Wall clock time and date at job start Tue Mar 31 2020 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36339 * 125.63574 * 2 1 4 4 C 1.34852 * 108.21653 * 180.02562 * 3 2 1 5 5 C 1.40887 * 107.42097 * 0.02562 * 4 3 2 6 6 C 1.34852 * 107.41252 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.88993 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46461 * 126.97772 * 7 6 5 9 9 C 1.53032 * 109.46288 * 246.95241 * 7 6 5 10 10 C 1.53122 * 109.27885 * 179.19284 * 9 7 6 11 11 C 1.53115 * 109.15868 * 302.34511 * 10 9 7 12 12 C 1.53032 * 109.28348 * 57.65480 * 11 10 9 13 13 N 1.46847 * 109.52114 * 300.82019 * 12 11 10 14 14 C 1.46898 * 110.99963 * 185.83610 * 13 12 11 15 15 C 1.50695 * 109.47449 * 304.45068 * 14 13 12 16 16 O 1.21293 * 119.99788 * 353.74836 * 15 14 13 17 17 N 1.34775 * 120.00302 * 173.74119 * 15 14 13 18 18 C 1.37105 * 120.00142 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99998 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99937 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00082 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99892 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47350 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47164 * 119.99962 * 22 20 18 25 25 H 1.48503 * 109.46902 * 240.00000 * 22 20 18 26 26 H 1.08998 * 109.47036 * 89.97258 * 1 2 3 27 27 H 1.09000 * 109.46962 * 209.97418 * 1 2 3 28 28 H 1.09004 * 109.46834 * 329.97269 * 1 2 3 29 29 H 1.08001 * 125.89039 * 359.75536 * 3 2 1 30 30 H 1.07999 * 126.28938 * 179.97438 * 4 3 2 31 31 H 1.07998 * 126.29680 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.50030 * 299.13296 * 9 7 6 33 33 H 1.09002 * 109.50591 * 59.25300 * 9 7 6 34 34 H 1.09002 * 109.52185 * 182.43845 * 10 9 7 35 35 H 1.08999 * 109.51900 * 62.24981 * 10 9 7 36 36 H 1.09002 * 109.50281 * 297.70893 * 11 10 9 37 37 H 1.09004 * 109.49840 * 177.59365 * 11 10 9 38 38 H 1.08999 * 109.46739 * 180.80154 * 12 11 10 39 39 H 1.09004 * 109.45297 * 60.82467 * 12 11 10 40 40 H 1.08993 * 109.47272 * 64.45627 * 14 13 12 41 41 H 1.09002 * 109.47094 * 184.45435 * 14 13 12 42 42 H 0.97002 * 120.00125 * 0.02562 * 17 15 14 43 43 H 0.97003 * 120.00083 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7044 -0.0006 5 6 3.5461 -0.7045 -0.0015 6 6 2.2594 -1.1081 -0.0009 7 6 1.7818 -2.5374 -0.0011 8 1 1.0809 -2.6862 0.8203 9 6 1.0838 -2.8417 -1.3285 10 6 0.6181 -4.3004 -1.3321 11 6 1.8261 -5.2140 -1.1071 12 6 2.5027 -4.8411 0.2139 13 7 2.9304 -3.4371 0.1669 14 6 3.7061 -3.0827 1.3630 15 6 2.8970 -3.3915 2.5962 16 8 1.7441 -3.7530 2.4903 17 7 3.4544 -3.2660 3.8168 18 6 2.7184 -3.5474 4.9388 19 1 1.6920 -3.8700 4.8445 20 6 3.2930 -3.4175 6.1973 21 7 4.5417 -3.0245 6.3121 22 14 2.2904 -3.8016 7.7259 23 1 0.9222 -4.2201 7.3283 24 1 2.9437 -4.8990 8.4835 25 1 2.2081 -2.5903 8.5811 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5143 29 1 1.9172 2.1324 -0.0037 30 1 4.4166 1.3436 -0.0011 31 1 4.4166 -1.3438 -0.0018 32 1 0.2222 -2.1844 -1.4455 33 1 1.7801 -2.6800 -2.1513 34 1 0.1588 -4.5337 -2.2926 35 1 -0.1078 -4.4530 -0.5334 36 1 2.5341 -5.0896 -1.9265 37 1 1.4948 -6.2517 -1.0660 38 1 3.3716 -5.4804 0.3701 39 1 1.7982 -4.9788 1.0342 40 1 4.6304 -3.6601 1.3808 41 1 3.9427 -2.0189 1.3406 42 1 4.3764 -2.9766 3.9016 43 1 4.9429 -2.9341 7.1906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175142744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:08 Heat of formation + Delta-G solvation = 10.082785 kcal Electronic energy + Delta-G solvation = -24590.623482 eV Core-core repulsion = 21250.197495 eV Total energy + Delta-G solvation = -3340.425987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41281 -40.73018 -38.78724 -36.00397 -34.69471 -33.46662 -33.28127 -32.65426 -29.06495 -28.61295 -27.21064 -26.49276 -24.05257 -23.89291 -21.60729 -21.07685 -20.71334 -20.13291 -19.70152 -18.16359 -17.48210 -16.59656 -16.41641 -16.30591 -16.00720 -15.74803 -15.63558 -15.32463 -14.99736 -14.40635 -14.17311 -14.05905 -13.96494 -13.52631 -13.45754 -13.23980 -13.04609 -12.95523 -12.91661 -12.75575 -12.44943 -12.23688 -12.15835 -12.00068 -11.61982 -11.40119 -11.32731 -11.24984 -10.90934 -10.00718 -9.38345 -9.01760 -8.74135 -8.47402 -5.97838 1.31877 1.37108 1.40778 1.51173 1.99157 2.11224 2.20681 2.26476 3.01223 3.18409 3.27323 3.74217 3.91499 4.01010 4.07783 4.23078 4.31941 4.36386 4.40423 4.42577 4.50233 4.60067 4.63295 4.73975 4.75186 4.81358 4.86938 4.88259 5.00454 5.09557 5.11506 5.23578 5.28063 5.37221 5.45584 5.48849 5.55983 5.89329 6.01833 6.11776 6.24880 6.44038 6.56834 6.60348 7.09481 7.53596 8.08119 8.68296 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014994 B = 0.005390 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.014242 B = 5193.345150 C = 6056.847529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.451 5.451 3 C -0.021 4.021 4 C -0.221 4.221 5 C -0.212 4.212 6 C 0.011 3.989 7 C 0.149 3.851 8 H 0.039 0.961 9 C -0.097 4.097 10 C -0.116 4.116 11 C -0.106 4.106 12 C 0.032 3.968 13 N -0.487 5.487 14 C 0.021 3.979 15 C 0.414 3.586 16 O -0.622 6.622 17 N -0.571 5.571 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.271 1.271 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.190 0.810 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.394 0.606 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 4.633 -15.385 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.127 5.127 3 C -0.151 4.151 4 C -0.245 4.245 5 C -0.236 4.236 6 C -0.101 4.101 7 C 0.040 3.960 8 H 0.057 0.943 9 C -0.135 4.135 10 C -0.154 4.154 11 C -0.144 4.144 12 C -0.095 4.095 13 N -0.210 5.210 14 C -0.110 4.110 15 C 0.202 3.798 16 O -0.510 6.510 17 N -0.207 5.207 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.196 1.196 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.207 0.793 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.227 0.773 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.450 4.480 -15.711 17.222 hybrid contribution -0.217 -0.171 2.054 2.072 sum -5.667 4.309 -13.657 15.401 Atomic orbital electron populations 1.22215 0.76288 1.04625 1.04330 1.44015 1.07000 1.05347 1.56340 1.22239 0.90367 0.92104 1.10372 1.21172 0.97029 0.94872 1.11426 1.20936 0.95739 0.95518 1.11455 1.20286 0.91109 0.88600 1.10149 1.19958 0.91833 0.86161 0.98082 0.94275 1.21564 0.99355 0.97118 0.95504 1.21560 0.97479 0.94275 1.02050 1.21533 0.97209 0.99321 0.96300 1.22409 0.99950 0.88132 0.99043 1.62359 1.21801 1.03149 1.33694 1.22767 0.96966 1.05654 0.85628 1.22057 0.88849 0.82835 0.86092 1.90365 1.20071 1.53865 1.86715 1.42119 1.14406 1.59140 1.05032 1.19671 0.97230 1.44261 0.85042 0.90525 1.26053 0.97160 0.96514 1.01584 1.69688 1.13240 1.46903 1.26189 0.84893 0.77925 0.78342 0.77292 1.19892 1.19417 1.19597 0.88775 0.91489 0.88020 0.79300 0.83471 0.84022 0.91105 0.90892 0.89324 0.93684 0.90460 0.90570 0.91471 0.93787 0.87869 0.85596 0.77252 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 9.81 127.77 1.25 2.64 16 2 N -0.45 -12.74 3.15 -533.23 -1.68 -14.42 16 3 C -0.02 -0.56 11.43 83.21 0.95 0.39 16 4 C -0.22 -6.37 10.86 22.14 0.24 -6.13 16 5 C -0.21 -6.96 8.15 22.14 0.18 -6.78 16 6 C 0.01 0.36 5.68 41.08 0.23 0.60 16 7 C 0.15 5.07 1.44 44.19 0.06 5.14 16 8 H 0.04 1.68 5.80 -2.39 -0.01 1.66 16 9 C -0.10 -2.59 5.29 30.65 0.16 -2.42 16 10 C -0.12 -2.87 6.00 30.67 0.18 -2.68 16 11 C -0.11 -2.75 6.09 30.64 0.19 -2.56 16 12 C 0.03 1.11 4.93 86.32 0.43 1.54 16 13 N -0.49 -16.91 4.43 -880.06 -3.90 -20.81 16 14 C 0.02 0.80 4.94 85.56 0.42 1.23 16 15 C 0.41 20.27 7.18 87.66 0.63 20.89 16 16 O -0.62 -33.64 11.24 -3.07 -0.03 -33.68 16 17 N -0.57 -30.40 5.29 -306.98 -1.62 -32.03 16 18 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 19 H 0.08 4.74 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -50.87 13.05 21.66 0.28 -50.59 16 22 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H 0.09 1.48 7.97 -2.39 -0.02 1.46 16 27 H 0.07 1.63 7.60 -2.39 -0.02 1.61 16 28 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.19 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.14 4.57 6.23 -2.91 -0.02 4.56 16 32 H 0.07 1.65 6.85 -2.39 -0.02 1.63 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 39 H 0.04 1.89 5.39 -2.39 -0.01 1.88 16 40 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 41 H 0.13 4.75 3.94 -2.39 -0.01 4.74 16 42 H 0.39 20.34 7.90 -92.71 -0.73 19.61 16 43 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -68.91 333.39 1.58 -67.34 By element: Atomic # 1 Polarization: 45.03 SS G_CDS: 0.29 Total: 45.31 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 6.21 Total: -6.89 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -6.92 Total: -117.85 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.03 Total: -33.68 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -68.91 1.58 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175142744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.420 kcal (2) G-P(sol) polarization free energy of solvation -68.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds