Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21289 * 119.99745 * 2 1 4 4 N 1.34777 * 120.00392 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00076 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47125 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47179 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47266 * 179.27887 * 7 6 5 9 9 C 1.46906 * 110.99857 * 287.83819 * 8 7 6 10 10 C 1.50703 * 109.47090 * 298.73234 * 9 8 7 11 11 H 1.08006 * 119.99557 * 4.70358 * 10 9 8 12 12 C 1.37873 * 119.99861 * 184.69591 * 10 9 8 13 13 N 1.31517 * 119.99721 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00114 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47088 * 89.99885 * 14 12 10 16 16 H 1.48504 * 109.46883 * 209.99632 * 14 12 10 17 17 H 1.48496 * 109.46934 * 329.99601 * 14 12 10 18 18 C 1.46897 * 111.00084 * 163.88133 * 8 7 6 19 19 C 1.50704 * 109.47057 * 189.99911 * 18 8 7 20 20 C 1.38229 * 119.61555 * 95.02693 * 19 18 8 21 21 C 1.38621 * 119.15988 * 179.97438 * 20 19 18 22 22 C 1.38668 * 118.42245 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.16504 * 0.02562 * 22 21 20 24 24 N 1.31852 * 119.62106 * 275.00140 * 19 18 8 25 25 H 1.08998 * 109.47434 * 269.99890 * 1 2 3 26 26 H 1.09000 * 109.47181 * 30.00253 * 1 2 3 27 27 H 1.09003 * 109.47046 * 150.00163 * 1 2 3 28 28 H 0.96996 * 119.99779 * 0.02562 * 4 2 1 29 29 H 1.08999 * 109.47351 * 60.00047 * 5 4 2 30 30 H 1.09009 * 109.47345 * 300.00153 * 5 4 2 31 31 H 1.09007 * 109.47200 * 59.99932 * 6 5 4 32 32 H 1.08997 * 109.47049 * 299.99824 * 6 5 4 33 33 H 1.09003 * 109.46530 * 59.28101 * 7 6 5 34 34 H 1.08998 * 109.47325 * 299.28092 * 7 6 5 35 35 H 1.08994 * 109.46962 * 58.73663 * 9 8 7 36 36 H 1.08998 * 109.46584 * 178.73744 * 9 8 7 37 37 H 0.96997 * 119.99711 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.47087 * 70.00418 * 18 8 7 39 39 H 1.08996 * 109.47314 * 310.00064 * 18 8 7 40 40 H 1.08006 * 120.41764 * 359.94728 * 20 19 18 41 41 H 1.08001 * 120.79188 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.42156 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.61994 * 180.27031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1560 -2.6095 0.0010 7 6 5.6860 -2.6094 0.0009 8 7 6.1758 -3.9943 0.0182 9 6 5.9552 -4.6143 1.3317 10 6 6.7147 -3.8471 2.3832 11 1 7.2404 -2.9419 2.1170 12 6 6.7383 -4.3006 3.6850 13 7 7.4007 -3.6308 4.6027 14 14 5.8295 -5.8664 4.1452 15 1 6.7372 -7.0307 3.9852 16 1 5.3791 -5.7803 5.5576 17 1 4.6499 -6.0328 3.2587 18 6 7.5934 -4.0561 -0.3618 19 6 7.9949 -5.4934 -0.5718 20 6 7.9689 -6.0309 -1.8451 21 6 8.3407 -7.3538 -2.0276 22 6 8.7269 -8.0899 -0.9177 23 6 8.7279 -7.4849 0.3246 24 7 8.3674 -6.2236 0.4609 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6960 -2.0072 0.0005 29 1 4.0089 -0.6530 0.8911 30 1 4.0096 -0.6534 -0.8889 31 1 3.7930 -3.1232 -0.8893 32 1 3.7924 -3.1235 0.8907 33 1 6.0493 -2.0845 0.8845 34 1 6.0493 -2.1067 -0.8954 35 1 4.8912 -4.5976 1.5672 36 1 6.3065 -5.6459 1.3099 37 1 7.4176 -3.9500 5.5185 38 1 8.2015 -3.6213 0.4314 39 1 7.7468 -3.4974 -1.2850 40 1 7.6625 -5.4278 -2.6871 41 1 8.3306 -7.8003 -3.0109 42 1 9.0224 -9.1234 -1.0227 43 1 9.0316 -8.0501 1.1934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178387513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = 1.284110 kcal Electronic energy + Delta-G solvation = -22994.598053 eV Core-core repulsion = 19653.790526 eV Total energy + Delta-G solvation = -3340.807526 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.84190 -39.46532 -37.21772 -35.05575 -32.39938 -32.36077 -31.90241 -30.84769 -29.33789 -27.71048 -25.79903 -23.76173 -23.08408 -22.38308 -21.11256 -20.52169 -19.36762 -17.04058 -16.65968 -16.39208 -16.10578 -15.78242 -15.70222 -15.15620 -14.91538 -14.49521 -14.21839 -13.82058 -13.40077 -13.18421 -12.99983 -12.82969 -12.65716 -12.44605 -12.28753 -11.87773 -11.76896 -11.43314 -11.26904 -11.04434 -10.93576 -10.63353 -10.39470 -10.28072 -9.83365 -9.81868 -9.53437 -9.42003 -8.97437 -8.82975 -8.65851 -8.46593 -7.25672 -6.00401 -3.97074 1.46493 1.65060 2.68098 3.30519 3.34197 3.40173 3.42802 4.14147 4.48931 4.70854 4.80867 4.94427 5.05947 5.09363 5.17436 5.26173 5.34258 5.35068 5.38026 5.47528 5.52870 5.65761 5.69842 5.86020 5.92149 5.99666 6.05443 6.11601 6.28271 6.37403 6.45839 6.47511 6.60552 6.67945 6.78380 6.95872 7.06275 7.21612 7.56015 7.62490 7.99623 8.03293 8.26921 8.51307 8.55570 8.99831 9.64185 11.13075 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.004389 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.497751 B = 6377.436192 C = 7811.999169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.552 6.552 4 N -0.727 5.727 5 C 0.118 3.882 6 C -0.120 4.120 7 C 0.061 3.939 8 N -0.530 5.530 9 C 0.152 3.848 10 C -0.532 4.532 11 H 0.073 0.927 12 C 0.078 3.922 13 N -0.902 5.902 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.291 1.291 17 H -0.270 1.270 18 C 0.102 3.898 19 C 0.156 3.844 20 C -0.164 4.164 21 C -0.085 4.085 22 C -0.188 4.188 23 C 0.096 3.904 24 N -0.449 5.449 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.400 0.600 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.022 0.978 36 H 0.036 0.964 37 H 0.261 0.739 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 -3.906 -13.496 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.292 3.708 3 O -0.430 6.430 4 N -0.379 5.379 5 C -0.005 4.005 6 C -0.158 4.158 7 C -0.068 4.068 8 N -0.253 5.253 9 C 0.025 3.975 10 C -0.570 4.570 11 H 0.091 0.909 12 C -0.124 4.124 13 N -0.541 5.541 14 Si 0.704 3.296 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.194 1.194 18 C -0.027 4.027 19 C 0.018 3.982 20 C -0.185 4.185 21 C -0.111 4.111 22 C -0.209 4.209 23 C -0.062 4.062 24 N -0.158 5.158 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.235 0.765 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.594 -3.024 -12.824 14.734 hybrid contribution -0.170 -1.434 0.262 1.468 sum -6.764 -4.458 -12.562 14.947 Atomic orbital electron populations 1.21876 0.92047 1.04577 1.04689 1.20784 0.90521 0.83638 0.75817 1.90723 1.70898 1.31495 1.49912 1.46144 1.08078 1.08587 1.75091 1.21384 0.78700 0.98145 1.02320 1.21677 0.97021 0.94212 1.02907 1.21833 0.93343 0.90612 1.01004 1.62472 1.14702 1.16528 1.31598 1.20262 0.96228 0.95929 0.85079 1.21452 1.32048 1.10690 0.92844 0.90935 1.24827 0.94715 0.96358 0.96496 1.69923 1.42315 1.39541 1.02272 0.86852 0.80662 0.84866 0.77218 1.20121 1.21770 1.19444 1.20876 0.91414 0.89806 1.00556 1.21271 0.92332 0.96460 0.88123 1.21937 1.01927 0.95994 0.98612 1.21450 0.96682 0.94182 0.98763 1.22049 1.03561 1.00986 0.94277 1.22827 0.95342 0.91494 0.96541 1.67780 1.08367 1.06038 1.33615 0.88946 0.89122 0.90314 0.76547 0.91171 0.91791 0.91587 0.90753 0.92150 0.92563 0.95965 0.94596 0.92942 0.91042 0.91184 0.85262 0.85591 0.85605 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.30 36.01 0.37 -1.03 16 2 C 0.51 6.63 7.94 -10.99 -0.09 6.55 16 3 O -0.55 -9.89 17.10 5.55 0.09 -9.79 16 4 N -0.73 -8.82 5.56 -60.29 -0.33 -9.15 16 5 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 6 C -0.12 -1.79 5.39 -26.73 -0.14 -1.94 16 7 C 0.06 1.06 4.81 -3.82 -0.02 1.04 16 8 N -0.53 -10.31 4.66 -237.51 -1.11 -11.42 16 9 C 0.15 3.55 3.77 -4.97 -0.02 3.53 16 10 C -0.53 -14.44 7.89 -34.44 -0.27 -14.71 16 11 H 0.07 2.14 6.20 -52.48 -0.33 1.81 16 12 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 13 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 14 Si 0.88 21.95 27.38 -169.99 -4.65 17.30 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 17 H -0.27 -6.50 6.68 56.52 0.38 -6.12 16 18 C 0.10 1.90 5.09 -4.98 -0.03 1.87 16 19 C 0.16 2.84 5.70 -82.58 -0.47 2.37 16 20 C -0.16 -2.40 9.72 -39.44 -0.38 -2.78 16 21 C -0.08 -1.08 10.18 -39.28 -0.40 -1.48 16 22 C -0.19 -2.50 10.11 -39.44 -0.40 -2.90 16 23 C 0.10 1.58 11.18 -17.55 -0.20 1.38 16 24 N -0.45 -9.05 8.78 -9.47 -0.08 -9.13 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.40 3.72 8.47 -40.82 -0.35 3.38 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.07 1.24 6.72 -51.93 -0.35 0.90 16 33 H 0.06 1.24 6.17 -51.93 -0.32 0.92 16 34 H 0.06 0.85 7.81 -51.93 -0.41 0.45 16 35 H 0.02 0.53 6.04 -51.93 -0.31 0.22 16 36 H 0.04 0.89 5.36 -51.93 -0.28 0.62 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 1.57 6.57 -51.93 -0.34 1.22 16 39 H 0.07 1.08 7.76 -51.93 -0.40 0.67 16 40 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -34.68 352.03 -8.64 -43.31 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.47 Total: 4.69 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -2.16 Total: -4.29 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.75 Total: -56.53 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.65 Total: 17.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.68 -8.64 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178387513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.598 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds