Wall clock time and date at job start Tue Mar 31 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47149 * 2 1 4 4 C 1.46494 * 120.00365 * 269.99983 * 3 2 1 5 5 C 1.50698 * 109.47581 * 270.00241 * 4 3 2 6 6 H 1.08007 * 119.99483 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00738 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99694 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00455 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47261 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47134 * 119.99843 * 9 7 5 12 12 H 1.48504 * 109.47304 * 239.99932 * 9 7 5 13 13 C 1.34782 * 119.99907 * 90.00089 * 3 2 1 14 14 O 1.21282 * 119.99942 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99888 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47124 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99927 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47033 * 324.99876 * 17 16 15 19 19 C 1.52993 * 109.47378 * 85.00135 * 17 16 15 20 20 C 1.50701 * 109.46922 * 205.00055 * 17 16 15 21 21 C 1.38675 * 120.41875 * 139.71979 * 20 17 16 22 22 C 1.38629 * 118.42011 * 179.77944 * 21 20 17 23 23 C 1.38228 * 119.15860 * 0.51689 * 22 21 20 24 24 N 1.31853 * 120.76618 * 359.72344 * 23 22 21 25 25 C 1.31883 * 121.72223 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47014 * 300.00061 * 1 2 3 28 28 H 1.08996 * 109.46642 * 59.99639 * 1 2 3 29 29 H 1.09002 * 109.46992 * 240.00402 * 2 1 3 30 30 H 1.09002 * 109.47256 * 120.00058 * 2 1 3 31 31 H 1.08998 * 109.47092 * 30.00268 * 4 3 2 32 32 H 1.09002 * 109.47259 * 150.00073 * 4 3 2 33 33 H 0.96997 * 119.99896 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47540 * 59.99450 * 15 13 3 35 35 H 1.09003 * 109.46979 * 299.99975 * 15 13 3 36 36 H 1.00900 * 110.99890 * 303.95123 * 16 15 13 37 37 H 1.08992 * 109.47715 * 179.97438 * 19 17 16 38 38 H 1.09004 * 109.46862 * 299.99897 * 19 17 16 39 39 H 1.09004 * 109.46998 * 59.99419 * 19 17 16 40 40 H 1.07998 * 120.79062 * 0.02562 * 21 20 17 41 41 H 1.08000 * 120.41594 * 180.21514 * 22 21 20 42 42 H 1.07996 * 119.61500 * 179.74454 * 23 22 21 43 43 H 1.08009 * 119.61320 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1259 -3.6180 9 14 5.9135 2.0968 -3.4168 10 1 6.6012 1.2415 -2.4164 11 1 5.9214 1.4173 -4.7372 12 1 6.6205 3.3982 -3.5257 13 6 2.2430 2.0166 1.1673 14 8 2.6477 3.1599 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3111 2.2057 3.5889 17 6 2.0776 1.5454 4.8802 18 1 1.2172 0.8812 4.7984 19 6 3.3143 0.7326 5.2684 20 6 1.8095 2.5870 5.9358 21 6 0.8317 2.3775 6.8966 22 6 0.6229 3.3612 7.8509 23 6 1.3834 4.5146 7.8067 24 7 2.3013 4.6820 6.8751 25 6 2.5305 3.7656 5.9548 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5818 1.6878 -2.0283 32 1 2.0956 3.1411 -1.1383 33 1 3.6750 3.5158 -4.4442 34 1 2.6228 0.4186 2.5298 35 1 0.9445 1.0114 2.5302 36 1 3.2594 2.5438 3.5215 37 1 3.1413 0.2430 6.2267 38 1 3.5082 -0.0209 4.5049 39 1 4.1747 1.3968 5.3502 40 1 0.2496 1.4679 6.9038 41 1 -0.1278 3.2300 8.6161 42 1 1.2240 5.2875 8.5440 43 1 3.2912 3.9380 5.2077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181631525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:28 Heat of formation + Delta-G solvation = 0.315831 kcal Electronic energy + Delta-G solvation = -22973.924942 eV Core-core repulsion = 19633.075428 eV Total energy + Delta-G solvation = -3340.849514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38022 -39.12703 -36.83971 -35.22241 -32.93911 -32.61292 -31.67227 -30.09628 -29.46716 -27.61121 -25.67887 -24.18366 -23.55745 -23.01399 -22.19362 -21.00513 -18.49769 -17.30416 -16.68190 -16.47935 -16.36609 -15.69202 -15.36970 -15.14695 -14.48977 -14.33280 -14.04055 -13.93131 -13.58507 -13.34428 -13.17940 -13.04759 -12.92515 -12.55575 -12.40225 -12.01387 -11.88928 -11.59893 -11.50469 -11.37912 -11.17994 -10.89048 -10.74344 -10.54015 -10.12659 -9.91942 -9.61093 -9.51325 -9.07092 -8.92774 -8.43233 -8.36382 -7.64169 -6.03732 -4.08507 1.02860 1.18162 3.29593 3.36874 3.39684 3.46195 3.62742 3.79443 4.25341 4.35961 4.45946 4.66726 4.68962 4.80903 4.89571 4.98720 5.08743 5.12506 5.24681 5.30934 5.33268 5.42914 5.43689 5.49137 5.62395 5.66861 5.70807 5.80568 5.87485 5.96774 6.01157 6.16596 6.22513 6.47516 6.59208 6.83148 7.12334 7.33111 7.47560 7.57033 7.92456 7.93114 8.24526 8.44797 8.91548 9.12977 9.56725 11.04346 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020591 B = 0.003357 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.504813 B = 8339.829942 C = 8904.785495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.527 6.527 15 C 0.042 3.958 16 N -0.666 5.666 17 C 0.127 3.873 18 H 0.088 0.912 19 C -0.180 4.180 20 C -0.115 4.115 21 C -0.074 4.074 22 C -0.176 4.176 23 C 0.089 3.911 24 N -0.485 5.485 25 C 0.123 3.877 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.354 0.646 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.152 0.848 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 -8.024 20.307 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.090 4.090 16 N -0.299 5.299 17 C 0.016 3.984 18 H 0.107 0.893 19 C -0.239 4.239 20 C -0.118 4.118 21 C -0.100 4.100 22 C -0.196 4.196 23 C -0.068 4.068 24 N -0.193 5.193 25 C -0.034 4.034 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.174 0.826 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.294 -6.206 20.075 21.935 hybrid contribution 1.072 -1.644 -0.409 2.005 sum -5.223 -7.850 19.665 21.809 Atomic orbital electron populations 1.22226 0.96829 1.01323 1.02408 1.21401 0.93494 0.84329 1.02523 1.48249 1.64046 1.13170 1.07710 1.19253 0.96177 0.93689 0.78100 1.21465 0.96943 1.31803 1.06183 0.92522 1.24941 0.97824 0.94951 0.96443 1.69946 1.35585 1.33479 1.14311 0.86450 0.84684 0.78045 0.78265 1.19875 1.21008 1.20857 1.20154 0.78984 0.87091 0.84851 1.90685 1.45067 1.17688 1.86908 1.21932 1.02227 0.94425 0.90439 1.60214 1.32930 1.37277 0.99443 1.20380 0.98272 0.92072 0.87655 0.89342 1.22520 0.98397 1.00781 1.02223 1.20778 0.97094 0.97287 0.96643 1.21416 0.95972 0.99035 0.93620 1.22068 1.01660 0.95503 1.00367 1.22752 0.91659 0.96264 0.96082 1.67733 1.17209 1.31198 1.03191 1.22615 0.97536 0.88533 0.94748 0.92247 0.93052 0.91999 0.89990 0.91962 0.95090 0.93881 0.92781 0.92738 0.88750 0.82554 0.91839 0.91844 0.91892 0.85098 0.85033 0.83098 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.39 2.46 -175.06 -0.43 -12.82 16 4 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 5 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.50 10.24 7.71 -10.98 -0.08 10.16 16 14 O -0.53 -13.22 15.78 5.56 0.09 -13.13 16 15 C 0.04 0.59 4.52 -4.98 -0.02 0.57 16 16 N -0.67 -9.09 5.34 -109.22 -0.58 -9.67 16 17 C 0.13 1.30 2.81 -68.86 -0.19 1.10 16 18 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 19 C -0.18 -1.57 9.14 37.15 0.34 -1.23 16 20 C -0.12 -1.27 4.97 -104.48 -0.52 -1.79 16 21 C -0.07 -0.68 9.82 -39.28 -0.39 -1.07 16 22 C -0.18 -1.54 10.11 -39.44 -0.40 -1.94 16 23 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 24 N -0.49 -6.43 10.36 -13.25 -0.14 -6.56 16 25 C 0.12 1.57 10.49 -17.55 -0.18 1.39 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.64 7.22 -51.93 -0.38 0.26 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 30 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 34 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 35 H 0.09 1.17 7.10 -51.93 -0.37 0.80 16 36 H 0.35 5.10 7.55 -39.29 -0.30 4.81 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 39 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.16 1.98 7.27 -52.48 -0.38 1.60 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -34.34 358.84 -8.29 -42.64 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.62 Total: 2.62 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.74 Total: 0.61 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.41 Total: -54.98 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.34 -8.29 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181631525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.951 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds