Wall clock time and date at job start Tue Mar 31 2020 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47149 * 2 1 4 4 C 1.46494 * 120.00365 * 269.99983 * 3 2 1 5 5 C 1.50698 * 109.47581 * 270.00241 * 4 3 2 6 6 H 1.08007 * 119.99483 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00738 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99694 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00455 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47261 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47134 * 119.99843 * 9 7 5 12 12 H 1.48504 * 109.47304 * 239.99932 * 9 7 5 13 13 C 1.34782 * 119.99907 * 90.00089 * 3 2 1 14 14 O 1.21282 * 119.99942 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99888 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47124 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99927 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47033 * 324.99876 * 17 16 15 19 19 C 1.52993 * 109.47378 * 85.00135 * 17 16 15 20 20 C 1.50701 * 109.46922 * 205.00055 * 17 16 15 21 21 C 1.38675 * 120.41875 * 139.71979 * 20 17 16 22 22 C 1.38629 * 118.42011 * 179.77944 * 21 20 17 23 23 C 1.38228 * 119.15860 * 0.51689 * 22 21 20 24 24 N 1.31853 * 120.76618 * 359.72344 * 23 22 21 25 25 C 1.31883 * 121.72223 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.46954 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47014 * 300.00061 * 1 2 3 28 28 H 1.08996 * 109.46642 * 59.99639 * 1 2 3 29 29 H 1.09002 * 109.46992 * 240.00402 * 2 1 3 30 30 H 1.09002 * 109.47256 * 120.00058 * 2 1 3 31 31 H 1.08998 * 109.47092 * 30.00268 * 4 3 2 32 32 H 1.09002 * 109.47259 * 150.00073 * 4 3 2 33 33 H 0.96997 * 119.99896 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47540 * 59.99450 * 15 13 3 35 35 H 1.09003 * 109.46979 * 299.99975 * 15 13 3 36 36 H 1.00900 * 110.99890 * 303.95123 * 16 15 13 37 37 H 1.08992 * 109.47715 * 179.97438 * 19 17 16 38 38 H 1.09004 * 109.46862 * 299.99897 * 19 17 16 39 39 H 1.09004 * 109.46998 * 59.99419 * 19 17 16 40 40 H 1.07998 * 120.79062 * 0.02562 * 21 20 17 41 41 H 1.08000 * 120.41594 * 180.21514 * 22 21 20 42 42 H 1.07996 * 119.61500 * 179.74454 * 23 22 21 43 43 H 1.08009 * 119.61320 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1492 2.3897 -2.8779 8 7 3.3492 3.1259 -3.6180 9 14 5.9135 2.0968 -3.4168 10 1 6.6012 1.2415 -2.4164 11 1 5.9214 1.4173 -4.7372 12 1 6.6205 3.3982 -3.5257 13 6 2.2430 2.0166 1.1673 14 8 2.6477 3.1599 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3111 2.2057 3.5889 17 6 2.0776 1.5454 4.8802 18 1 1.2172 0.8812 4.7984 19 6 3.3143 0.7326 5.2684 20 6 1.8095 2.5870 5.9358 21 6 0.8317 2.3775 6.8966 22 6 0.6229 3.3612 7.8509 23 6 1.3834 4.5146 7.8067 24 7 2.3013 4.6820 6.8751 25 6 2.5305 3.7656 5.9548 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5818 1.6878 -2.0283 32 1 2.0956 3.1411 -1.1383 33 1 3.6750 3.5158 -4.4442 34 1 2.6228 0.4186 2.5298 35 1 0.9445 1.0114 2.5302 36 1 3.2594 2.5438 3.5215 37 1 3.1413 0.2430 6.2267 38 1 3.5082 -0.0209 4.5049 39 1 4.1747 1.3968 5.3502 40 1 0.2496 1.4679 6.9038 41 1 -0.1278 3.2300 8.6161 42 1 1.2240 5.2875 8.5440 43 1 3.2912 3.9380 5.2077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181631525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:27 Heat of formation + Delta-G solvation = -23.717818 kcal Electronic energy + Delta-G solvation = -22974.967119 eV Core-core repulsion = 19633.075428 eV Total energy + Delta-G solvation = -3341.891691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20777 -40.63684 -37.83537 -36.84419 -34.92223 -33.59758 -32.56704 -31.57192 -30.34256 -29.25435 -27.07941 -25.09337 -24.70081 -24.31273 -23.65718 -21.80097 -19.98557 -18.63810 -18.21813 -17.81179 -17.45996 -17.04416 -16.72601 -16.35865 -15.96670 -15.29151 -15.18615 -14.88832 -14.76449 -14.62449 -14.28036 -14.21976 -13.88170 -13.72628 -13.55931 -13.38997 -13.24819 -13.05699 -12.86487 -12.68142 -12.46597 -12.35140 -12.17564 -12.13133 -11.85366 -11.67984 -10.67913 -10.65249 -10.57661 -10.30503 -9.85638 -9.41548 -9.35273 -8.22216 -6.37294 0.25324 0.43469 1.35600 1.38408 1.49840 1.89261 2.26096 2.42217 2.91125 3.07139 3.23586 3.57119 3.73686 3.88809 4.00591 4.11416 4.13367 4.18154 4.29716 4.37752 4.39315 4.44129 4.50739 4.67299 4.69048 4.76451 4.91433 4.95148 4.97614 5.01533 5.07167 5.21208 5.23111 5.25800 5.39279 5.42302 5.59058 5.82040 5.87804 6.01081 6.07381 6.26529 6.71705 6.85892 7.12395 7.29384 7.55004 8.84993 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020591 B = 0.003357 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.504813 B = 8339.829942 C = 8904.785495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.589 6.589 15 C 0.061 3.939 16 N -0.687 5.687 17 C 0.133 3.867 18 H 0.113 0.887 19 C -0.175 4.175 20 C -0.122 4.122 21 C -0.073 4.073 22 C -0.167 4.167 23 C 0.073 3.927 24 N -0.523 5.523 25 C 0.094 3.906 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.020 0.980 32 H -0.008 1.008 33 H 0.266 0.734 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.344 0.656 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.173 0.827 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 -11.132 22.436 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.280 3.720 14 O -0.469 6.469 15 C -0.071 4.071 16 N -0.319 5.319 17 C 0.023 3.977 18 H 0.131 0.869 19 C -0.233 4.233 20 C -0.125 4.125 21 C -0.100 4.100 22 C -0.186 4.186 23 C -0.084 4.084 24 N -0.232 5.232 25 C -0.063 4.063 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.038 0.962 32 H 0.010 0.990 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.183 0.817 41 H 0.185 0.815 42 H 0.190 0.810 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.121 -9.377 22.224 25.151 hybrid contribution 1.244 -0.638 -1.006 1.723 sum -5.877 -10.015 21.218 24.188 Atomic orbital electron populations 1.22159 0.94693 1.03490 1.01600 1.21758 0.95225 0.81269 1.03994 1.48282 1.64139 1.15136 1.06121 1.18653 0.95239 0.91363 0.80605 1.21745 0.97857 1.31816 1.06403 0.92732 1.25893 1.02452 0.94514 0.96523 1.70071 1.37766 1.34340 1.14821 0.85346 0.78940 0.77950 0.78424 1.18928 1.19429 1.20941 1.21354 0.77353 0.86662 0.86616 1.90651 1.47691 1.20622 1.87938 1.21839 1.04363 0.94169 0.86701 1.60190 1.32526 1.38295 1.00851 1.20465 0.99722 0.91972 0.85555 0.86937 1.22460 0.97186 1.00399 1.03290 1.20898 0.97375 0.96708 0.97495 1.21839 0.95197 1.00261 0.92667 1.22464 1.01285 0.94297 1.00601 1.23240 0.91401 0.97852 0.95903 1.67650 1.18956 1.32206 1.04353 1.22516 0.98553 0.89991 0.95203 0.88486 0.92038 0.94673 0.91146 0.87824 0.96238 0.98989 0.92472 0.89764 0.85938 0.83671 0.90138 0.91186 0.93240 0.81749 0.81511 0.81034 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.06 16 2 C 0.10 2.88 5.93 86.38 0.51 3.40 16 3 N -0.60 -25.32 2.46 -826.16 -2.03 -27.35 16 4 C 0.26 14.42 5.16 85.63 0.44 14.86 16 5 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 7 C 0.00 0.28 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 9 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 C 0.49 20.20 7.71 87.66 0.68 20.88 16 14 O -0.59 -31.10 15.78 -3.04 -0.05 -31.15 16 15 C 0.06 1.58 4.52 85.56 0.39 1.97 16 16 N -0.69 -18.13 5.34 -499.47 -2.67 -20.80 16 17 C 0.13 2.37 2.81 44.17 0.12 2.50 16 18 H 0.11 1.48 7.69 -2.39 -0.02 1.47 16 19 C -0.17 -2.61 9.14 71.98 0.66 -1.95 16 20 C -0.12 -2.50 4.97 -19.77 -0.10 -2.59 16 21 C -0.07 -1.11 9.82 22.47 0.22 -0.89 16 22 C -0.17 -2.42 10.11 22.36 0.23 -2.19 16 23 C 0.07 1.43 11.18 84.69 0.95 2.38 16 24 N -0.52 -14.18 10.36 -195.84 -2.03 -16.21 16 25 C 0.09 2.48 10.49 84.67 0.89 3.37 16 26 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 30 H 0.10 2.15 6.44 -2.39 -0.02 2.14 16 31 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 32 H -0.01 -0.52 7.42 -2.39 -0.02 -0.53 16 33 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.08 1.72 6.70 -2.39 -0.02 1.70 16 35 H 0.12 2.52 7.10 -2.39 -0.02 2.51 16 36 H 0.34 10.23 7.55 -89.69 -0.68 9.55 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.96 7.45 -2.38 -0.02 0.94 16 39 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 40 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.14 3.87 7.27 -2.91 -0.02 3.85 16 Total: -1.00 -81.04 358.84 2.28 -78.76 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.32 Total: 18.06 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 6.42 Total: 8.25 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -6.44 Total: -121.32 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.05 Total: -31.15 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -81.04 2.28 -78.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181631525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.038 kcal (2) G-P(sol) polarization free energy of solvation -81.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds