Wall clock time and date at job start Tue Mar 31 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46899 * 2 1 4 4 C 1.46498 * 120.00121 * 269.99509 * 3 2 1 5 5 C 1.50694 * 109.47382 * 270.00329 * 4 3 2 6 6 H 1.07999 * 119.99920 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00347 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99659 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00356 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46786 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46729 * 120.00454 * 9 7 5 12 12 H 1.48492 * 109.47287 * 240.00524 * 9 7 5 13 13 C 1.34776 * 119.99674 * 89.99966 * 3 2 1 14 14 O 1.21287 * 119.99786 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00437 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.46890 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99538 * 179.97438 * 16 15 13 18 18 H 1.08994 * 109.47530 * 325.00132 * 17 16 15 19 19 C 1.53002 * 109.47098 * 85.00181 * 17 16 15 20 20 C 1.50703 * 109.47307 * 204.99940 * 17 16 15 21 21 C 1.38225 * 119.61869 * 154.99985 * 20 17 16 22 22 C 1.38635 * 119.15939 * 179.97438 * 21 20 17 23 23 C 1.38675 * 118.41956 * 0.02562 * 22 21 20 24 24 C 1.38186 * 119.16332 * 0.27967 * 23 22 21 25 25 N 1.31860 * 119.61591 * 334.98341 * 20 17 16 26 26 H 1.09005 * 109.46673 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47782 * 300.00024 * 1 2 3 28 28 H 1.09007 * 109.46838 * 60.00521 * 1 2 3 29 29 H 1.08998 * 109.47314 * 240.00230 * 2 1 3 30 30 H 1.09001 * 109.47234 * 119.99333 * 2 1 3 31 31 H 1.09008 * 109.46535 * 30.00289 * 4 3 2 32 32 H 1.08997 * 109.47316 * 150.00112 * 4 3 2 33 33 H 0.97003 * 119.99945 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47077 * 60.00383 * 15 13 3 35 35 H 1.08997 * 109.46946 * 300.00054 * 15 13 3 36 36 H 1.00898 * 111.00005 * 56.05116 * 16 15 13 37 37 H 1.09000 * 109.47390 * 179.97438 * 19 17 16 38 38 H 1.08995 * 109.46892 * 299.99621 * 19 17 16 39 39 H 1.09000 * 109.47392 * 59.99739 * 19 17 16 40 40 H 1.07997 * 120.42090 * 359.96022 * 21 20 17 41 41 H 1.07998 * 120.78847 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.41399 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.61418 * 179.70216 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1492 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6180 9 14 5.9136 2.0968 -3.4167 10 1 6.6012 1.2416 -2.4161 11 1 5.9215 1.4173 -4.7371 12 1 6.6205 3.3981 -3.5254 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1673 15 6 1.9912 1.3064 2.4723 16 7 2.3089 2.2066 3.5888 17 6 2.0743 1.5467 4.8802 18 1 1.2141 0.8825 4.7979 19 6 3.3108 0.7341 5.2696 20 6 1.8053 2.5886 5.9352 21 6 1.0709 2.2515 7.0567 22 6 0.8295 3.2173 8.0215 23 6 1.3377 4.4919 7.8211 24 6 2.0577 4.7568 6.6718 25 7 2.2735 3.8113 5.7780 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.5817 1.6877 -2.0284 32 1 2.0955 3.1411 -1.1384 33 1 3.6752 3.5163 -4.4439 34 1 2.6211 0.4187 2.5303 35 1 0.9431 1.0126 2.5299 36 1 1.7838 3.0655 3.5214 37 1 3.1370 0.2448 6.2280 38 1 3.5053 -0.0195 4.5066 39 1 4.1711 1.3983 5.3520 40 1 0.6897 1.2485 7.1796 41 1 0.2592 2.9825 8.9081 42 1 1.1686 5.2691 8.5518 43 1 2.4526 5.7482 6.5060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181780249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:20 Heat of formation + Delta-G solvation = 5.830595 kcal Electronic energy + Delta-G solvation = -22976.130733 eV Core-core repulsion = 19635.520357 eV Total energy + Delta-G solvation = -3340.610376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47745 -39.00985 -36.43943 -35.12316 -32.80195 -32.57598 -31.96933 -30.04531 -29.54457 -27.61707 -25.74408 -24.05189 -23.54682 -22.95447 -22.12893 -20.71464 -18.42842 -17.26764 -16.73010 -16.33770 -16.15581 -15.82815 -15.41262 -15.15069 -14.50492 -14.36754 -14.22020 -13.90106 -13.45057 -13.31676 -13.10987 -12.86879 -12.65226 -12.36800 -12.10603 -11.96103 -11.85553 -11.65804 -11.48880 -11.13788 -11.09399 -10.83503 -10.66331 -10.47253 -10.06674 -10.05784 -9.53924 -9.48944 -9.19990 -8.76773 -8.37246 -8.19397 -7.56326 -5.97823 -4.01829 0.89333 1.10573 3.34813 3.42312 3.46124 3.55370 3.62086 3.80119 4.04884 4.32276 4.51708 4.62323 4.65022 4.86560 4.97041 5.07508 5.13703 5.27676 5.33218 5.36810 5.37964 5.49742 5.50477 5.61992 5.67352 5.72009 5.81855 5.83543 5.89499 5.95244 6.05753 6.24543 6.26864 6.49900 6.50631 6.98157 7.21326 7.52302 7.58848 7.64952 7.93088 7.99696 8.31477 8.52840 8.99064 9.22705 9.63302 11.10290 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.003352 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.950364 B = 8351.217985 C = 8878.720508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.524 6.524 15 C 0.039 3.961 16 N -0.653 5.653 17 C 0.135 3.865 18 H 0.058 0.942 19 C -0.135 4.135 20 C 0.128 3.872 21 C -0.170 4.170 22 C -0.077 4.077 23 C -0.180 4.180 24 C 0.103 3.897 25 N -0.457 5.457 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.358 0.642 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 -5.850 22.115 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.400 6.400 15 C -0.093 4.093 16 N -0.287 5.287 17 C 0.025 3.975 18 H 0.075 0.925 19 C -0.193 4.193 20 C -0.011 4.011 21 C -0.191 4.191 22 C -0.103 4.103 23 C -0.200 4.200 24 C -0.054 4.054 25 N -0.165 5.165 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.180 0.820 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.798 -5.058 21.154 22.788 hybrid contribution -0.541 -0.388 0.453 0.806 sum -7.340 -5.446 21.607 23.460 Atomic orbital electron populations 1.22227 0.97011 1.01272 1.02202 1.21385 0.93312 0.84442 1.02578 1.48249 1.64240 1.13187 1.07697 1.19237 0.96192 0.93611 0.78134 1.21495 0.96971 1.31625 1.06036 0.92400 1.24940 0.97818 0.94987 0.96457 1.69950 1.35577 1.33679 1.14364 0.86445 0.84759 0.78052 0.78189 1.19780 1.21078 1.20895 1.20161 0.78908 0.87155 0.84810 1.90690 1.44542 1.17899 1.86854 1.21993 0.99524 0.96923 0.90861 1.60051 1.63414 1.06687 0.98577 1.20433 0.97749 0.91947 0.87418 0.92462 1.21783 0.97593 0.99507 1.00458 1.21360 0.92898 0.92408 0.94387 1.21904 1.00976 1.00841 0.95332 1.21535 0.97191 0.93047 0.98503 1.22177 1.00422 0.97802 0.99638 1.22894 0.94447 0.98554 0.89521 1.67563 1.18329 1.00563 1.30046 0.92259 0.93284 0.92052 0.89995 0.91881 0.95156 0.93985 0.92870 0.88759 0.93308 0.82022 0.92694 0.91768 0.91381 0.84908 0.84955 0.84924 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.95 2.46 -175.06 -0.43 -13.38 16 4 C 0.25 6.62 5.16 -5.20 -0.03 6.59 16 5 C -0.52 -15.19 9.39 -34.44 -0.32 -15.52 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 9 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.50 10.88 7.71 -10.99 -0.08 10.80 16 14 O -0.52 -13.88 15.78 5.55 0.09 -13.79 16 15 C 0.04 0.62 4.52 -4.98 -0.02 0.60 16 16 N -0.65 -10.42 5.68 -109.22 -0.62 -11.04 16 17 C 0.14 1.63 2.86 -68.86 -0.20 1.44 16 18 H 0.06 0.58 7.77 -51.93 -0.40 0.18 16 19 C -0.14 -1.50 9.40 37.16 0.35 -1.15 16 20 C 0.13 1.54 5.70 -82.58 -0.47 1.07 16 21 C -0.17 -1.56 9.77 -39.44 -0.39 -1.95 16 22 C -0.08 -0.61 10.18 -39.27 -0.40 -1.01 16 23 C -0.18 -1.51 10.11 -39.44 -0.40 -1.91 16 24 C 0.10 1.11 11.18 -17.55 -0.20 0.92 16 25 N -0.46 -6.29 9.29 -9.47 -0.09 -6.38 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 28 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 31 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 1.34 6.70 -51.93 -0.35 0.99 16 35 H 0.05 0.65 7.10 -51.93 -0.37 0.28 16 36 H 0.36 6.28 7.55 -39.29 -0.30 5.98 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -35.54 359.65 -8.48 -44.02 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.66 Total: 2.86 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.90 Total: 1.33 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.40 Total: -57.25 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.54 -8.48 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181780249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.847 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds