Wall clock time and date at job start Tue Mar 31 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21289 * 119.99745 * 2 1 4 4 N 1.34777 * 120.00392 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00076 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47125 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47179 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47266 * 179.27887 * 7 6 5 9 9 C 1.46906 * 110.99857 * 287.83819 * 8 7 6 10 10 C 1.50703 * 109.47090 * 298.73234 * 9 8 7 11 11 H 1.08006 * 119.99557 * 4.70358 * 10 9 8 12 12 C 1.37873 * 119.99861 * 184.69591 * 10 9 8 13 13 N 1.31517 * 119.99721 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00114 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47088 * 89.99885 * 14 12 10 16 16 H 1.48504 * 109.46883 * 209.99632 * 14 12 10 17 17 H 1.48496 * 109.46934 * 329.99601 * 14 12 10 18 18 C 1.46897 * 111.00084 * 163.88133 * 8 7 6 19 19 C 1.50704 * 109.47057 * 189.99911 * 18 8 7 20 20 C 1.38229 * 119.61555 * 95.02693 * 19 18 8 21 21 C 1.38621 * 119.15988 * 179.97438 * 20 19 18 22 22 C 1.38668 * 118.42245 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.16504 * 0.02562 * 22 21 20 24 24 N 1.31852 * 119.62106 * 275.00140 * 19 18 8 25 25 H 1.08998 * 109.47434 * 269.99890 * 1 2 3 26 26 H 1.09000 * 109.47181 * 30.00253 * 1 2 3 27 27 H 1.09003 * 109.47046 * 150.00163 * 1 2 3 28 28 H 0.96996 * 119.99779 * 0.02562 * 4 2 1 29 29 H 1.08999 * 109.47351 * 60.00047 * 5 4 2 30 30 H 1.09009 * 109.47345 * 300.00153 * 5 4 2 31 31 H 1.09007 * 109.47200 * 59.99932 * 6 5 4 32 32 H 1.08997 * 109.47049 * 299.99824 * 6 5 4 33 33 H 1.09003 * 109.46530 * 59.28101 * 7 6 5 34 34 H 1.08998 * 109.47325 * 299.28092 * 7 6 5 35 35 H 1.08994 * 109.46962 * 58.73663 * 9 8 7 36 36 H 1.08998 * 109.46584 * 178.73744 * 9 8 7 37 37 H 0.96997 * 119.99711 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.47087 * 70.00418 * 18 8 7 39 39 H 1.08996 * 109.47314 * 310.00064 * 18 8 7 40 40 H 1.08006 * 120.41764 * 359.94728 * 20 19 18 41 41 H 1.08001 * 120.79188 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.42156 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.61994 * 180.27031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1560 -2.6095 0.0010 7 6 5.6860 -2.6094 0.0009 8 7 6.1758 -3.9943 0.0182 9 6 5.9552 -4.6143 1.3317 10 6 6.7147 -3.8471 2.3832 11 1 7.2404 -2.9419 2.1170 12 6 6.7383 -4.3006 3.6850 13 7 7.4007 -3.6308 4.6027 14 14 5.8295 -5.8664 4.1452 15 1 6.7372 -7.0307 3.9852 16 1 5.3791 -5.7803 5.5576 17 1 4.6499 -6.0328 3.2587 18 6 7.5934 -4.0561 -0.3618 19 6 7.9949 -5.4934 -0.5718 20 6 7.9689 -6.0309 -1.8451 21 6 8.3407 -7.3538 -2.0276 22 6 8.7269 -8.0899 -0.9177 23 6 8.7279 -7.4849 0.3246 24 7 8.3674 -6.2236 0.4609 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6960 -2.0072 0.0005 29 1 4.0089 -0.6530 0.8911 30 1 4.0096 -0.6534 -0.8889 31 1 3.7930 -3.1232 -0.8893 32 1 3.7924 -3.1235 0.8907 33 1 6.0493 -2.0845 0.8845 34 1 6.0493 -2.1067 -0.8954 35 1 4.8912 -4.5976 1.5672 36 1 6.3065 -5.6459 1.3099 37 1 7.4176 -3.9500 5.5185 38 1 8.2015 -3.6213 0.4314 39 1 7.7468 -3.4974 -1.2850 40 1 7.6625 -5.4278 -2.6871 41 1 8.3306 -7.8003 -3.0109 42 1 9.0224 -9.1234 -1.0227 43 1 9.0316 -8.0501 1.1934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178387513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:53 Heat of formation + Delta-G solvation = -25.510845 kcal Electronic energy + Delta-G solvation = -22995.759969 eV Core-core repulsion = 19653.790526 eV Total energy + Delta-G solvation = -3341.969443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06541 -40.56697 -38.74530 -36.30070 -34.52312 -33.54233 -33.08187 -32.09645 -30.38858 -29.47315 -27.11572 -25.44363 -24.23463 -23.81328 -22.34315 -21.69275 -20.98474 -19.02900 -17.75091 -17.56769 -17.27874 -17.02374 -16.94358 -16.48554 -16.25794 -16.07809 -15.86157 -15.24679 -14.59783 -14.48282 -14.38825 -14.20393 -13.94631 -13.53034 -13.37093 -13.17325 -13.08333 -12.87804 -12.82743 -12.65081 -12.34998 -12.28379 -12.05422 -11.96212 -11.63641 -11.46774 -10.96521 -10.73410 -10.62066 -10.10578 -10.06282 -9.83898 -8.98213 -8.24230 -6.23513 0.30666 0.55667 1.31387 1.34549 1.42721 1.65975 2.30237 2.36894 2.90833 3.14024 3.40860 3.68046 3.93245 3.95205 4.07234 4.12094 4.19851 4.31928 4.35971 4.39872 4.54084 4.59339 4.62297 4.69618 4.76142 4.78618 4.91831 4.94162 5.05861 5.07674 5.14259 5.16762 5.26662 5.34367 5.37066 5.41494 5.47978 5.60454 5.95359 6.10412 6.35794 6.40680 6.61135 6.78716 7.28751 7.35045 7.40764 8.92893 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012975 B = 0.004389 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.497751 B = 6377.436192 C = 7811.999169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.498 3.502 3 O -0.609 6.609 4 N -0.718 5.718 5 C 0.127 3.873 6 C -0.103 4.103 7 C 0.059 3.941 8 N -0.516 5.516 9 C 0.166 3.834 10 C -0.516 4.516 11 H 0.033 0.967 12 C 0.015 3.985 13 N -0.953 5.953 14 Si 0.938 3.062 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.250 1.250 18 C 0.104 3.896 19 C 0.123 3.877 20 C -0.157 4.157 21 C -0.076 4.076 22 C -0.172 4.172 23 C 0.068 3.932 24 N -0.508 5.508 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.417 0.583 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.018 0.982 34 H 0.084 0.916 35 H 0.024 0.976 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.022 0.978 39 H 0.104 0.896 40 H 0.157 0.843 41 H 0.171 0.829 42 H 0.164 0.836 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 -6.587 -16.709 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.287 3.713 3 O -0.491 6.491 4 N -0.370 5.370 5 C 0.002 3.998 6 C -0.141 4.141 7 C -0.070 4.070 8 N -0.239 5.239 9 C 0.038 3.962 10 C -0.555 4.555 11 H 0.051 0.949 12 C -0.181 4.181 13 N -0.594 5.594 14 Si 0.764 3.236 15 H -0.199 1.199 16 H -0.214 1.214 17 H -0.173 1.173 18 C -0.024 4.024 19 C -0.015 4.015 20 C -0.177 4.177 21 C -0.102 4.102 22 C -0.191 4.191 23 C -0.090 4.090 24 N -0.218 5.218 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.130 0.870 28 H 0.255 0.745 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.103 0.897 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.041 0.959 39 H 0.122 0.878 40 H 0.175 0.825 41 H 0.189 0.811 42 H 0.182 0.818 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.705 -5.742 -16.065 19.153 hybrid contribution 0.584 -0.576 1.162 1.422 sum -8.121 -6.318 -14.904 18.110 Atomic orbital electron populations 1.21890 0.87633 1.06446 1.06095 1.21759 0.92600 0.82699 0.74220 1.90701 1.72430 1.33434 1.52500 1.46065 1.07078 1.09510 1.74348 1.21123 0.80352 0.97341 1.01025 1.21502 0.94878 0.94529 1.03235 1.21918 0.95262 0.89373 1.00404 1.62496 1.15549 1.17204 1.28623 1.19984 0.95209 0.95166 0.85801 1.21676 1.30752 1.09240 0.93829 0.94911 1.25689 0.95987 0.99829 0.96632 1.70080 1.44876 1.41794 1.02697 0.85843 0.79991 0.80595 0.77213 1.19914 1.21440 1.17337 1.20910 0.89754 0.91465 1.00280 1.21216 0.94709 0.95964 0.89600 1.22185 1.00753 0.97229 0.97548 1.21973 0.94551 0.93193 1.00494 1.22420 1.01270 1.02542 0.92916 1.23076 0.96498 0.90804 0.98575 1.67593 1.10417 1.08069 1.35744 0.87570 0.88686 0.87038 0.74545 0.94349 0.91398 0.88816 0.92549 0.96397 0.89725 0.95822 0.95276 0.93064 0.95944 0.87751 0.82530 0.81125 0.81842 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 10.30 71.24 0.73 -1.45 16 2 C 0.50 12.55 7.94 87.66 0.70 13.25 16 3 O -0.61 -22.11 17.10 -3.06 -0.05 -22.16 16 4 N -0.72 -16.43 5.56 -463.05 -2.57 -19.00 16 5 C 0.13 3.61 5.67 86.38 0.49 4.10 16 6 C -0.10 -3.00 5.39 30.59 0.16 -2.83 16 7 C 0.06 2.09 4.81 86.30 0.41 2.50 16 8 N -0.52 -20.11 4.66 -905.36 -4.22 -24.32 16 9 C 0.17 7.89 3.77 85.56 0.32 8.21 16 10 C -0.52 -29.55 7.89 25.60 0.20 -29.35 16 11 H 0.03 2.10 6.20 -2.91 -0.02 2.08 16 12 C 0.02 0.92 5.47 84.65 0.46 1.38 16 13 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 14 Si 0.94 46.27 27.38 68.60 1.88 48.15 16 15 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 17 H -0.25 -11.38 6.68 99.48 0.66 -10.72 16 18 C 0.10 3.95 5.09 85.56 0.44 4.39 16 19 C 0.12 4.40 5.70 42.55 0.24 4.64 16 20 C -0.16 -4.08 9.72 22.36 0.22 -3.86 16 21 C -0.08 -1.60 10.18 22.46 0.23 -1.37 16 22 C -0.17 -3.95 10.11 22.36 0.23 -3.73 16 23 C 0.07 2.18 11.18 84.67 0.95 3.12 16 24 N -0.51 -20.78 8.78 -183.88 -1.61 -22.39 16 25 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.42 6.68 8.47 -92.71 -0.79 5.89 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.06 1.85 6.72 -2.39 -0.02 1.84 16 33 H 0.02 0.78 6.17 -2.39 -0.01 0.77 16 34 H 0.08 2.50 7.81 -2.39 -0.02 2.48 16 35 H 0.02 1.13 6.04 -2.39 -0.01 1.11 16 36 H 0.03 1.46 5.36 -2.39 -0.01 1.44 16 37 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.02 1.06 6.57 -2.39 -0.02 1.04 16 39 H 0.10 3.11 7.76 -2.39 -0.02 3.09 16 40 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -82.61 352.03 -0.31 -82.92 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.18 Total: 18.91 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 5.78 Total: -0.99 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -8.10 Total: -126.83 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.05 Total: -22.16 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.15 kcal Total: -82.61 -0.31 -82.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178387513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.412 kcal (2) G-P(sol) polarization free energy of solvation -82.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds