0.95789 0.92261 0.83987 1.42609 1.24809 1.56612 1.08102 1.16040 0.81233 0.78892 0.83989 1.90887 1.48007 1.63097 1.43454 1.45423 1.26484 1.58031 1.08868 1.21578 0.84268 0.94589 0.98483 1.21899 1.02000 1.00405 0.91560 1.19026 0.90765 0.94770 0.96798 1.21202 1.06020 1.34030 0.94810 0.92647 1.25029 0.95649 0.96046 0.97756 1.69965 1.09858 1.38380 1.35072 0.86580 0.77200 0.78914 0.85209 1.20659 1.21209 1.19903 0.91158 0.95073 0.90927 0.90941 0.91089 0.95093 0.86362 0.86262 0.85711 0.82934 0.75136 0.77029 0.91700 0.91743 0.92693 0.92688 0.96225 0.96215 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.35 60.06 0.56 0.74 16 2 N -0.51 -4.52 4.32 -186.66 -0.81 -5.33 16 3 C 0.03 0.23 9.39 60.06 0.56 0.80 16 4 C 0.04 0.42 4.75 -83.54 -0.40 0.03 16 5 C -0.13 -1.20 8.57 -39.41 -0.34 -1.54 16 6 C -0.14 -1.31 10.04 -39.57 -0.40 -1.71 16 7 C -0.10 -1.05 10.04 -39.57 -0.40 -1.45 16 8 C -0.13 -1.72 8.72 -39.42 -0.34 -2.07 16 9 C 0.20 2.58 6.45 -83.42 -0.54 2.05 16 10 N -0.68 -8.38 5.29 -14.07 -0.07 -8.46 16 11 C 0.70 10.76 8.37 -86.92 -0.73 10.03 16 12 O -0.58 -10.91 13.51 5.28 0.07 -10.84 16 13 N -0.73 -10.56 5.56 -65.22 -0.36 -10.93 16 14 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 15 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.20 7.13 -51.93 -0.37 -0.17 16 27 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.22 7.35 -51.93 -0.38 -0.16 16 31 H 0.12 0.91 7.02 -52.49 -0.37 0.54 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.15 2.33 5.78 -52.49 -0.30 2.03 16 35 H 0.41 4.18 8.29 -40.82 -0.34 3.84 16 36 H 0.40 4.56 8.49 -40.82 -0.35 4.21 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -32.35 356.59 -9.53 -41.88 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.72 Total: 4.07 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.73 Total: -6.14 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.51 Total: -50.78 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.35 -9.53 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171367943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.688 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds