Wall clock time and date at job start Tue Mar 31 2020 07:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00129 * 2 1 4 4 C 1.39926 * 110.99756 * 236.04880 * 2 1 3 5 5 C 1.38707 * 120.10099 * 59.99851 * 4 2 1 6 6 C 1.38225 * 119.99795 * 180.02562 * 5 4 2 7 7 C 1.38275 * 120.18792 * 0.02562 * 6 5 4 8 8 C 1.38245 * 120.19810 * 359.97438 * 7 6 5 9 9 C 1.38658 * 120.00359 * 359.67706 * 8 7 6 10 10 N 1.40200 * 120.09870 * 180.29268 * 9 8 7 11 11 C 1.34780 * 119.99967 * 24.77478 * 10 9 8 12 12 O 1.21601 * 119.99783 * 5.63618 * 11 10 9 13 13 N 1.34773 * 120.00244 * 185.63348 * 11 10 9 14 14 C 1.46492 * 120.00145 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47540 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47324 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47098 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99725 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00362 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99709 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00129 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46921 * 90.00301 * 21 19 17 23 23 H 1.48501 * 109.47222 * 210.00063 * 21 19 17 24 24 H 1.48499 * 109.47426 * 330.00090 * 21 19 17 25 25 H 1.09003 * 109.47221 * 183.95251 * 1 2 3 26 26 H 1.09004 * 109.47432 * 63.95101 * 1 2 3 27 27 H 1.09002 * 109.47073 * 303.95245 * 1 2 3 28 28 H 1.09002 * 109.47308 * 56.04675 * 3 2 1 29 29 H 1.09004 * 109.47281 * 176.04611 * 3 2 1 30 30 H 1.09001 * 109.47252 * 296.05034 * 3 2 1 31 31 H 1.08001 * 120.00067 * 0.02918 * 5 4 2 32 32 H 1.07991 * 119.90934 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.90737 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.00353 * 180.02562 * 8 7 6 35 35 H 0.96993 * 120.00315 * 204.77612 * 10 9 8 36 36 H 0.97004 * 119.99911 * 0.02562 * 13 11 10 37 37 H 1.09005 * 109.47531 * 300.00064 * 14 13 11 38 38 H 1.09003 * 109.47345 * 60.00385 * 14 13 11 39 39 H 1.08996 * 109.47181 * 300.00553 * 15 14 13 40 40 H 1.09003 * 109.46340 * 59.99950 * 15 14 13 41 41 H 1.09004 * 109.47303 * 299.99748 * 16 15 14 42 42 H 1.08993 * 109.47034 * 60.00282 * 16 15 14 43 43 H 0.96999 * 119.99795 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9704 -0.7296 -1.0836 5 6 1.6594 -0.3503 -2.3811 6 6 2.1555 -1.0729 -3.4500 7 6 2.9615 -2.1747 -3.2302 8 6 3.2764 -2.5597 -1.9404 9 6 2.7892 -1.8365 -0.8624 10 7 3.1123 -2.2216 0.4464 11 6 4.2357 -2.9276 0.6832 12 8 5.0205 -3.1425 -0.2205 13 7 4.4893 -3.3953 1.9215 14 6 5.7106 -4.1622 2.1789 15 6 5.7552 -4.5707 3.6527 16 6 7.0311 -5.3711 3.9217 17 6 7.0747 -5.7740 5.3732 18 1 6.2728 -5.4874 6.0375 19 6 8.1388 -6.5076 5.8535 20 7 9.1160 -6.8552 5.0449 21 14 8.1931 -7.0063 7.6528 22 1 7.5294 -8.3240 7.8214 23 1 9.6068 -7.1037 8.0970 24 1 7.4864 -5.9878 8.4704 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3634 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 1.5898 1.9163 0.8524 29 1 3.0828 1.3432 0.0709 30 1 1.7043 1.8724 -0.9233 31 1 1.0298 0.5096 -2.5562 32 1 1.9128 -0.7761 -4.4596 33 1 3.3463 -2.7362 -4.0687 34 1 3.9066 -3.4206 -1.7724 35 1 2.5274 -1.9799 1.1814 36 1 3.8631 -3.2241 2.6422 37 1 5.7176 -5.0551 1.5537 38 1 6.5809 -3.5486 1.9460 39 1 5.7484 -3.6778 4.2777 40 1 4.8850 -5.1842 3.8861 41 1 7.0383 -6.2642 3.2968 42 1 7.9010 -4.7573 3.6884 43 1 9.8644 -7.3716 5.3827 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171367943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:39 Heat of formation + Delta-G solvation = -21.586333 kcal Electronic energy + Delta-G solvation = -22405.484192 eV Core-core repulsion = 19063.684929 eV Total energy + Delta-G solvation = -3341.799263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85504 -40.31806 -37.54561 -36.96946 -35.73338 -35.20964 -33.05254 -30.97998 -30.34562 -28.47114 -28.35713 -25.49732 -25.20862 -23.63825 -22.33658 -22.02216 -21.66014 -19.34980 -18.80744 -18.37640 -17.54895 -16.96525 -16.61054 -16.37036 -16.13111 -15.95630 -15.62917 -15.39922 -15.31229 -14.69564 -14.51659 -14.25167 -13.79368 -13.72624 -13.48069 -13.17252 -13.10286 -12.84748 -12.74348 -12.60564 -12.53863 -12.36830 -12.28938 -11.68257 -11.61696 -11.48440 -11.22546 -11.03884 -10.54548 -10.16990 -9.73431 -9.52594 -8.92242 -8.18773 -6.30115 0.30235 0.40742 1.42230 1.43711 1.53912 1.56525 2.02091 2.42629 2.82148 2.89530 3.15148 3.19791 3.96926 4.13602 4.17631 4.20506 4.23390 4.40721 4.43281 4.47539 4.56327 4.57881 4.65041 4.73639 4.88620 4.96042 4.97970 4.99374 5.02828 5.16850 5.23546 5.36681 5.42459 5.53154 5.54256 5.64473 5.72184 5.85265 5.86566 5.92811 5.98438 6.23509 6.40410 6.87198 6.97600 7.39404 7.43916 8.93462 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029312 B = 0.002507 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.997672 B =11167.955547 C =11869.535256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.519 5.519 3 C 0.031 3.969 4 C 0.045 3.955 5 C -0.126 4.126 6 C -0.132 4.132 7 C -0.105 4.105 8 C -0.154 4.154 9 C 0.175 3.825 10 N -0.660 5.660 11 C 0.697 3.303 12 O -0.616 6.616 13 N -0.723 5.723 14 C 0.149 3.851 15 C -0.101 4.101 16 C 0.024 3.976 17 C -0.540 4.540 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.260 1.260 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.424 0.576 36 H 0.413 0.587 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.069 0.931 41 H -0.007 1.007 42 H -0.007 1.007 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.590 16.818 -13.252 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.240 5.240 3 C -0.116 4.116 4 C -0.051 4.051 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.124 4.124 8 C -0.175 4.175 9 C 0.077 3.923 10 N -0.307 5.307 11 C 0.397 3.603 12 O -0.496 6.496 13 N -0.378 5.378 14 C 0.025 3.975 15 C -0.139 4.139 16 C -0.014 4.014 17 C -0.578 4.578 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.184 1.184 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.262 0.738 36 H 0.250 0.750 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.552 16.280 -13.493 29.487 hybrid contribution -0.006 -0.103 0.708 0.715 sum -20.558 16.178 -12.785 29.117 Atomic orbital electron populations 1.22527 0.84578 1.02837 1.02013 1.59501 1.09586 1.14790 1.40159 1.22449 1.00196 0.86915 1.02007 1.18506 1.01594 0.94453 0.90569 1.21594 1.00642 1.00583 0.91784 1.21287 0.98210 0.95604 1.00021 1.21316 0.97512 0.97523 0.96024 1.21435 1.02225 1.01275 0.92611 1.17644 0.97361 0.93665 0.83590 1.42349 1.23824 1.55753 1.08742 1.16139 0.81644 0.78983 0.83528 1.90873 1.49561 1.64553 1.44663 1.45052 1.25807 1.57577 1.09333 1.21141 0.85142 0.94149 0.97067 1.21594 0.99324 1.00194 0.92742 1.18937 0.92769 0.94080 0.95612 1.21684 1.06307 1.33834 0.96000 0.91508 1.26024 0.95249 0.96077 1.02799 1.70112 1.10677 1.39337 1.37467 0.85415 0.77290 0.78934 0.79204 1.19817 1.21080 1.18411 0.91596 0.94176 0.89358 0.89230 0.92858 0.94112 0.83897 0.83295 0.84311 0.85858 0.73802 0.75025 0.93084 0.93265 0.91328 0.91261 0.98872 0.98902 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.35 127.69 1.19 1.49 16 2 N -0.52 -8.11 4.32 -744.48 -3.22 -11.32 16 3 C 0.03 0.41 9.39 127.69 1.20 1.61 16 4 C 0.05 0.90 4.75 38.25 0.18 1.08 16 5 C -0.13 -2.05 8.57 22.38 0.19 -1.86 16 6 C -0.13 -2.16 10.04 22.28 0.22 -1.94 16 7 C -0.11 -2.20 10.04 22.28 0.22 -1.98 16 8 C -0.15 -4.22 8.72 22.37 0.20 -4.03 16 9 C 0.17 4.42 6.45 38.19 0.25 4.67 16 10 N -0.66 -16.35 5.29 -316.67 -1.67 -18.02 16 11 C 0.70 21.94 8.37 179.05 1.50 23.44 16 12 O -0.62 -24.48 13.51 -4.04 -0.05 -24.54 16 13 N -0.72 -20.68 5.56 -478.52 -2.66 -23.34 16 14 C 0.15 5.35 5.67 86.38 0.49 5.84 16 15 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 16 C 0.02 1.24 4.97 29.85 0.15 1.39 16 17 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 18 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 20 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 21 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.04 0.37 7.13 -2.39 -0.02 0.35 16 27 H 0.09 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 29 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.04 0.46 7.35 -2.39 -0.02 0.44 16 31 H 0.14 1.63 7.02 -2.91 -0.02 1.61 16 32 H 0.15 1.55 8.06 -2.92 -0.02 1.53 16 33 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.12 4.09 5.78 -2.91 -0.02 4.07 16 35 H 0.42 8.20 8.29 -92.71 -0.77 7.43 16 36 H 0.41 8.95 8.49 -92.71 -0.79 8.16 16 37 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -71.82 356.59 0.81 -71.01 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -0.54 Total: 21.14 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.65 Total: -3.71 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -7.27 Total: -109.80 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.54 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -71.82 0.81 -71.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171367943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.423 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds