Wall clock time and date at job start Tue Mar 31 2020 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36339 * 125.63574 * 2 1 4 4 C 1.34852 * 108.21653 * 180.02562 * 3 2 1 5 5 C 1.40887 * 107.42097 * 0.02562 * 4 3 2 6 6 C 1.34852 * 107.41252 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.88993 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46461 * 126.97772 * 7 6 5 9 9 C 1.53032 * 109.46288 * 246.95241 * 7 6 5 10 10 C 1.53122 * 109.27885 * 179.19284 * 9 7 6 11 11 C 1.53115 * 109.15868 * 302.34511 * 10 9 7 12 12 C 1.53032 * 109.28348 * 57.65480 * 11 10 9 13 13 N 1.46847 * 109.52114 * 300.82019 * 12 11 10 14 14 C 1.46898 * 110.99963 * 185.83610 * 13 12 11 15 15 C 1.50695 * 109.47449 * 304.45068 * 14 13 12 16 16 O 1.21293 * 119.99788 * 353.74836 * 15 14 13 17 17 N 1.34775 * 120.00302 * 173.74119 * 15 14 13 18 18 C 1.37105 * 120.00142 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99998 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99937 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00082 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99892 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47350 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47164 * 119.99962 * 22 20 18 25 25 H 1.48503 * 109.46902 * 240.00000 * 22 20 18 26 26 H 1.08998 * 109.47036 * 89.97258 * 1 2 3 27 27 H 1.09000 * 109.46962 * 209.97418 * 1 2 3 28 28 H 1.09004 * 109.46834 * 329.97269 * 1 2 3 29 29 H 1.08001 * 125.89039 * 359.75536 * 3 2 1 30 30 H 1.07999 * 126.28938 * 179.97438 * 4 3 2 31 31 H 1.07998 * 126.29680 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.50030 * 299.13296 * 9 7 6 33 33 H 1.09002 * 109.50591 * 59.25300 * 9 7 6 34 34 H 1.09002 * 109.52185 * 182.43845 * 10 9 7 35 35 H 1.08999 * 109.51900 * 62.24981 * 10 9 7 36 36 H 1.09002 * 109.50281 * 297.70893 * 11 10 9 37 37 H 1.09004 * 109.49840 * 177.59365 * 11 10 9 38 38 H 1.08999 * 109.46739 * 180.80154 * 12 11 10 39 39 H 1.09004 * 109.45297 * 60.82467 * 12 11 10 40 40 H 1.08993 * 109.47272 * 64.45627 * 14 13 12 41 41 H 1.09002 * 109.47094 * 184.45435 * 14 13 12 42 42 H 0.97002 * 120.00125 * 0.02562 * 17 15 14 43 43 H 0.97003 * 120.00083 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 -0.0015 6 6 2.2594 -1.1081 -0.0009 7 6 1.7818 -2.5374 -0.0011 8 1 1.0809 -2.6862 0.8203 9 6 1.0838 -2.8417 -1.3285 10 6 0.6181 -4.3004 -1.3321 11 6 1.8261 -5.2140 -1.1071 12 6 2.5027 -4.8411 0.2139 13 7 2.9304 -3.4371 0.1669 14 6 3.7061 -3.0827 1.3630 15 6 2.8970 -3.3915 2.5962 16 8 1.7441 -3.7530 2.4903 17 7 3.4544 -3.2660 3.8168 18 6 2.7184 -3.5474 4.9388 19 1 1.6920 -3.8700 4.8445 20 6 3.2930 -3.4175 6.1973 21 7 4.5417 -3.0245 6.3121 22 14 2.2904 -3.8016 7.7259 23 1 0.9222 -4.2201 7.3283 24 1 2.9437 -4.8990 8.4835 25 1 2.2081 -2.5903 8.5811 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5143 29 1 1.9172 2.1324 -0.0037 30 1 4.4166 1.3436 -0.0011 31 1 4.4166 -1.3438 -0.0018 32 1 0.2222 -2.1844 -1.4455 33 1 1.7801 -2.6800 -2.1513 34 1 0.1588 -4.5337 -2.2926 35 1 -0.1078 -4.4530 -0.5334 36 1 2.5341 -5.0896 -1.9265 37 1 1.4948 -6.2517 -1.0660 38 1 3.3716 -5.4804 0.3701 39 1 1.7982 -4.9788 1.0342 40 1 4.6304 -3.6601 1.3808 41 1 3.9427 -2.0189 1.3406 42 1 4.3764 -2.9766 3.9016 43 1 4.9429 -2.9341 7.1906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175142744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:08 Heat of formation + Delta-G solvation = 30.225327 kcal Electronic energy + Delta-G solvation = -24589.750036 eV Core-core repulsion = 21250.197495 eV Total energy + Delta-G solvation = -3339.552541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20926 -39.15218 -37.18554 -34.07128 -33.33061 -32.33995 -31.39402 -31.23847 -27.66865 -27.25409 -26.13364 -24.64368 -22.78568 -22.49128 -20.39783 -19.52801 -19.27666 -18.75157 -17.83861 -16.77970 -15.77622 -15.16651 -15.14288 -14.65930 -14.54618 -14.41266 -14.00780 -13.83125 -13.49792 -13.08455 -13.01135 -12.76639 -12.60034 -12.30981 -12.11235 -11.87222 -11.65432 -11.58940 -11.47883 -11.17002 -10.94303 -10.55506 -10.43636 -10.34677 -10.24760 -10.16358 -10.04654 -9.44922 -9.12795 -8.24397 -7.95843 -7.58443 -7.31544 -6.42011 -3.83071 2.56450 3.13851 3.17953 3.24741 3.31334 3.36936 3.91241 4.16766 4.36654 4.90420 4.92845 5.03804 5.14491 5.20639 5.24371 5.26681 5.31101 5.46131 5.50126 5.58865 5.80564 5.87832 5.92919 5.97810 6.02210 6.05445 6.12819 6.19258 6.25899 6.30762 6.40198 6.44191 6.57447 6.61864 6.69960 6.85706 7.27912 7.47283 7.49190 7.53727 7.66159 7.72134 8.05294 8.60407 9.16519 9.54720 10.05355 10.74732 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.005390 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.014242 B = 5193.345150 C = 6056.847529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.446 5.446 3 C -0.028 4.028 4 C -0.200 4.200 5 C -0.195 4.195 6 C 0.037 3.963 7 C 0.144 3.856 8 H 0.081 0.919 9 C -0.104 4.104 10 C -0.118 4.118 11 C -0.112 4.112 12 C 0.034 3.966 13 N -0.498 5.498 14 C 0.011 3.989 15 C 0.413 3.587 16 O -0.599 6.599 17 N -0.557 5.557 18 C -0.300 4.300 19 H 0.101 0.899 20 C 0.023 3.977 21 N -0.898 5.898 22 Si 0.927 3.073 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.393 0.607 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 3.837 -14.181 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.123 5.123 3 C -0.157 4.157 4 C -0.225 4.225 5 C -0.219 4.219 6 C -0.075 4.075 7 C 0.035 3.965 8 H 0.099 0.901 9 C -0.143 4.143 10 C -0.156 4.156 11 C -0.150 4.150 12 C -0.094 4.094 13 N -0.222 5.222 14 C -0.120 4.120 15 C 0.199 3.801 16 O -0.487 6.487 17 N -0.192 5.192 18 C -0.430 4.430 19 H 0.119 0.881 20 C -0.179 4.179 21 N -0.539 5.539 22 Si 0.755 3.245 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.173 0.827 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.137 0.863 42 H 0.226 0.774 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.006 3.685 -14.484 15.762 hybrid contribution -0.327 0.046 1.742 1.773 sum -5.334 3.731 -12.742 14.308 Atomic orbital electron populations 1.21989 0.78098 1.04324 1.02556 1.43741 1.05715 1.05715 1.57083 1.21645 0.90686 0.90914 1.12463 1.20874 0.95671 0.95332 1.10660 1.20794 0.95777 0.94446 1.10907 1.20253 0.90463 0.88239 1.08551 1.20045 0.92934 0.85700 0.97870 0.90130 1.21589 0.99054 0.96224 0.97389 1.21551 0.98026 0.94952 1.01054 1.21552 0.96969 0.98334 0.98171 1.22414 1.00594 0.88184 0.98193 1.62252 1.21576 1.02822 1.35523 1.22724 0.96907 1.04946 0.87427 1.21106 0.88857 0.84749 0.85372 1.90356 1.18692 1.53520 1.86148 1.42039 1.14410 1.57965 1.04773 1.19737 0.97675 1.42231 0.83402 0.88077 1.25269 0.96085 0.97213 0.99300 1.69622 1.12291 1.46818 1.25148 0.85836 0.79728 0.78008 0.80970 1.19346 1.20685 1.20737 0.91337 0.89828 0.90219 0.82716 0.85092 0.83671 0.92611 0.91369 0.92408 0.92011 0.91896 0.92076 0.91668 0.89837 0.89578 0.86267 0.77376 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 9.81 59.85 0.59 1.40 16 2 N -0.45 -6.60 3.15 -119.89 -0.38 -6.98 16 3 C -0.03 -0.40 11.43 -16.75 -0.19 -0.59 16 4 C -0.20 -3.03 10.86 -39.78 -0.43 -3.46 16 5 C -0.20 -3.24 8.15 -39.78 -0.32 -3.57 16 6 C 0.04 0.62 5.68 -81.79 -0.46 0.15 16 7 C 0.14 2.43 1.44 -68.87 -0.10 2.33 16 8 H 0.08 1.64 5.80 -51.93 -0.30 1.34 16 9 C -0.10 -1.45 5.29 -26.65 -0.14 -1.59 16 10 C -0.12 -1.55 6.00 -26.61 -0.16 -1.71 16 11 C -0.11 -1.54 6.09 -26.66 -0.16 -1.70 16 12 C 0.03 0.57 4.93 -3.84 -0.02 0.55 16 13 N -0.50 -8.60 4.43 -229.52 -1.02 -9.61 16 14 C 0.01 0.21 4.94 -4.98 -0.02 0.18 16 15 C 0.41 9.71 7.18 -10.99 -0.08 9.63 16 16 O -0.60 -15.41 11.24 5.55 0.06 -15.35 16 17 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 18 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 22 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H 0.07 0.63 7.97 -51.93 -0.41 0.22 16 27 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.15 2.34 6.23 -52.49 -0.33 2.02 16 32 H 0.06 0.69 6.85 -51.93 -0.36 0.34 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.08 8.12 -51.93 -0.42 0.65 16 39 H 0.08 1.71 5.39 -51.93 -0.28 1.43 16 40 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.12 2.21 3.94 -51.93 -0.20 2.00 16 42 H 0.39 9.81 7.90 -40.82 -0.32 9.48 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -31.03 333.39 -8.75 -39.78 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.34 Total: 15.69 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.75 Total: -6.40 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.73 Total: -54.91 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.06 Total: -15.35 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.03 -8.75 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175142744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.005 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds